jgi.p|Nanoce1779_2|633588, mRNA_9692 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633588
Unique NamemRNA_9692
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1193
Alignment locationscaffold_38:133985..136060 +

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Properties
Property NameValue
TranscriptId633674
TrackFilteredModels2
ProteinId633588
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:133985..136060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633588gene_9692Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633588mRNA_9692-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9692CDS_9692Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9692 ID=mRNA_9692|Name=jgi.p|Nanoce1779_2|633588|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
AACAGACAAGTGGGACATGAACTCCCCGGAGGTGCTGGCCGAAGCCTTGT
CCGCGGCAGAAGGTGGCGCCATTTCCACCGCTGTGCTTTATCCGCTTGAG
GTAATTAAGACCGTCATCCAAGCCAGCAAGGGCAAGAAAAAGGCAGAGAC
AAAGCCGTCAGCTGCGAGTAGCTCGACCTGGAATGAAGAGCAAGCACGGG
CTGAAGAAGGTGAAGCCAGCCCCATTGCTGCTGCCGCCGCTGCCACCGTC
ACTGCCATCACTCTTGCTTCTGGCAGCGCGGCGGAGAAAGAGAGGAAGGG
AGGGGAGGATGCAGCCAAGCCCTTGACAAGCCGCGAGGTGGCCCAGGACA
TTTACAAGCGGGCGGGCGTGACGGGATTCTTCGGTGGGGTCCAGTACGCG
TCGCTGCAAAGTGCGTTGGAAAAATCGATTTATTTTTATGCCTACAGCAC
TATGAAGGGCATCACCAAGCTGCTGAATGGCGGCAGGTTCGGAGTGCGTG
AGAACCTGATCGTCGGATACCTGAGCGAGGTCATCCACCTGCCCGTTACC
GTCCCCCTGGAGGTGATCATCACGCGCATCATCACCAGCCAAGGCCGCGT
CTCCTCTTGGGCGCAGGCCACGAAGGAGCTGCTGGAGGAAAACGGGGTTA
AAGGCTTGTACAAAGGCATCACCACATATGGCGTCTTGTGCCTGAAGCCA
GCCATCCAGTACACGGTCTTCGAGCAGCTCCGACGGGGCATCATCTCCTT
CCTCTCGCGGCGACAAGGGGTCCCAGTCAAGGCCCTAACGGCTTGGCAAG
CTTTCCTCCTCGGTGCGCTCTCTCGGGCCATCGCCACCCTCCTCGTCTTC
CCTTTCATACGTGTCCGCAAAGTGCTCATGGCGCAAAGCAAGGGCCGCGA
CGAGGGAGGGAGCGAGGGAGGGAGGGAGGCGGTGGCGGACAGTGCGTGGG
TCACCCTCAAGGCGACGGTGAAGGAGGAGGGCGTGCACGGTCTCTACCGA
GGTGAGTCATATTGATGGACAGTGCTCTTTGCCCTCCCTCGTCATCGCCT
TCCCCCCCTTCCCCTATTCCTCTGCCCTTGCGTCCTCCATCCTCATCCCC
