jgi.p|Nanoce1779_2|633587, mRNA_9691 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633587
Unique NamemRNA_9691
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length771
Alignment locationscaffold_38:132638..133614 +

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Properties
Property NameValue
TranscriptId633673
TrackFilteredModels2
ProteinId633587
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:132638..133614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633587gene_9691Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633587mRNA_9691-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9691CDS_9691Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9691 ID=mRNA_9691|Name=jgi.p|Nanoce1779_2|633587|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
GGAGGGGTGCCTGAGGAGGGGTTGAGTGTGGAAGAGAAAATTCAGTTGAG
CATGGCACAGGGGGATTTTGACGATTTAAAAGGCAAGGGAAAGCCGTTGG
AGAAATTCGACGTTCATCATTATGCGACGGACAAAACCAGCGCCACCTAC
ATGGACGTGCTAGCCAAGTCAGGCGTGAAGCCCGTGTGGATTGAGAGGTC
CCTCCGGATAAAGGAGGCAGAGAAAAGGGTGTTGAAGAGATTGGAGGGAG
AGTGGGCCAAGGTGGTGTTGGAGATTTGGGAAGAGGAGGAGAAGGGAAAA
GGGAAGGGAGGGAGGGCGGGAGGGAGGTCACAGTGGAGGGAGAGGGTCCT
GGGGATGAGGTGTTTGAGGGAGGACTTGGCCTGGGTGAATGCGGAGATTG
ATTTGTATAATCTACAGGTGCCCTCCATGTCCTTACAGCGAATGAGATTA
AAGCTGGACCATTTGTGTGAGGCAGTGGAGGAGCGAGTGGGGGGAGGGGG
GGGGTGGATGGACAAGACCACGGCAAGGGCTGTAGTGAGAGAGGGGGAGA
AGGAAGGGATGTTCAGTAATGTGACAGCGCTGGGCTCGTTGCGGCTAGAG
GCGGAGGAGCTGAAGAAAACCAAGAGGAAAGATGGGAAGGGCAGTGGTGG
GGGATCGGACATCTGGGGTGGAGGTGGAAGCCCAAGCGGGGCCAAGGCGG
GGGCAGGAAGAGGAGGGGGGATGCTCGATACGATAACCTCGTGGTTCTCG
ATGGGCCAAACAAAGCCATGA
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protein sequence of jgi.p|Nanoce1779_2|633587

>mRNA_9691-protein ID=mRNA_9691-protein|Name=jgi.p|Nanoce1779_2|633587|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MAQGDFDDLKGKGKPLEKFDVHHYATDKTSATYMDVLAKSGVKPVWIERS
LRIKEAEKRVLKRLEGEWAKVVLEIWEEEEKGKGKGGRAGGRSQWRERVL
GMRCLREDLAWVNAEIDLYNLQVPSMSLQRMRLKLDHLCEAVEERVGGGG
GWMDKTTARAVVREGEKEGMFSNVTALGSLRLEAEELKKTKRKDGKGSGG
GSDIWGGGGSPSGAKAGAGRGGGMLDTITSWFSMGQTKP*
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mRNA from alignment at scaffold_38:132638..133614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9691 ID=mRNA_9691|Name=jgi.p|Nanoce1779_2|633587|organism=Nannochloropsis oceanica|type=mRNA|length=977bp|location=Sequence derived from alignment at scaffold_38:132638..133614+ (Nannochloropsis oceanica)
GGAGGGGTGCCTGAGGAGGGGTTGAGTGTGGAAGAGAAAATTCAGTTGAG
CATGGCACAGGGGGATTTTGACGATTTAAAAGGCAAGGGAAAGCCGTTGG
AGAAATTCGACGGTACGTCTGGTTGAAAGATGGGAGGAGAGGGAGGGCGG
GAGGGAGGGAGGAAGACAGGAATAATTGTTTCTAGGTTCTGTTGTTTGCT
CTCCTCGAGTGGTGGTGCAGTGGGATGCCGTTCCTTTCTTTTACCCTTCA
AAATTTGATTTCTGCGTTGTCAACTCAATTTCCCCTTCCTCTCTCCCTCC
CTCCCTCCCTTCCCTCAGTTCATCATTATGCGACGGACAAAACCAGCGCC
ACCTACATGGACGTGCTAGCCAAGTCAGGCGTGAAGCCCGTGTGGATTGA
GAGGTCCCTCCGGATAAAGGAGGCAGAGAAAAGGGTGTTGAAGAGATTGG
AGGGAGAGTGGGCCAAGGTGGTGTTGGAGATTTGGGAAGAGGAGGAGAAG
GGAAAAGGGAAGGGAGGGAGGGCGGGAGGGAGGTCACAGTGGAGGGAGAG
GGTCCTGGGGATGAGGTGTTTGAGGGAGGACTTGGCCTGGGTGAATGCGG
AGATTGATTTGTATAATCTACAGGTGCCCTCCATGTCCTTACAGCGAATG
AGATTAAAGCTGGACCATTTGTGTGAGGCAGTGGAGGAGCGAGTGGGGGG
AGGGGGGGGGTGGATGGACAAGACCACGGCAAGGGCTGTAGTGAGAGAGG
GGGAGAAGGAAGGGATGTTCAGTAATGTGACAGCGCTGGGCTCGTTGCGG
CTAGAGGCGGAGGAGCTGAAGAAAACCAAGAGGAAAGATGGGAAGGGCAG
TGGTGGGGGATCGGACATCTGGGGTGGAGGTGGAAGCCCAAGCGGGGCCA
AGGCGGGGGCAGGAAGAGGAGGGGGGATGCTCGATACGATAACCTCGTGG
TTCTCGATGGGCCAAACAAAGCCATGA
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Coding sequence (CDS) from alignment at scaffold_38:132638..133614+

