jgi.p|Nanoce1779_2|607364, mRNA_9688 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607364
Unique NamemRNA_9688
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length758
Alignment locationscaffold_38:115233..116428 -

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Properties
Property NameValue
TranscriptId607450
TrackFilteredModels2
ProteinId607364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:115233..116428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607364gene_9688Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607364mRNA_9688-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9688CDS_9688Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9688 ID=mRNA_9688|Name=jgi.p|Nanoce1779_2|607364|organism=Nannochloropsis oceanica|type=mRNA|length=758bp
ACAGCCATGGCAGCCGGCGAAAGTGGCCTGGATGATGAGCTAGCCGCGCT
CACATTTGAGATCGAGGGCGGCGGCTACAACAACGGAGGGGGGCAAGAAG
GCAGCGGAGGCCTTGTTCCGCGAGATGGGAGAAGGGGGGGGCGGTCCATG
GCCCCGGGTAGCAAGAACGTCGTCTGCATCCACTACCTAGTGGGCATGTG
TGCCTTGGACAAAGACTGTCCCTATTTGCACCAGTATGACCTGGACCGGG
TGCCAATCTGCCCGTTTGGCAGCAAATGCGTGCGCGACGACGACTGCCCT
TTCAAGCATGTCACCGAGGAGGACAAGACGGAGTGCGTATTCTACAGGCA
GGGTTTTTGCATGTACGGGCCCTTCTGCCGGTACGAGGAATGAAGGAGAG
GGAGAGAGGGAGGAAGATGTGAATGCATACCTGGATGATGGATGGATGAA
GCAGTTGGTGGTATGCTTTCCTTAGCCCGAGAATGATTTATTGCACGCGC
GTTGCGGCGTGTCATGAATGTAGGGCGGCGTGTAAAGGGATTAGGGTCAT
TTTCATTCCCACCCTGGGCGCTCTTAGATTCCGCCCCTCACCCTCTCCAC
TGCCTACGACCCTCACCTGCTCCGAGCCCTCCTCCTCCTCTTTTACCTCA
TCTTCTCTCTTCAGCTCTGCTCCCCCCACCCATTTTGTCATCATTGCCAT
CCTCAACCCATCCCGAGGTGCCAGCCCCCAATTTTTATGTCCCAACACTC
ACCGCCCC
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protein sequence of jgi.p|Nanoce1779_2|607364

>mRNA_9688-protein ID=mRNA_9688-protein|Name=jgi.p|Nanoce1779_2|607364|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MAAGESGLDDELAALTFEIEGGGYNNGGGQEGSGGLVPRDGRRGGRSMAP
GSKNVVCIHYLVGMCALDKDCPYLHQYDLDRVPICPFGSKCVRDDDCPFK
HVTEEDKTECVFYRQGFCMYGPFCRYEE*
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mRNA from alignment at scaffold_38:115233..116428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9688 ID=mRNA_9688|Name=jgi.p|Nanoce1779_2|607364|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp|location=Sequence derived from alignment at scaffold_38:115233..116428- (Nannochloropsis oceanica)
ACAGCCATGGCAGCCGGCGAAAGTGGCCTGGATGATGAGCTAGCCGCGCT
CACATTTGAGATCGAGGGCGGCGGCTACAACAACGGAGGGGGGCAAGAAG
GCAGCGGAGGCCTTGTTCCGCGAGATGGGAGAAGGGGGGGGCGGTCCATG
GCCCCGGGTAGCAAGAACGTCGTCTGCATCCACTACCTAGTGGGCATGTG
TGCCTTGGACAAAGACTGTCCCTATTTGCACCAGTATGACCTGGACCGGG
TGCCAATCTGCCCGTACGTGCTTGGGAGGGAGGACGGAGGGGACGCGTGT
CATACCGATGATGACGGACATCTATCTGACCTTGCTTTCCTACTTCCACA
CTTTCCTAGGTTTGGCAGCAAATGCGTGCGCGACGACGACTGCCCTTTCA
AGCATGTCACCGAGGTAAGGGTGGCGGGGAGAGTGTATAGGAGGGAAGCC
GGGCGGGACGGGGGGGATGGAATCTCGTCCTGAATTTGGAAGTGGAATCG
AATGAAAACGATTCGTCGCCCACTCGGAAGAAGCATGAGGGACGAAGAGA
GAATGGAGCGAAGATGAAGTAAGGCTAGAGAGGGGACAAGAAAGACAGTA
GGACCAACAAAGAGGGAGGGAAGGAGGAAGGGAGGGAGGATTCAATGCGG
GGAGGTGGCTTACAGTCCTGGACGGCGGCAATATTGAGCTTTGTGATTTT
CTCACTGAACTCCCTCTTTCCCCTCTCTTCCTTTTATCTCTTTTGCATGC
ACTCAGGAGGACAAGACGGAGTGCGTATTCTACAGGCAGGGTTTTTGCAT
GTACGGGCCCTTCTGCCGGTACGAGGAATGAAGGAGAGGGAGAGAGGGAG
GAAGATGTGAATGCATACCTGGATGATGGATGGATGAAGCAGTTGGTGGT
ATGCTTTCCTTAGCCCGAGAATGATTTATTGCACGCGCGTTGCGGCGTGT
CATGAATGTAGGGCGGCGTGTAAAGGGATTAGGGTCATTTTCATTCCCAC
CCTGGGCGCTCTTAGATTCCGCCCCTCACCCTCTCCACTGCCTACGACCC
TCACCTGCTCCGAGCCCTCCTCCTCCTCTTTTACCTCATCTTCTCTCTTC
AGCTCTGCTCCCCCCACCCATTTTGTCATCATTGCCATCCTCAACCCATC
CCGAGGTGCCAGCCCCCAATTTTTATGTCCCAACACTCACCGCCCC
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Coding sequence (CDS) from alignment at scaffold_38:115233..116428-