GCCGTTTTTCCTCCCTCTTTCCTTCCTCTTTGGCTTCCTCCTCCCCTCCC
TCCCCTCCCTCCTCCTTCCCAGGCATGGCCCCGGAGCTGACCC
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protein sequence of jgi.p|Nanoce1779_2|633588

>mRNA_9692-protein ID=mRNA_9692-protein|Name=jgi.p|Nanoce1779_2|633588|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MNSPEVLAEALSAAEGGAISTAVLYPLEVIKTVIQASKGKKKAETKPSAA
SSSTWNEEQARAEEGEASPIAAAAAATVTAITLASGSAAEKERKGGEDAA
KPLTSREVAQDIYKRAGVTGFFGGVQYASLQSALEKSIYFYAYSTMKGIT
KLLNGGRFGVRENLIVGYLSEVIHLPVTVPLEVIITRIITSQGRVSSWAQ
ATKELLEENGVKGLYKGITTYGVLCLKPAIQYTVFEQLRRGIISFLSRRQ
GVPVKALTAWQAFLLGALSRAIATLLVFPFIRVRKVLMAQSKGRDEGGSE
GGREAVADSAWVTLKATVKEEGVHGLYRGESY*
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mRNA from alignment at scaffold_38:133985..136060+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9692 ID=mRNA_9692|Name=jgi.p|Nanoce1779_2|633588|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp|location=Sequence derived from alignment at scaffold_38:133985..136060+ (Nannochloropsis oceanica)
AACAGACAAGTGGGACATGAACTCCCCGGAGGTGCTGGCCGAAGCCTTGT CCGCGGCAGAAGGTGGCGCCATTTCCACCGCTGTGCTTTATCCGCTTGAG GTAAGAAGGTGGAGGGCGGGAGGGCGGGAGGGCGGGAGGGCGGGAGGGCA GGAGGGCGGGAGGGAACGGGGGATGAATCAGAGCTGATGCGCATTGACAT CTCCGTAAGGTGTCTAGGTAGTAGGCCCATGAATGAGTGCCTGTATCAGT GTTGCCAGACGATCGACAAACTACCAGGGGCACCCCTTCACCCCTGCCAT CCAAATCCCCGCCACCGCCCCCATTCTCTTTCCATCCCTCCCTCACCCTA TACCCAAAGGTAATTAAGACCGTCATCCAAGCCAGCAAGGGCAAGAAAAA GGCAGAGACAAAGCCGTCAGCTGCGAGTAGCTCGACCTGGAATGAAGAGC AAGCACGGGCTGAAGAAGGTGAAGCCAGCCCCATTGCTGCTGCCGCCGCT GCCACCGTCACTGCCATCACTCTTGCTTCTGGCAGCGCGGCGGAGAAAGA GAGGAAGGGAGGGGAGGATGCAGCCAAGCCCTTGACAAGCCGCGAGGTGG CCCAGGACATTTACAAGCGGGCGGGCGTGACGGGATTCTTCGGTGGGGTC CAGTACGCGTCGCTGCAAAGTGCGTTGGAAAAATCGATTTATTTTTATGC CTACAGCACTATGAAGGGCATCACCAAGCTGCTGAATGGCGGCAGGTACG GAGGGAGGGGGGGAGGAAGGGAAGAGAAGAAAGGAGGGCCAAGGAAAAAT TGAAGTGCAGTTGACGTATGATGATATTAGGCATTTTATTCATCCACACT TGACGTACCCCAAAGGTTCGGAGTGCGTGAGAACCTGATCGTCGGATACC