jgi.p|Nanoce1779_2|280611, mRNA_9693 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|280611
Unique NamemRNA_9693
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length676
Alignment locationscaffold_38:136341..137704 -

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Properties
Property NameValue
TranscriptId280697
TrackFilteredModels2
ProteinId280611
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:136341..137704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280611gene_9693Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280611mRNA_9693-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9693CDS_9693Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9693 ID=mRNA_9693|Name=jgi.p|Nanoce1779_2|280611|organism=Nannochloropsis oceanica|type=mRNA|length=676bp
TGCCTCTGCACAGGTGCAGAAGTCCCTAAAGGAGGACACGACCAAGAAGT
ACACGGACGACGGCATGGACCTCGTCGAGACCCTGAAAAAACGCACCATC
CAGAACAAGGCCAAGAACGACCGTATTTTGATGGAGAAAACTTTCCTCAA
CTCGGAGGCAGGCATCTACGGGCCCTTCGACAAGTTCATCCCGGTGATGC
GGAAGGACGGGCAGTACGTGCTCCTAACCGAGGAGGAGTACAAGACCCTC
AAGAACGAGGGCAAGATCGTCGGCAGGGATTTCGTCGTCGATTATGAAGT
GGCAAGCGCCCCGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGAAGACA
AGAAGGCCACATCCACAGGATCATCGTCTCAGAAGCCGTTGGAGGAGGAT
GACGCCGACTTGTTCGAGGACGGCGAAGACGTCGTGTAGAGGGAGGGAAG
GAGGGAGAGAAGGAGGGAGGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGA
AGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGGGGCATGGAGG
GGGAGGAGGGCGCGCGTGAATTCTAATGCATGCAATAACCCACAGAGCAC
AAGGCAAAAGCTACCAAAAAGGGAAAAAAACAGTAAAAGAAATGGGGGCC
TGTCGCATCACACCGCCCCTTGGACA
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protein sequence of jgi.p|Nanoce1779_2|280611

>mRNA_9693-protein ID=mRNA_9693-protein|Name=jgi.p|Nanoce1779_2|280611|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDGQ
YVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKATS
TGSSSQKPLEEDDADLFEDGEDVV*
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mRNA from alignment at scaffold_38:136341..137704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9693 ID=mRNA_9693|Name=jgi.p|Nanoce1779_2|280611|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp|location=Sequence derived from alignment at scaffold_38:136341..137704- (Nannochloropsis oceanica)
TGCCTCTGCACAGGTGCAGAAGTCCCTAAAGGAGGACACGACCAAGAAGT
ACACGGACGACGGCATGGACCTCGTCGAGACCCTGAAAAAACGGTGCGTA
GCTTGGAAACGAGAGGATGGAGGAGCTTTAGAAGAGGGGGAAATCGAAGA
ATAAATGCGTGCCTTGGACGATTGGTTCAGATTCTCGTGCTCTTGCCCCG
AACACGCGAGATTGTCCGTCCTGTCGAGAAGAGGGCCTCTACACAATTCC
TGAACCATTTTCCCCCCGCCCTCCCTCACCCCCTCTCTCCCTGTCCCTCC
CGTCTTATCCCCTTGCAGCACCATCCAGAACAAGGCCAAGAACGACCGTA
TTTTGATGGAGAAAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCC
TTCGACAAGTAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGCAGGGGAC
GAAGTACCCAGAAGTGAGAGATCCCCACGCACAACTCCACCTCCCCCCCT
CCCTCCCTCCCTCGCTCTGGTAGGTTCATCCCGGTGATGCGGAAGGACGG
GCAGTACGTGCTCCTAACCGAGGAGGAGTACAAGACCCTCAAGAACGAGG
GCAAGATCGTCGGCAGGGATTTCGTCGTCGATTATGAAGTACGTCCCTCT
CTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCATCTTCTTCAATTCTT
CCTCCCCTTAATACCTACCTACCTACCTACCTACCTACCTCCCTCCCTCC
CAGGTGGCAAGCGCCCCGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGA
AGACAAGAAGGCCACATCCACAGGTAGGCAGGCAGGCAAGGAGGGAAGGA
GGGAGGGAGGGACAGGAGGGGGGGGAGGGAGGGGAGGAAGACAATGCCAG
ATCCACAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGA
AGACCCATTGGTCAAAGAGAAGGGCGGGGAGGGAGGGAGGAAGAGGGGAG
GAAGGGAGGGAGGACGAAGAACTCATTTCTCTCTTGATGTTTGTCGTCCC
GTCCAGGATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTTG
TTCGAGGACGGCGAAGACGTCGTGTAGAGGGAGGGAAGGAGGGAGAGAAG
GAGGGAGGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAGGGA
GGGAGGGAGGGAGGGAAGGAGGGAGGGGGGCATGGAGGGGGAGGAGGGCG
CGCGTGAATTCTAATGCATGCAATAACCCACAGAGCACAAGGCAAAAGCT
ACCAAAAAGGGAAAAAAACAGTAAAAGAAATGGGGGCCTGTCGCATCACA
CCGCCCCTTGGACA
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Coding sequence (CDS) from alignment at scaffold_38:136341..137704-

