jgi.p|Nanoce1779_2|574829, mRNA_970 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574829
Unique NamemRNA_970
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1749
Alignment locationscaffold_2:891193..892941 -

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Properties
Property NameValue
TranscriptId574915
TrackFilteredModels2
ProteinId574829
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:891193..892941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574829gene_970Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574829mRNA_970-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_970CDS_970Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_970 ID=mRNA_970|Name=jgi.p|Nanoce1779_2|574829|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
AGCGCGGGGGCGGGCACTACATTCTTAAGCCAAGCGGACTAATCAGAATG
GAATATCACCTATCACCCCTGAGGCCTTGAGAAGAGTTGACAAAGCTCAT
GATGTTCAAGAGCAAGCGCAAGGGCAAAAAGAGCGATGCGTTGGAGCAAG
GAAGCGACGAGCAGGCACCGCCTACTCCCCCCCCACGTAAACGGGAGGAG
GTAGATGGTGCTGCGGCCCTCTTGACGCCACCCCCTCCTGCCTCCAAGAG
GACTTCGTCAGCCATTCCAGTGCCCAGCTCTGCTCCCCCTCGCCTATTCA
AGCAACGCATTGACAACGAGTACGACGAGGAGGAGGAGGGTGTCGCTCCA
CCTGCCTCTTTGCATCGACGTCTCTTTCGGCTTCGCATTGGTAGCGCCTT
CAAGCGGCTTGCACCGCCTACCATGACGCCCACCACCACTCCCTTCAAAG
GACGGGAAGGCAACAATCTGCTGGGTTCACCTGCGTCACTACTACCGTTG
TTGTCGCCATCGAGTGCCCAGGGTGAGGAGAGAGAGGAGGAAACGAAAGA
AGAAAGGGTGCACGTAGAGGAAGCAGCAGCAACTGCAGCAGACCAAGAAA
AATATGATGAAGCACCTGCATTGCCGGCTCATTCTACGGTGGCGCTTTCC
CCTTGCCGCCCAGCAGAAATTTCCGTCTTGCCTGCGTTGTCCTCGTCAGT
GCGTGCTTCCCCCGCTCGTGGTGTAGGTGGTGGTCCTCGACTGCTCTCTC
GGGAGGCTATGCTCCAAGCCGACCTATACCGAGCCCGTCGACAACTGGAG
GAAGAACGGAGCAAGACAAAAAAGGCTACACAGCGGGAAGTGATGCACAA
GAGGGAGGCTGAGAGGATTGGGGCAGTATTGCAGCAGCTGAAGGGGTTGC
TGCATGTTTTGGCATGTTTGTCAGCTGTGGCAAGAGAGGGAGGAGAAGGG
ATGAAAGCGGAGGAGGTCATGCGCACAGCGCTTATTCAGGTAGTGGCGGT
TGAGGTACCCGAGCTATTGGATGTGGATCAAGCACGTCTATTCGTTGTGA
TCGAGGGGGGAAGGGAGGAAGGGCGTGTGCTTTGGACAGTTGGGAGTAAT
GGTGTGTCGTTGGAAGCACCGCTGCAGACGGGGTTGGTGGGCGAGGCGGC
GGTCACTGGTCGTATGGTGCAAGCAGGAGGACAGAGGATGGTATGTGTAC
CAGTGCTATCTTTGATAGATGGAGGAGGACAAAAGGAGGTGTTAGCGGTA
CTGCAATTATCGAGAGAGGAGGAGGGTGAGAAGGAGGGAGGGAAGGAAGA