TGAGCGAGGTCATCCACCTGCCCGTTACCGGTACGTGCTACTTGCCGTCC TGTGCAAGCCCCTCCTCCTACCATCCCTTCCCACATCTATTTGAATCGCC AATGCACCATCGCCAGTTACCTCTAGGCCTCCCTCCCACCCCTCCCACCC CTTCCTCCCTCAGTCCCCCTGGAGGTGATCATCACGCGCATCATCACCAG CCAAGGCCGCGTCTCCTCTTGGGCGCAGGCCACGAAGGAGCTGCTGGAGG AAAACGGGGTTAAAGGCTTGTACAAAGGCATCACCACATATGTGAGGAGG GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCAGGATTTGTGTACAA TCTACTCCTGCATCCACTTGTGTGTCCGAAGAAGTCCTCCCTTCGCGCCA TACTTCCTCTGCCTCCCTCCCTCCCTCCCTCCCCCCTCTTTTCTCTTAAT CCCTACTTACAGGGCGTCTTGTGCCTGAAGCCAGCCATCCAGTACACGGT CTTCGAGCAGCTCCGACGGGGCATCATCTCCTTCCTCTCGCGGCGACAAG GGGGTGCGCTGGAGGGAGGGCGGGAAGGAGGGAGGGAGATTCATACCTAG AACACATTCTCATTTCTCAACACTTCTTCTCCCCCTCCCTCCTTCCCTCC CTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCT CCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTC CAGTCCCAGTCAAGGCCCTAACGGCTTGGCAAGCTTTCCTCCTCGGTGCG CTCTCTCGGGCCATCGCCACCCTCCTCGTCTTCCCTTTCATACGTGTCCG CAAAGTGCTCATGGCGCAAAGCAAGGGCCGCGACGAGGGAGGGAGCGAGG GAGGGAGGGAGGCGGTGGCGGACAGTGCGTGGGTCACCCTCAAGGCGACG GTGAAGGAGGAGGGCGTGCACGGTCTCTACCGAGGTGAGTCATATTGATG GACAGTGCTCTTTGCCCTCCCTCGTCATCGCCTTCCCCCCCTTCCCCTAT TCCTCTGCCCTTGCGTCCTCCATCCTCATCCCCGCCGTTTTTCCTCCCTC TTTCCTTCCTCTTTGGCTTCCTCCTCCCCTCCCTCCCCTCCCTCCTCCTT CCCAGGCATGGCCCCGGAGCTGACCC
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Coding sequence (CDS) from alignment at scaffold_38:133985..136060+

>mRNA_9692 ID=mRNA_9692|Name=jgi.p|Nanoce1779_2|633588|organism=Nannochloropsis oceanica|type=CDS|length=5994bp|location=Sequence derived from alignment at scaffold_38:133985..136060+ (Nannochloropsis oceanica)
ATGAACTCCCCGGAGGTGCTGGCCGAAGCCTTGTCCGCGGCAGAAGGTGG
CGCCATTTCCACCGCTGTGCTTTATCCGCTTGAGGTAATTAAGACCGTCA
TCCAAGCCAGCAAGGGCAAGAAAAAGGCAGAGACAAAGCCGTCAGCTGCG
AGTAGCTCGACCTGGAATGAAGAGCAAGCACGGGCTGAAGAAGGTGAAGC
CAGCCCCATTGCTGCTGCCGCCGCTGCCACCGTCACTGCCATCACTCTTG
CTTCTGGCAGCGCGGCGGAGAAAGAGAGGAAGGGAGGGGAGGATGCAGCC
AAGCCCTTGACAAGCCGCGAGGTGGCCCAGGACATTTACAAGCGGGCGGG
CGTGACGGGATTCTTCGGTGGGGTCCAGTACGCGTCGCTGCAAAGTGCGT
