jgi.p|Nanoce1779_2|633595, mRNA_9701 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633595
Unique Name	mRNA_9701
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1900
Alignment location	scaffold_38:167049..169405 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633681
Track	FilteredModels2
ProteinId	633595

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:167049..169405 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633595	gene_9701	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633595	mRNA_9701-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9701	CDS_9701	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:167049..169405+
coding sequence from alignment at scaffold_38:167049..169405+

mRNA sequence

>mRNA_9701 ID=mRNA_9701|Name=jgi.p|Nanoce1779_2|633595|organism=Nannochloropsis oceanica|type=mRNA|length=1900bp
CCTCCCCCCTTTTCTCCCCACGGGTGCCCCTGCGTGTTCTTCGGCTGAGC
TTGGCCCACCGTCCCGCGCAGAAAGGCAACAGCAGCGGCAACAACTTGAA
TGTCCACAATCACGATAAAGAGGAGGACGAGGAGGAGAAACGGAGGGAGG
GTGGGCTGAATTCCCTCATGTCCGCTTTCAAAGAAGGCATCGCACCCTTC
CTCCATACTCTAGACATGTCCCATGGCCGACTGCACGGTCTTCCCGTTCT
CTCTCTTGCCGAAGCACTGCAGCAAAACGCCCTCCCCCTCCTCCGCCATC
TCCGCCTCGCCCACACGCACCTTACTTCTCACAGTTTCTCCCTGCTCGTC
CGGGCCATCTGCACGGCGAACCCGCCCCTCTTCCCTCACTCCCTCCCTTT
CTCCGGCAAGGGCCTCTCACTCGAAGCCCTCCTCCTCGAGGACAATCCTC
AGTTGGGGCACACTGGCCTACAGCATATCTACTTGGACGATTGCTCCATC
ACAGGCGAGGGCGTAGCTTGGTTAGGAGGCGCCCTTGTCCGAGGTCGCCT
CTGCAATCTCGTATCGCTGTCGTTGGCGCGGAACCACGGCGTGGGGGAGG
AGGGGGTGCGGTACCTCGTAAAATTTTTGGAGGAGATGGGAGGGAGGTGC
AGGCTGAATATGATCGACCTGCGCTGGACGAACATGGGCGTGGGGGGGGC
TGACGCACTGAGCCAAGTCCTGGAAGGTGGAAGCTGCCCGGCCCTATCTC
TAGCGATGCTCGCGCAGGGAGGAGCGCAGGGCACGAGCTGGTCCTTCGAA
ACACGTAAATCCCTCCATCGCGTCCGGGGGGTTCTCTTGTCAAGGGTCCT
GGAGGGGAAGGCGCTGGAGATGGCCCTCGCGGTGGGGGAAAGTGCGGGAG
AAAAGAAGGAAGGGAAAGAAGGAGGGGTGGGGTTGTTGAGGGCGGAGAGG
ATGAGTCGGAGACAGCAGCGGCAGATGCAGCAGCGTGCAGGGCTGCCACG
AGTAGTGTGTATCTAAGGAGATAGAAGGAAGGAGGAAGGAAGGGAGGGAA
CGTTTCATGAATTCGAATGTGAATAAATCTGCATGTGGATTTGTGTAGAG
GCCATGTGTAAATAACGAGGGAGGGAGTGAGAAAGATTTTTAGGGGCGGC
GATAAGAATCCTGCTGATTCGGATTGATGTGCGGGGCAGATGAACCCAAA
ATACGCAGGTCGATAGTCCATTTACTATTTGGTGTTTAAAGACGGCGGCA
AAATGTTGCAAGGAGGAAAATTGATGGGAGAAAAAGAGGAAGATTAAGAA
GAAGCTAGAGAAAAAGAAGGAAAGGTAGAGAAGGAGGGAAAAGAAGGAGA
AGCAGAGGAAGAAGACGATGATGACGACGACAGAGAGGTACGTGTACATC
AATATGTATCTGCAGTGTGCCTCAATTCGCCGATGCAGAGAACGTAAGAG
GCTAACACACCGTACAGAGAATCAGCGCCAGTAGCAGCAGCAGCAGCAGT
AGCAGCAGTACCAGCAGTTGCTTTAGAAGGTGCACGATCGAGTGAGTGTT
GCGTATCTACCCTTTATAGCTTATGTCTCTGCCCTTCAACATCACTTTAA
TCAAAACCTAGTCGAAGAGAGGATCTTCAAAGGCGACACCTGCCGTGTGT
AACAGAAATGGGGAGAATATGACGGCGGGGAGGTGAGAGGGCAGTTGCAG
TTGTCTGTGTATGCTTTGTGTTTAATGTGGGAGAAAGAGCGGGGAATCAT
GCCGGAGCGAGGGTGCTGGAGTTCAAAATTGAGTTTACATCTTCATTGAA
CATCAACATTTATCTGATTATATGAATTATATAAATATTTACATATGCAC
ATTTGTGAGTGCATGAGTGTACATAGATATTTACATATGTGCATTTGTGA