GTGGGAAGACGAACTGCAACAGCAGCAGAGGAACATGATTTTTGAGGTGC
TGACGAGACATTTGGGCTTATTGTTGGGCGCGAATCGGGAGATATGTGTC
TTGGCCCGTGCCCGATGTCGAGGGTTGGAGCGAATGGATCGACTGGCCAG
GAAGGCAATAAAGAGGGCTGCATGGACGCGCTGGGCGGTGGCATGTGATG
TAGATTCATCTCAAAAGCTGAGGAGAGACAACCCGTTGGTACCGTTGTTG
ACTCAGGCCTTGCTTGAGCTTGAAGCAGCCTTCCAGGGAGGGAGTAGTAG
AGAGGGTTTCATGGCAGCGATGGAGGGTATAATCAAAGAGGTGGCGAAGA
AAGCCGTGACACAGGAAGCAGAGGAGGAAGAGGAGGGGGAGGGTAAGGGA
GAGAGAGTGACAGCTGATGCTGATGTGTGGATTGCTTTATCCAAGGCCA
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protein sequence of jgi.p|Nanoce1779_2|574829

>mRNA_970-protein ID=mRNA_970-protein|Name=jgi.p|Nanoce1779_2|574829|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MMFKSKRKGKKSDALEQGSDEQAPPTPPPRKREEVDGAAALLTPPPPASK
RTSSAIPVPSSAPPRLFKQRIDNEYDEEEEGVAPPASLHRRLFRLRIGSA
FKRLAPPTMTPTTTPFKGREGNNLLGSPASLLPLLSPSSAQGEEREEETK
EERVHVEEAAATAADQEKYDEAPALPAHSTVALSPCRPAEISVLPALSSS
VRASPARGVGGGPRLLSREAMLQADLYRARRQLEEERSKTKKATQREVMH
KREA
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mRNA from alignment at scaffold_2:891193..892941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_970 ID=mRNA_970|Name=jgi.p|Nanoce1779_2|574829|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at scaffold_2:891193..892941- (Nannochloropsis oceanica)
AGCGCGGGGGCGGGCACTACATTCTTAAGCCAAGCGGACTAATCAGAATG
GAATATCACCTATCACCCCTGAGGCCTTGAGAAGAGTTGACAAAGCTCAT
GATGTTCAAGAGCAAGCGCAAGGGCAAAAAGAGCGATGCGTTGGAGCAAG
GAAGCGACGAGCAGGCACCGCCTACTCCCCCCCCACGTAAACGGGAGGAG
GTAGATGGTGCTGCGGCCCTCTTGACGCCACCCCCTCCTGCCTCCAAGAG
GACTTCGTCAGCCATTCCAGTGCCCAGCTCTGCTCCCCCTCGCCTATTCA
AGCAACGCATTGACAACGAGTACGACGAGGAGGAGGAGGGTGTCGCTCCA
CCTGCCTCTTTGCATCGACGTCTCTTTCGGCTTCGCATTGGTAGCGCCTT
CAAGCGGCTTGCACCGCCTACCATGACGCCCACCACCACTCCCTTCAAAG
GACGGGAAGGCAACAATCTGCTGGGTTCACCTGCGTCACTACTACCGTTG
TTGTCGCCATCGAGTGCCCAGGGTGAGGAGAGAGAGGAGGAAACGAAAGA
AGAAAGGGTGCACGTAGAGGAAGCAGCAGCAACTGCAGCAGACCAAGAAA
AATATGATGAAGCACCTGCATTGCCGGCTCATTCTACGGTGGCGCTTTCC
CCTTGCCGCCCAGCAGAAATTTCCGTCTTGCCTGCGTTGTCCTCGTCAGT
GCGTGCTTCCCCCGCTCGTGGTGTAGGTGGTGGTCCTCGACTGCTCTCTC
GGGAGGCTATGCTCCAAGCCGACCTATACCGAGCCCGTCGACAACTGGAG
GAAGAACGGAGCAAGACAAAAAAGGCTACACAGCGGGAAGTGATGCACAA