TGGAAAAATCGATTTATTTTTATGCCTACAGCACTATGAAGGGCATCACC
AAGCTGCTGAATGGCGGCAGGTTCGGAGTGCGTGAGAACCTGATCGTCGG
ATACCTGAGCGAGGTCATCCACCTGCCCGTTACCGTCCCCCTGGAGGTGA
TCATCACGCGCATCATCACCAGCCAAGGCCGCGTCTCCTCTTGGGCGCAG
GCCACGAAGGAGCTGCTGGAGGAAAACGGGGTTAAAGGCTTGTACAAAGG
CATCACCACATATGGCGTCTTGTGCCTGAAGCCAGCCATCCAGTACACGG
TCTTCGAGCAGCTCCGACGGGGCATCATCTCCTTCCTCTCGCGGCGACAA
GGGGTCCCAGTCAAGGCCCTAACGGCTTGGCAAGCTTTCCTCCTCGGTGC
GCTCTCTCGGGCCATCGCCACCCTCCTCGTCTTCCCTTTCATACGTGTCC
GCAAAGTGCTCATGGCGCAAAGCAAGGGCCGCGACGAGGGAGGGAGCGAG
GGAGGGAGGGAGGCGGTGGCGGACAGTGCGTGGGTCACCCTCAAGGCGAC
GGTGAAGGAGGAGGGCGTGCACGGTCTCTACCGAGGTGAGTCATATTGAA
TGAACTCCCCGGAGGTGCTGGCCGAAGCCTTGTCCGCGGCAGAAGGTGGC
GCCATTTCCACCGCTGTGCTTTATCCGCTTGAGGTAATTAAGACCGTCAT
CCAAGCCAGCAAGGGCAAGAAAAAGGCAGAGACAAAGCCGTCAGCTGCGA
GTAGCTCGACCTGGAATGAAGAGCAAGCACGGGCTGAAGAAGGTGAAGCC
AGCCCCATTGCTGCTGCCGCCGCTGCCACCGTCACTGCCATCACTCTTGC
TTCTGGCAGCGCGGCGGAGAAAGAGAGGAAGGGAGGGGAGGATGCAGCCA
AGCCCTTGACAAGCCGCGAGGTGGCCCAGGACATTTACAAGCGGGCGGGC
GTGACGGGATTCTTCGGTGGGGTCCAGTACGCGTCGCTGCAAAGTGCGTT
GGAAAAATCGATTTATTTTTATGCCTACAGCACTATGAAGGGCATCACCA
AGCTGCTGAATGGCGGCAGGTTCGGAGTGCGTGAGAACCTGATCGTCGGA
TACCTGAGCGAGGTCATCCACCTGCCCGTTACCGTCCCCCTGGAGGTGAT
CATCACGCGCATCATCACCAGCCAAGGCCGCGTCTCCTCTTGGGCGCAGG
CCACGAAGGAGCTGCTGGAGGAAAACGGGGTTAAAGGCTTGTACAAAGGC
ATCACCACATATGGCGTCTTGTGCCTGAAGCCAGCCATCCAGTACACGGT
CTTCGAGCAGCTCCGACGGGGCATCATCTCCTTCCTCTCGCGGCGACAAG
GGGTCCCAGTCAAGGCCCTAACGGCTTGGCAAGCTTTCCTCCTCGGTGCG
CTCTCTCGGGCCATCGCCACCCTCCTCGTCTTCCCTTTCATACGTGTCCG
CAAAGTGCTCATGGCGCAAAGCAAGGGCCGCGACGAGGGAGGGAGCGAGG
GAGGGAGGGAGGCGGTGGCGGACAGTGCGTGGGTCACCCTCAAGGCGACG
GTGAAGGAGGAGGGCGTGCACGGTCTCTACCGAGGTGAGTCATATTGAAT
GAACTCCCCGGAGGTGCTGGCCGAAGCCTTGTCCGCGGCAGAAGGTGGCG
CCATTTCCACCGCTGTGCTTTATCCGCTTGAGGTAATTAAGACCGTCATC
CAAGCCAGCAAGGGCAAGAAAAAGGCAGAGACAAAGCCGTCAGCTGCGAG
TAGCTCGACCTGGAATGAAGAGCAAGCACGGGCTGAAGAAGGTGAAGCCA
GCCCCATTGCTGCTGCCGCCGCTGCCACCGTCACTGCCATCACTCTTGCT
TCTGGCAGCGCGGCGGAGAAAGAGAGGAAGGGAGGGGAGGATGCAGCCAA
