jgi.p|Nanoce1779_2|607426, mRNA_9705 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607426
Unique Name	mRNA_9705
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1842
Alignment location	scaffold_38:175617..177458 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	607512
Track	FilteredModels2
ProteinId	607426

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:175617..177458 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607426	gene_9705	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607426	mRNA_9705-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9705	CDS_9705	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:175617..177458+
coding sequence from alignment at scaffold_38:175617..177458+

mRNA sequence

>mRNA_9705 ID=mRNA_9705|Name=jgi.p|Nanoce1779_2|607426|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp
CTTGAACTTTCACTACCAACGCCATTCTCCTCTCCCTGCCTTATCAAGCC
CATAATTCTTTGCTCTATTTCACTCAGATGCAAGGCCTAACCTACCTGAC
CCCTCTCCCTGACACAGACACATCCATCGTCATTGTGCAAACGCGTCGCT
TACACGGTTAGAGGTACAGCATCGGATCATCCGACAGCGTGGCCAGCTTT
TTTTCGCTGTGGCCGTGAGTGAGGATCGACGCATCTGCACCTGTAACTGT
CTCTGCGGCCCCCAATCACGCTGCCATCAGCATCCCCTGCCTGAACGCGA
AATCAGGGAATGAGGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAA
AGCGGCGTCCAGGTCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTT
TTGGCCTTGCCTACCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGC
ATGATTGCGGCAATTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGC
TTCCCCCCCGAGACCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCA
ACGATGCAGCGAAGGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCT
CGTCTTGCCGGCGCTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGC
TTGCTTGGAAAGCTGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCC
GTTTCGATGAGGATCTCCTAATTTATCACAAATATTTCGCCGACCGCCCT
GGCGATGCTGCACCAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTT
GACCGAAACGAACACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGAC
TGCTCATCGAGGCATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCC
CCGAGGCGACCAAACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAA
ATTTGAGTTTGTGAACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGC
ATGAGTCCGTGTACGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCG
CAATGCGGGCCACTGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGAT
TGACTTTTTGAGTTTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCA
CCATTGATTTTAAGGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCC
AATCGCTTTTACGACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCA
GGTCCTGGAGGTGTTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTA
ACGTGAAATCGAGCAAGGTATTTTTGAAACAGGGTGACCTATAGAAAATG
ATTTCAATGGCCCAAATAGGAGTCGTGCAGAGCAAGTACTGGCGTGTCTC
GGGTTTTCCTCCTTCTCTTTTTATCCCCTTCTAAAGGATAGCCACGGAGA
TGTTGTCGTGAATCAGCCAGGAAACCGAACAAGGATGATATACACACGTA
CATGTGCGTGAGCGATGTCCCATTGATTGGATCATGCGCCCGGCGGGCGT
ACTGTGGGCCGTGAATTTATAAAAGACGATGATTACGTGGCCAAGGGTAT
GTGATTGAGTGCCTGTTGCACGTGCAGACGTTAGATGTCTACTCTTCTGC
ACATTCTACGTGTTTCCATTTATAGACTTGCATGAATCTACGTTCGCGAG
TTGTGTTGAATTTGCCTGTGGAATGTCTTATTATGGCTGCATGCGAGCTT
GACTTCGGCGGAAACTACCGAGTCAAACCTCGAACCTTGAAAGTAGATTA
ACAACAAAGTAGCTGTCGAGACATATACGCGAACAATTCCTG

protein sequence of jgi.p|Nanoce1779_2|607426

>mRNA_9705-protein ID=mRNA_9705-protein|Name=jgi.p|Nanoce1779_2|607426|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MRKTLSAPWRMTTKAASRSRPSLIFAMMLSFGLAYHYFGPEYGSGHSMIA
AIFSTPTTVLAADASPPRPQGFRSVNEIHCNDAAKENACQGAFEYVPRLA
GAIPPVIPAEAQAACLESWTTANEAGTERSRFDEDLLIYHKYFADRPGDA
APGFFLELGGFDGLTETNTRFFEACLGWSGLLIEASPLSFEKLKANAPRR
PNSDLLNVAPSCEKFEFVNLLKQANTGISLHESVYEEEGQLSWQIKAQCG
PLSFYLRELGVTKIDFLSLDVEAFEYYVLRTIDFKALDVKVLLVEVSNRF
YDSNTEKFVKLKSQVLEVLASNGFVEDTSINVKSSKVFLKQGDL*