>mRNA_9688 ID=mRNA_9688|Name=jgi.p|Nanoce1779_2|607364|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_38:115233..116428- (Nannochloropsis oceanica)
GAGGACAAGACGGAGTGCGTATTCTACAGGCAGGGTTTTTGCATGTACGG
GCCCTTCTGCCGGTACGAGGAATGAGTTTGGCAGCAAATGCGTGCGCGAC
GACGACTGCCCTTTCAAGCATGTCACCGAGATGGCAGCCGGCGAAAGTGG
CCTGGATGATGAGCTAGCCGCGCTCACATTTGAGATCGAGGGCGGCGGCT
ACAACAACGGAGGGGGGCAAGAAGGCAGCGGAGGCCTTGTTCCGCGAGAT
GGGAGAAGGGGGGGGCGGTCCATGGCCCCGGGTAGCAAGAACGTCGTCTG
CATCCACTACCTAGTGGGCATGTGTGCCTTGGACAAAGACTGTCCCTATT
TGCACCAGTATGACCTGGACCGGGTGCCAATCTGCCCGAGGACAAGACGG
AGTGCGTATTCTACAGGCAGGGTTTTTGCATGTACGGGCCCTTCTGCCGG
TACGAGGAATGAGTTTGGCAGCAAATGCGTGCGCGACGACGACTGCCCTT
TCAAGCATGTCACCGAGATGGCAGCCGGCGAAAGTGGCCTGGATGATGAG
CTAGCCGCGCTCACATTTGAGATCGAGGGCGGCGGCTACAACAACGGAGG
GGGGCAAGAAGGCAGCGGAGGCCTTGTTCCGCGAGATGGGAGAAGGGGGG
GGCGGTCCATGGCCCCGGGTAGCAAGAACGTCGTCTGCATCCACTACCTA
GTGGGCATGTGTGCCTTGGACAAAGACTGTCCCTATTTGCACCAGTATGA
CCTGGACCGGGTGCCAATCTGCCCGAGGACAAGACGGAGTGCGTATTCTA
CAGGCAGGGTTTTTGCATGTACGGGCCCTTCTGCCGGTACGAGGAATGAG
TTTGGCAGCAAATGCGTGCGCGACGACGACTGCCCTTTCAAGCATGTCAC
CGAGATGGCAGCCGGCGAAAGTGGCCTGGATGATGAGCTAGCCGCGCTCA
CATTTGAGATCGAGGGCGGCGGCTACAACAACGGAGGGGGGCAAGAAGGC
AGCGGAGGCCTTGTTCCGCGAGATGGGAGAAGGGGGGGGCGGTCCATGGC
CCCGGGTAGCAAGAACGTCGTCTGCATCCACTACCTAGTGGGCATGTGTG
CCTTGGACAAAGACTGTCCCTATTTGCACCAGTATGACCTGGACCGGGTG
CCAATCTGCCC
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Synonyms
Publications