GCCCTTGACAAGCCGCGAGGTGGCCCAGGACATTTACAAGCGGGCGGGCG
TGACGGGATTCTTCGGTGGGGTCCAGTACGCGTCGCTGCAAAGTGCGTTG
GAAAAATCGATTTATTTTTATGCCTACAGCACTATGAAGGGCATCACCAA
GCTGCTGAATGGCGGCAGGTTCGGAGTGCGTGAGAACCTGATCGTCGGAT
ACCTGAGCGAGGTCATCCACCTGCCCGTTACCGTCCCCCTGGAGGTGATC
ATCACGCGCATCATCACCAGCCAAGGCCGCGTCTCCTCTTGGGCGCAGGC
CACGAAGGAGCTGCTGGAGGAAAACGGGGTTAAAGGCTTGTACAAAGGCA
TCACCACATATGGCGTCTTGTGCCTGAAGCCAGCCATCCAGTACACGGTC
TTCGAGCAGCTCCGACGGGGCATCATCTCCTTCCTCTCGCGGCGACAAGG
GGTCCCAGTCAAGGCCCTAACGGCTTGGCAAGCTTTCCTCCTCGGTGCGC
TCTCTCGGGCCATCGCCACCCTCCTCGTCTTCCCTTTCATACGTGTCCGC
AAAGTGCTCATGGCGCAAAGCAAGGGCCGCGACGAGGGAGGGAGCGAGGG
AGGGAGGGAGGCGGTGGCGGACAGTGCGTGGGTCACCCTCAAGGCGACGG
TGAAGGAGGAGGGCGTGCACGGTCTCTACCGAGGTGAGTCATATTGAATG
AACTCCCCGGAGGTGCTGGCCGAAGCCTTGTCCGCGGCAGAAGGTGGCGC
CATTTCCACCGCTGTGCTTTATCCGCTTGAGGTAATTAAGACCGTCATCC
AAGCCAGCAAGGGCAAGAAAAAGGCAGAGACAAAGCCGTCAGCTGCGAGT
AGCTCGACCTGGAATGAAGAGCAAGCACGGGCTGAAGAAGGTGAAGCCAG
CCCCATTGCTGCTGCCGCCGCTGCCACCGTCACTGCCATCACTCTTGCTT
CTGGCAGCGCGGCGGAGAAAGAGAGGAAGGGAGGGGAGGATGCAGCCAAG
CCCTTGACAAGCCGCGAGGTGGCCCAGGACATTTACAAGCGGGCGGGCGT
GACGGGATTCTTCGGTGGGGTCCAGTACGCGTCGCTGCAAAGTGCGTTGG
AAAAATCGATTTATTTTTATGCCTACAGCACTATGAAGGGCATCACCAAG
CTGCTGAATGGCGGCAGGTTCGGAGTGCGTGAGAACCTGATCGTCGGATA
CCTGAGCGAGGTCATCCACCTGCCCGTTACCGTCCCCCTGGAGGTGATCA
TCACGCGCATCATCACCAGCCAAGGCCGCGTCTCCTCTTGGGCGCAGGCC
ACGAAGGAGCTGCTGGAGGAAAACGGGGTTAAAGGCTTGTACAAAGGCAT
CACCACATATGGCGTCTTGTGCCTGAAGCCAGCCATCCAGTACACGGTCT
TCGAGCAGCTCCGACGGGGCATCATCTCCTTCCTCTCGCGGCGACAAGGG
GTCCCAGTCAAGGCCCTAACGGCTTGGCAAGCTTTCCTCCTCGGTGCGCT
CTCTCGGGCCATCGCCACCCTCCTCGTCTTCCCTTTCATACGTGTCCGCA
AAGTGCTCATGGCGCAAAGCAAGGGCCGCGACGAGGGAGGGAGCGAGGGA
GGGAGGGAGGCGGTGGCGGACAGTGCGTGGGTCACCCTCAAGGCGACGGT
GAAGGAGGAGGGCGTGCACGGTCTCTACCGAGGTGAGTCATATTGAATGA
ACTCCCCGGAGGTGCTGGCCGAAGCCTTGTCCGCGGCAGAAGGTGGCGCC
ATTTCCACCGCTGTGCTTTATCCGCTTGAGGTAATTAAGACCGTCATCCA
AGCCAGCAAGGGCAAGAAAAAGGCAGAGACAAAGCCGTCAGCTGCGAGTA