mRNA from alignment at scaffold_38:175617..177458+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9705 ID=mRNA_9705|Name=jgi.p|Nanoce1779_2|607426|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp|location=Sequence derived from alignment at scaffold_38:175617..177458+ (Nannochloropsis oceanica)
CTTGAACTTTCACTACCAACGCCATTCTCCTCTCCCTGCCTTATCAAGCC
CATAATTCTTTGCTCTATTTCACTCAGATGCAAGGCCTAACCTACCTGAC
CCCTCTCCCTGACACAGACACATCCATCGTCATTGTGCAAACGCGTCGCT
TACACGGTTAGAGGTACAGCATCGGATCATCCGACAGCGTGGCCAGCTTT
TTTTCGCTGTGGCCGTGAGTGAGGATCGACGCATCTGCACCTGTAACTGT
CTCTGCGGCCCCCAATCACGCTGCCATCAGCATCCCCTGCCTGAACGCGA
AATCAGGGAATGAGGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAA
AGCGGCGTCCAGGTCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTT
TTGGCCTTGCCTACCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGC
ATGATTGCGGCAATTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGC
TTCCCCCCCGAGACCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCA
ACGATGCAGCGAAGGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCT
CGTCTTGCCGGCGCTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGC
TTGCTTGGAAAGCTGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCC
GTTTCGATGAGGATCTCCTAATTTATCACAAATATTTCGCCGACCGCCCT
GGCGATGCTGCACCAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTT
GACCGAAACGAACACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGAC
TGCTCATCGAGGCATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCC
CCGAGGCGACCAAACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAA
ATTTGAGTTTGTGAACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGC
ATGAGTCCGTGTACGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCG
CAATGCGGGCCACTGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGAT
TGACTTTTTGAGTTTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCA
CCATTGATTTTAAGGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCC
AATCGCTTTTACGACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCA
GGTCCTGGAGGTGTTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTA
ACGTGAAATCGAGCAAGGTATTTTTGAAACAGGGTGACCTATAGAAAATG
ATTTCAATGGCCCAAATAGGAGTCGTGCAGAGCAAGTACTGGCGTGTCTC
GGGTTTTCCTCCTTCTCTTTTTATCCCCTTCTAAAGGATAGCCACGGAGA
TGTTGTCGTGAATCAGCCAGGAAACCGAACAAGGATGATATACACACGTA
CATGTGCGTGAGCGATGTCCCATTGATTGGATCATGCGCCCGGCGGGCGT
ACTGTGGGCCGTGAATTTATAAAAGACGATGATTACGTGGCCAAGGGTAT
GTGATTGAGTGCCTGTTGCACGTGCAGACGTTAGATGTCTACTCTTCTGC
ACATTCTACGTGTTTCCATTTATAGACTTGCATGAATCTACGTTCGCGAG
TTGTGTTGAATTTGCCTGTGGAATGTCTTATTATGGCTGCATGCGAGCTT
GACTTCGGCGGAAACTACCGAGTCAAACCTCGAACCTTGAAAGTAGATTA
ACAACAAAGTAGCTGTCGAGACATATACGCGAACAATTCCTG

Coding sequence (CDS) from alignment at scaffold_38:175617..177458+

>mRNA_9705 ID=mRNA_9705|Name=jgi.p|Nanoce1779_2|607426|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_38:175617..177458+ (Nannochloropsis oceanica)
ATGAGGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAAAGCGGCGTC
CAGGTCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTTTTGGCCTTG
CCTACCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGCATGATTGCG
GCAATTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGCTTCCCCCCC
GAGACCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCAACGATGCAG
CGAAGGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCTCGTCTTGCC
GGCGCTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGCTTGCTTGGA
AAGCTGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCCGTTTCGATG
AGGATCTCCTAATTTATCACAAATATTTCGCCGACCGCCCTGGCGATGCT
GCACCAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTTGACCGAAAC
GAACACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGACTGCTCATCG
AGGCATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCCCCGAGGCGA
CCAAACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAAATTTGAGTT
TGTGAACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGCATGAGTCCG
TGTACGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCGCAATGCGGG
CCACTGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGATTGACTTTTT
GAGTTTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCACCATTGATT
TTAAGGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCCAATCGCTTT
TACGACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCAGGTCCTGGA
GGTGTTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTAACGTGAAAT
CGAGCAAGGTATTTTTGAAACAGGGTGACCTATAG

Synonyms

Publications