protein sequence of jgi.p|Nanoce1779_2|633595

>mRNA_9701-protein ID=mRNA_9701-protein|Name=jgi.p|Nanoce1779_2|633595|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MSAFKEGIAPFLHTLDMSHGRLHGLPVLSLAEALQQNALPLLRHLRLAHT
HLTSHSFSLLVRAICTANPPLFPHSLPFSGKGLSLEALLLEDNPQLGHTG
LQHIYLDDCSITGEGVAWLGGALVRGRLCNLVSLSLARNHGVGEEGVRYL
VKFLEEMGGRCRLNMIDLRWTNMGVGGADALSQVLEGGSCPALSLAMLAQ
GGAQGTSWSFETRKSLHRVRGVLLSRVLEGKALEMALAVGESAGEKKEGK
EGGVGLLRAERMSRRQQRQMQQRAGLPRVVCI*

mRNA from alignment at scaffold_38:167049..169405+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9701 ID=mRNA_9701|Name=jgi.p|Nanoce1779_2|633595|organism=Nannochloropsis oceanica|type=mRNA|length=2357bp|location=Sequence derived from alignment at scaffold_38:167049..169405+ (Nannochloropsis oceanica)
CCTCCCCCCTTTTCTCCCCACGGGTGCCCCTGCGTGTTCTTCGGCTGAGC
TTGGCCCACCGTCCCGCGCAGAAAGGCAACAGCAGCGGCAACAACTTGAA
TGTCCACAATCACGATAAAGAGGAGGACGAGGAGGAGAAACGGAGGGAGG
GTGGGCTGAATTCCCTCATGTCCGCTTTCAAAGAAGGCATCGCACCCTTC
CTCCATACTCTAGACATGTCCCATGGCCGACTGCACGGTCTTCCCGTTCT
CTCTCTTGCCGAAGCACTGCAGCAAAACGCCCTCCCCCTCCTCCGCCATC
TCCGCCTCGCCCACACGCACCTTACTTCTCACAGTTTCTCCCTGCTCGTC
CGGGCCATCTGCACGGCGAACCCGCCCCTCTTCCCTCACTCCCTCCCTTT
CTCCGGCAAGGGCCTCTCACTCGAAGCCCTCCTCCTCGAGGACAATCCTC
AGTTGGGGCACACTGGCCTACAGGTACTGAGTCAATGCCTCCAAGAAGGT
GGCTTGGCCTCCCTCCGTACCCTCAACCTGAACGGCTCGAAATGTAACGA
AAAATGGGATCGGGTGGGTGGAGGGAAGGAGGGCGGTTGAGAGGCACCTC
TTTGTGTACGGTTCCATACTTTCCGCCATCTCCTCCATTTCGTGAAAAAG
GGATACGTGTACATCCATTTACCTATTTCTCCCTTCCCTCCCTCCCCCCA
CCCCCGTTCGTAGGCGCCGATTCCGGTCTTCGGGAGCTCAGCCGCGTGCT
GGATGGAGGCGCGCCTGCCGCTTCTTCCCTGCAGCATATCTACTTGGACG