>mRNA_9691 ID=mRNA_9691|Name=jgi.p|Nanoce1779_2|633587|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_38:132638..133614+ (Nannochloropsis oceanica)
ATGGCACAGGGGGATTTTGACGATTTAAAAGGCAAGGGAAAGCCGTTGGA
GAAATTCGACGTTCATCATTATGCGACGGACAAAACCAGCGCCACCTACA
TGGACGTGCTAGCCAAGTCAGGCGTGAAGCCCGTGTGGATTGAGAGGTCC
CTCCGGATAAAGGAGGCAGAGAAAAGGGTGTTGAAGAGATTGGAGGGAGA
GTGGGCCAAGGTGGTGTTGGAGATTTGGGAAGAGGAGGAGAAGGGAAAAG
GGAAGGGAGGGAGGGCGGGAGGGAGGTCACAGTGGAGGGAGAGGGTCCTG
GGGATGAGGTGTTTGAGGGAGGACTTGGCCTGGGTGAATGCGGAGATTGA
TTTGTATAATCTACAGGTGCCCTCCATGTCCTTACAGCGAATGAGATTAA
AGCTGGACCATTTGTGTGAGGCAGTGGAGGAGCGAGTGGGGGGAGGGGGG
GGGTGGATGGACAAGACCACGGCAAGGGCTGTAGTGAGAGAGGGGGAGAA
GGAAGGGATGTTCAGTAATGTGACAGCGCTGGGCTCGTTGCGGCTAGAGG
CGGAGGAGCTGAAGAAAACCAAGAGGAAAGATGGGAAGGGCAGTGGTGGG
GGATCGGACATCTGGGGTGGAGGTGGAAGCCCAAGCGGGGCCAAGGCGGG
GGCAGGAAGAGGAGGGGGGATGCTCGATACGATAACCTCGTGGTTCTCGA
TGGGCCAAACAAAGCCATGAATGGCACAGGGGGATTTTGACGATTTAAAA
GGCAAGGGAAAGCCGTTGGAGAAATTCGACGTTCATCATTATGCGACGGA
CAAAACCAGCGCCACCTACATGGACGTGCTAGCCAAGTCAGGCGTGAAGC
CCGTGTGGATTGAGAGGTCCCTCCGGATAAAGGAGGCAGAGAAAAGGGTG
TTGAAGAGATTGGAGGGAGAGTGGGCCAAGGTGGTGTTGGAGATTTGGGA
AGAGGAGGAGAAGGGAAAAGGGAAGGGAGGGAGGGCGGGAGGGAGGTCAC
AGTGGAGGGAGAGGGTCCTGGGGATGAGGTGTTTGAGGGAGGACTTGGCC
TGGGTGAATGCGGAGATTGATTTGTATAATCTACAGGTGCCCTCCATGTC
CTTACAGCGAATGAGATTAAAGCTGGACCATTTGTGTGAGGCAGTGGAGG
AGCGAGTGGGGGGAGGGGGGGGGTGGATGGACAAGACCACGGCAAGGGCT
GTAGTGAGAGAGGGGGAGAAGGAAGGGATGTTCAGTAATGTGACAGCGCT
GGGCTCGTTGCGGCTAGAGGCGGAGGAGCTGAAGAAAACCAAGAGGAAAG
ATGGGAAGGGCAGTGGTGGGGGATCGGACATCTGGGGTGGAGGTGGAAGC
CCAAGCGGGGCCAAGGCGGGGGCAGGAAGAGGAGGGGGGATGCTCGATAC
GATAACCTCGTGGTTCTCGATGGGCCAAACAAAGCCATGA
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Synonyms
Publications