GAGGGAGGCTGAGAGGATTGGGGCAGTATTGCAGCAGCTGAAGGGGTTGC
TGCATGTTTTGGCATGTTTGTCAGCTGTGGCAAGAGAGGGAGGAGAAGGG
ATGAAAGCGGAGGAGGTCATGCGCACAGCGCTTATTCAGGTAGTGGCGGT
TGAGGTACCCGAGCTATTGGATGTGGATCAAGCACGTCTATTCGTTGTGA
TCGAGGGGGGAAGGGAGGAAGGGCGTGTGCTTTGGACAGTTGGGAGTAAT
GGTGTGTCGTTGGAAGCACCGCTGCAGACGGGGTTGGTGGGCGAGGCGGC
GGTCACTGGTCGTATGGTGCAAGCAGGAGGACAGAGGATGGTATGTGTAC
CAGTGCTATCTTTGATAGATGGAGGAGGACAAAAGGAGGTGTTAGCGGTA
CTGCAATTATCGAGAGAGGAGGAGGGTGAGAAGGAGGGAGGGAAGGAAGA
GTGGGAAGACGAACTGCAACAGCAGCAGAGGAACATGATTTTTGAGGTGC
TGACGAGACATTTGGGCTTATTGTTGGGCGCGAATCGGGAGATATGTGTC
TTGGCCCGTGCCCGATGTCGAGGGTTGGAGCGAATGGATCGACTGGCCAG
GAAGGCAATAAAGAGGGCTGCATGGACGCGCTGGGCGGTGGCATGTGATG
TAGATTCATCTCAAAAGCTGAGGAGAGACAACCCGTTGGTACCGTTGTTG
ACTCAGGCCTTGCTTGAGCTTGAAGCAGCCTTCCAGGGAGGGAGTAGTAG
AGAGGGTTTCATGGCAGCGATGGAGGGTATAATCAAAGAGGTGGCGAAGA
AAGCCGTGACACAGGAAGCAGAGGAGGAAGAGGAGGGGGAGGGTAAGGGA
GAGAGAGTGACAGCTGATGCTGATGTGTGGATTGCTTTATCCAAGGCCA
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Coding sequence (CDS) from alignment at scaffold_2:891193..892941-

>mRNA_970 ID=mRNA_970|Name=jgi.p|Nanoce1779_2|574829|organism=Nannochloropsis oceanica|type=CDS|length=764bp|location=Sequence derived from alignment at scaffold_2:891193..892941- (Nannochloropsis oceanica)
ATGATGTTCAAGAGCAAGCGCAAGGGCAAAAAGAGCGATGCGTTGGAGCA
AGGAAGCGACGAGCAGGCACCGCCTACTCCCCCCCCACGTAAACGGGAGG
AGGTAGATGGTGCTGCGGCCCTCTTGACGCCACCCCCTCCTGCCTCCAAG
AGGACTTCGTCAGCCATTCCAGTGCCCAGCTCTGCTCCCCCTCGCCTATT
CAAGCAACGCATTGACAACGAGTACGACGAGGAGGAGGAGGGTGTCGCTC
CACCTGCCTCTTTGCATCGACGTCTCTTTCGGCTTCGCATTGGTAGCGCC
TTCAAGCGGCTTGCACCGCCTACCATGACGCCCACCACCACTCCCTTCAA
AGGACGGGAAGGCAACAATCTGCTGGGTTCACCTGCGTCACTACTACCGT
TGTTGTCGCCATCGAGTGCCCAGGGTGAGGAGAGAGAGGAGGAAACGAAA
GAAGAAAGGGTGCACGTAGAGGAAGCAGCAGCAACTGCAGCAGACCAAGA
AAAATATGATGAAGCACCTGCATTGCCGGCTCATTCTACGGTGGCGCTTT
CCCCTTGCCGCCCAGCAGAAATTTCCGTCTTGCCTGCGTTGTCCTCGTCA
GTGCGTGCTTCCCCCGCTCGTGGTGTAGGTGGTGGTCCTCGACTGCTCTC
TCGGGAGGCTATGCTCCAAGCCGACCTATACCGAGCCCGTCGACAACTGG
AGGAAGAACGGAGCAAGACAAAAAAGGCTACACAGCGGGAAGTGATGCAC
AAGAGGGAGGCTGA
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Synonyms
Publications