ATTGCTCCATCACAGGCGAGGGCGTAGCTTGGTTAGGAGGCGCCCTTGTC
CGAGGTCGCCTCTGCAATCTCGTATCGCTGTCGTTGGCGCGGAACCACGG
CGTGGGGGAGGAGGGGGTGCGGTACCTCGTAAAATTTTTGGAGGAGATGG
GAGGGAGGTGCAGGCTGAATATGATCGACCTGCGCTGGACGAACATGGGC
GTGGGGGGGGCTGGTAAGTACATTAACAAAAAATGTTGTCCTTCATCTTT
CCTTTTCACCTTCCTTCTCTGCCTCCGTCCATCTCATTTCCCCAAGCTCT
GGAGACAATTATCTTATGTCTTCTTCCCTCCCTCCTTCTCTCTTTCCCCC
CACCCACAGACGCACTGAGCCAAGTCCTGGAAGGTGGAAGCTGCCCGGCC
CTATCTCTAGCGATGCTCGCGCAGGGAGGAGCGCAGGGCACGAGCTGGTC
CTTCGAAACACGTAAATCCCTCCATCGCGTCCGGGGGGTTCTCTTGTCAA
GGGTCCTGGAGGGGAAGGCGCTGGAGATGGCCCTCGCGGTGGGGGAAAGT
GCGGGAGAAAAGAAGGAAGGGAAAGAAGGAGGGGTGGGGTTGTTGAGGGC
GGAGAGGATGAGTCGGAGACAGCAGCGGCAGATGCAGCAGCGTGCAGGGC
TGCCACGAGTAGTGTGTATCTAAGGAGATAGAAGGAAGGAGGAAGGAAGG
GAGGGAACGTTTCATGAATTCGAATGTGAATAAATCTGCATGTGGATTTG
TGTAGAGGCCATGTGTAAATAACGAGGGAGGGAGTGAGAAAGATTTTTAG
GGGCGGCGATAAGAATCCTGCTGATTCGGATTGATGTGCGGGGCAGATGA
ACCCAAAATACGCAGGTCGATAGTCCATTTACTATTTGGTGTTTAAAGAC
GGCGGCAAAATGTTGCAAGGAGGAAAATTGATGGGAGAAAAAGAGGAAGA
TTAAGAAGAAGCTAGAGAAAAAGAAGGAAAGGTAGAGAAGGAGGGAAAAG
AAGGAGAAGCAGAGGAAGAAGACGATGATGACGACGACAGAGAGGTACGT
GTACATCAATATGTATCTGCAGTGTGCCTCAATTCGCCGATGCAGAGAAC
GTAAGAGGCTAACACACCGTACAGAGAATCAGCGCCAGTAGCAGCAGCAG
CAGCAGTAGCAGCAGTACCAGCAGTTGCTTTAGAAGGTGCACGATCGAGT
GAGTGTTGCGTATCTACCCTTTATAGCTTATGTCTCTGCCCTTCAACATC
ACTTTAATCAAAACCTAGTCGAAGAGAGGATCTTCAAAGGCGACACCTGC
CGTGTGTAACAGAAATGGGGAGAATATGACGGCGGGGAGGTGAGAGGGCA
GTTGCAGTTGTCTGTGTATGCTTTGTGTTTAATGTGGGAGAAAGAGCGGG
GAATCATGCCGGAGCGAGGGTGCTGGAGTTCAAAATTGAGTTTACATCTT
CATTGAACATCAACATTTATCTGATTATATGAATTATATAAATATTTACA
TATGCACATTTGTGAGTGCATGAGTGTACATAGATATTTACATATGTGCA
TTTGTGA