GCTCGACCTGGAATGAAGAGCAAGCACGGGCTGAAGAAGGTGAAGCCAGC
CCCATTGCTGCTGCCGCCGCTGCCACCGTCACTGCCATCACTCTTGCTTC
TGGCAGCGCGGCGGAGAAAGAGAGGAAGGGAGGGGAGGATGCAGCCAAGC
CCTTGACAAGCCGCGAGGTGGCCCAGGACATTTACAAGCGGGCGGGCGTG
ACGGGATTCTTCGGTGGGGTCCAGTACGCGTCGCTGCAAAGTGCGTTGGA
AAAATCGATTTATTTTTATGCCTACAGCACTATGAAGGGCATCACCAAGC
TGCTGAATGGCGGCAGGTTCGGAGTGCGTGAGAACCTGATCGTCGGATAC
CTGAGCGAGGTCATCCACCTGCCCGTTACCGTCCCCCTGGAGGTGATCAT
CACGCGCATCATCACCAGCCAAGGCCGCGTCTCCTCTTGGGCGCAGGCCA
CGAAGGAGCTGCTGGAGGAAAACGGGGTTAAAGGCTTGTACAAAGGCATC
ACCACATATGGCGTCTTGTGCCTGAAGCCAGCCATCCAGTACACGGTCTT
CGAGCAGCTCCGACGGGGCATCATCTCCTTCCTCTCGCGGCGACAAGGGG
TCCCAGTCAAGGCCCTAACGGCTTGGCAAGCTTTCCTCCTCGGTGCGCTC
TCTCGGGCCATCGCCACCCTCCTCGTCTTCCCTTTCATACGTGTCCGCAA
AGTGCTCATGGCGCAAAGCAAGGGCCGCGACGAGGGAGGGAGCGAGGGAG
GGAGGGAGGCGGTGGCGGACAGTGCGTGGGTCACCCTCAAGGCGACGGTG
AAGGAGGAGGGCGTGCACGGTCTCTACCGAGGTGAGTCATATTGAATGAA
CTCCCCGGAGGTGCTGGCCGAAGCCTTGTCCGCGGCAGAAGGTGGCGCCA
TTTCCACCGCTGTGCTTTATCCGCTTGAGGTAATTAAGACCGTCATCCAA
GCCAGCAAGGGCAAGAAAAAGGCAGAGACAAAGCCGTCAGCTGCGAGTAG
CTCGACCTGGAATGAAGAGCAAGCACGGGCTGAAGAAGGTGAAGCCAGCC
CCATTGCTGCTGCCGCCGCTGCCACCGTCACTGCCATCACTCTTGCTTCT
GGCAGCGCGGCGGAGAAAGAGAGGAAGGGAGGGGAGGATGCAGCCAAGCC
CTTGACAAGCCGCGAGGTGGCCCAGGACATTTACAAGCGGGCGGGCGTGA
CGGGATTCTTCGGTGGGGTCCAGTACGCGTCGCTGCAAAGTGCGTTGGAA
AAATCGATTTATTTTTATGCCTACAGCACTATGAAGGGCATCACCAAGCT
GCTGAATGGCGGCAGGTTCGGAGTGCGTGAGAACCTGATCGTCGGATACC
TGAGCGAGGTCATCCACCTGCCCGTTACCGTCCCCCTGGAGGTGATCATC
ACGCGCATCATCACCAGCCAAGGCCGCGTCTCCTCTTGGGCGCAGGCCAC
GAAGGAGCTGCTGGAGGAAAACGGGGTTAAAGGCTTGTACAAAGGCATCA
CCACATATGGCGTCTTGTGCCTGAAGCCAGCCATCCAGTACACGGTCTTC
GAGCAGCTCCGACGGGGCATCATCTCCTTCCTCTCGCGGCGACAAGGGGT
CCCAGTCAAGGCCCTAACGGCTTGGCAAGCTTTCCTCCTCGGTGCGCTCT
CTCGGGCCATCGCCACCCTCCTCGTCTTCCCTTTCATACGTGTCCGCAAA
GTGCTCATGGCGCAAAGCAAGGGCCGCGACGAGGGAGGGAGCGAGGGAGG
GAGGGAGGCGGTGGCGGACAGTGCGTGGGTCACCCTCAAGGCGACGGTGA
AGGAGGAGGGCGTGCACGGTCTCTACCGAGGTGAGTCATATTGA
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Synonyms
Publications