>mRNA_9693 ID=mRNA_9693|Name=jgi.p|Nanoce1779_2|280611|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at scaffold_38:136341..137704- (Nannochloropsis oceanica)
GATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTTGTTCGAG
GACGGCGAAGACGTCGTGTAGGTGGCAAGCGCCCCGGCAGCCGTTGAGGC
GCCAATTGTGGAAGAGGAAGACAAGAAGGCCACATCCACAGGTTCATCCC
GGTGATGCGGAAGGACGGGCAGTACGTGCTCCTAACCGAGGAGGAGTACA
AGACCCTCAAGAACGAGGGCAAGATCGTCGGCAGGGATTTCGTCGTCGAT
TATGAACACCATCCAGAACAAGGCCAAGAACGACCGTATTTTGATGGAGA
AAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCCTTCGACAAATGG
ACCTCGTCGAGACCCTGAAAAAACGGATCATCGTCTCAGAAGCCGTTGGA
GGAGGATGACGCCGACTTGTTCGAGGACGGCGAAGACGTCGTGTAGGTGG
CAAGCGCCCCGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGAAGACAAG
AAGGCCACATCCACAGGTTCATCCCGGTGATGCGGAAGGACGGGCAGTAC
GTGCTCCTAACCGAGGAGGAGTACAAGACCCTCAAGAACGAGGGCAAGAT
CGTCGGCAGGGATTTCGTCGTCGATTATGAACACCATCCAGAACAAGGCC
AAGAACGACCGTATTTTGATGGAGAAAACTTTCCTCAACTCGGAGGCAGG
CATCTACGGGCCCTTCGACAAATGGACCTCGTCGAGACCCTGAAAAAACG
GATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTTGTTCGAG
GACGGCGAAGACGTCGTGTAGGTGGCAAGCGCCCCGGCAGCCGTTGAGGC
GCCAATTGTGGAAGAGGAAGACAAGAAGGCCACATCCACAGGTTCATCCC
GGTGATGCGGAAGGACGGGCAGTACGTGCTCCTAACCGAGGAGGAGTACA
AGACCCTCAAGAACGAGGGCAAGATCGTCGGCAGGGATTTCGTCGTCGAT
TATGAACACCATCCAGAACAAGGCCAAGAACGACCGTATTTTGATGGAGA
AAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCCTTCGACAAATGG
ACCTCGTCGAGACCCTGAAAAAACGGATCATCGTCTCAGAAGCCGTTGGA
GGAGGATGACGCCGACTTGTTCGAGGACGGCGAAGACGTCGTGTAGGTGG
CAAGCGCCCCGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGAAGACAAG
AAGGCCACATCCACAGGTTCATCCCGGTGATGCGGAAGGACGGGCAGTAC
GTGCTCCTAACCGAGGAGGAGTACAAGACCCTCAAGAACGAGGGCAAGAT
CGTCGGCAGGGATTTCGTCGTCGATTATGAACACCATCCAGAACAAGGCC
AAGAACGACCGTATTTTGATGGAGAAAACTTTCCTCAACTCGGAGGCAGG
CATCTACGGGCCCTTCGACAAATGGACCTCGTCGAGACCCTGAAAAAACG
GATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTTGTTCGAG
GACGGCGAAGACGTCGTGTAGGTGGCAAGCGCCCCGGCAGCCGTTGAGGC
GCCAATTGTGGAAGAGGAAGACAAGAAGGCCACATCCACAGGTTCATCCC
GGTGATGCGGAAGGACGGGCAGTACGTGCTCCTAACCGAGGAGGAGTACA
AGACCCTCAAGAACGAGGGCAAGATCGTCGGCAGGGATTTCGTCGTCGAT
TATGAACACCATCCAGAACAAGGCCAAGAACGACCGTATTTTGATGGAGA
AAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCCTTCGACAAATGG
ACCTCGTCGAGACCCTGAAAAAACG
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Synonyms
Publications