Coding sequence (CDS) from alignment at scaffold_38:167049..169405+

>mRNA_9701 ID=mRNA_9701|Name=jgi.p|Nanoce1779_2|633595|organism=Nannochloropsis oceanica|type=CDS|length=2547bp|location=Sequence derived from alignment at scaffold_38:167049..169405+ (Nannochloropsis oceanica)
ATGTCCGCTTTCAAAGAAGGCATCGCACCCTTCCTCCATACTCTAGACAT
GTCCCATGGCCGACTGCACGGTCTTCCCGTTCTCTCTCTTGCCGAAGCAC
TGCAGCAAAACGCCCTCCCCCTCCTCCGCCATCTCCGCCTCGCCCACACG
CACCTTACTTCTCACAGTTTCTCCCTGCTCGTCCGGGCCATCTGCACGGC
GAACCCGCCCCTCTTCCCTCACTCCCTCCCTTTCTCCGGCAAGGGCCTCT
CACTCGAAGCCCTCCTCCTCGAGGACAATCCTCAGTTGGGGCACACTGGC
CTACAGCATATCTACTTGGACGATTGCTCCATCACAGGCGAGGGCGTAGC
TTGGTTAGGAGGCGCCCTTGTCCGAGGTCGCCTCTGCAATCTCGTATCGC
TGTCGTTGGCGCGGAACCACGGCGTGGGGGAGGAGGGGGTGCGGTACCTC
GTAAAATTTTTGGAGGAGATGGGAGGGAGGTGCAGGCTGAATATGATCGA
CCTGCGCTGGACGAACATGGGCGTGGGGGGGGCTGACGCACTGAGCCAAG
TCCTGGAAGGTGGAAGCTGCCCGGCCCTATCTCTAGCGATGCTCGCGCAG
GGAGGAGCGCAGGGCACGAGCTGGTCCTTCGAAACACGTAAATCCCTCCA
TCGCGTCCGGGGGGTTCTCTTGTCAAGGGTCCTGGAGGGGAAGGCGCTGG
AGATGGCCCTCGCGGTGGGGGAAAGTGCGGGAGAAAAGAAGGAAGGGAAA
GAAGGAGGGGTGGGGTTGTTGAGGGCGGAGAGGATGAGTCGGAGACAGCA
GCGGCAGATGCAGCAGCGTGCAGGGCTGCCACGAGTAGTGTGTATCTAAA
TGTCCGCTTTCAAAGAAGGCATCGCACCCTTCCTCCATACTCTAGACATG
TCCCATGGCCGACTGCACGGTCTTCCCGTTCTCTCTCTTGCCGAAGCACT
GCAGCAAAACGCCCTCCCCCTCCTCCGCCATCTCCGCCTCGCCCACACGC
ACCTTACTTCTCACAGTTTCTCCCTGCTCGTCCGGGCCATCTGCACGGCG
AACCCGCCCCTCTTCCCTCACTCCCTCCCTTTCTCCGGCAAGGGCCTCTC
ACTCGAAGCCCTCCTCCTCGAGGACAATCCTCAGTTGGGGCACACTGGCC
TACAGCATATCTACTTGGACGATTGCTCCATCACAGGCGAGGGCGTAGCT
TGGTTAGGAGGCGCCCTTGTCCGAGGTCGCCTCTGCAATCTCGTATCGCT
GTCGTTGGCGCGGAACCACGGCGTGGGGGAGGAGGGGGTGCGGTACCTCG
TAAAATTTTTGGAGGAGATGGGAGGGAGGTGCAGGCTGAATATGATCGAC
CTGCGCTGGACGAACATGGGCGTGGGGGGGGCTGACGCACTGAGCCAAGT
CCTGGAAGGTGGAAGCTGCCCGGCCCTATCTCTAGCGATGCTCGCGCAGG
GAGGAGCGCAGGGCACGAGCTGGTCCTTCGAAACACGTAAATCCCTCCAT
CGCGTCCGGGGGGTTCTCTTGTCAAGGGTCCTGGAGGGGAAGGCGCTGGA
GATGGCCCTCGCGGTGGGGGAAAGTGCGGGAGAAAAGAAGGAAGGGAAAG
AAGGAGGGGTGGGGTTGTTGAGGGCGGAGAGGATGAGTCGGAGACAGCAG
CGGCAGATGCAGCAGCGTGCAGGGCTGCCACGAGTAGTGTGTATCTAAAT
GTCCGCTTTCAAAGAAGGCATCGCACCCTTCCTCCATACTCTAGACATGT
CCCATGGCCGACTGCACGGTCTTCCCGTTCTCTCTCTTGCCGAAGCACTG
CAGCAAAACGCCCTCCCCCTCCTCCGCCATCTCCGCCTCGCCCACACGCA
CCTTACTTCTCACAGTTTCTCCCTGCTCGTCCGGGCCATCTGCACGGCGA
ACCCGCCCCTCTTCCCTCACTCCCTCCCTTTCTCCGGCAAGGGCCTCTCA
CTCGAAGCCCTCCTCCTCGAGGACAATCCTCAGTTGGGGCACACTGGCCT
ACAGCATATCTACTTGGACGATTGCTCCATCACAGGCGAGGGCGTAGCTT
GGTTAGGAGGCGCCCTTGTCCGAGGTCGCCTCTGCAATCTCGTATCGCTG
TCGTTGGCGCGGAACCACGGCGTGGGGGAGGAGGGGGTGCGGTACCTCGT
AAAATTTTTGGAGGAGATGGGAGGGAGGTGCAGGCTGAATATGATCGACC
TGCGCTGGACGAACATGGGCGTGGGGGGGGCTGACGCACTGAGCCAAGTC
CTGGAAGGTGGAAGCTGCCCGGCCCTATCTCTAGCGATGCTCGCGCAGGG
AGGAGCGCAGGGCACGAGCTGGTCCTTCGAAACACGTAAATCCCTCCATC
GCGTCCGGGGGGTTCTCTTGTCAAGGGTCCTGGAGGGGAAGGCGCTGGAG
ATGGCCCTCGCGGTGGGGGAAAGTGCGGGAGAAAAGAAGGAAGGGAAAGA
AGGAGGGGTGGGGTTGTTGAGGGCGGAGAGGATGAGTCGGAGACAGCAGC
GGCAGATGCAGCAGCGTGCAGGGCTGCCACGAGTAGTGTGTATCTAA

Synonyms

Publications