jgi.p|Nanoce1779_2|280466, mRNA_9687 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|280466
Unique NamemRNA_9687
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1231
Alignment locationscaffold_38:112379..114150 -

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Properties
Property NameValue
TranscriptId280552
TrackFilteredModels2
ProteinId280466
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:112379..114150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280466gene_9687Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280466mRNA_9687-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9687CDS_9687Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9687 ID=mRNA_9687|Name=jgi.p|Nanoce1779_2|280466|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp
GGGAGGGAGAGGAATGAAGGAAGGGAAAAGGTGACTCCACCAAGACGTGT
CTCTGCACACGCTCTCACTCACGGATGTCTCTTCAAGGTGTTTGTCGTGC
TGTGGTACTCGTCCTTCTCCACCCAACGTGTCCTCACATTCGCCCGACTC
CCTAATCAAATCCGCCCCTTCCCAGGTGCTGGGGGTCTCTACGGCAACGG
CGCCGGTGGAGCTGGCAGCCTGACCGGAGCCTCCCTCGGAGGAGTGGGGG
GGATGGGAGGAGGGGCGGGGGGAGCACTGTTTAGGGGGGCGGGCATGGGC
ACGGGGAATGGAGGGATGCCTGGACCGCTTATTCCGGCGCCGCATGAGAT
CCGGTTCGTGGACCTGGGCATTCCCTGGCCGGAGCAAGCCCGCGTCCGTT
TCTTCGTCATTAAGAGCCTCAACTACAAAAATTTGGCGCAGAGTGTACGG
AGGGGCGTTTGGCGCACGCACCGCAACAACGAGCGGACATTGAACGAGGC
CTTCCGCACCTGCGACAAGGTCGTCCTCTTCTTCTCGGTCAACGAGTCGG
GCCACTGGCAGGGTGCCGCCGTCATGTCCTCCCTCATCCGCTCCCAGCCA
CACCCGCAACATTTGGCTCCCCTGCAGCTCCTCCAACACCACCAGGACGG
CTGGACTGCAGAGTTCTCCCTGGAGTGGCTGCGGCTGGTGTCCTTGCCCT
TCCCCCACACGCGGCCCCTCCGGAACCCCCTCAACGACAACCTCCCCATC
TCCCGCTCACGCGATTGCCAGGAGCTGACCCCCGACATCGGTCGACAACT
GCTTTATCTCATCTACGCCTCCGCTGAGGTTTCTCTGGCCTTGGCCGGCG
CCGAGGCCAGCATGCCGCCTGTAAGGACTCCCTCCATCCCTCCCTCCCTC
CCTCCCTCCCCTTGCCGTTTTCCATCCTCTCACGTCCTTCCCTTCCTTCC
TTCCCTTCCTCCCTTCCCTCCTCCTCCTTCCTCATCTTCCGCGTCCCGGT
AGGCCGGAGGTGACGGTGGTGCGGGTGGAGGTCCCTTTGGTTATGGCGGC
GGCGGACTGATGGATGGGGGAGGAGGAGGAGGCGGAGGTGAAGGAGGGGG
AGGGGGTGGGTTGCAGCAGCAGGAGCAGGAGCAGCAGTACATGAGTGGTG
GTGGTGGAGGAGGAGGAGGAGGAGGAGGAGTGCAACAAGGAGGGGAGACG
CGGGGAGGGGCCTTGGGAGGGGGGCGGAATT
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protein sequence of jgi.p|Nanoce1779_2|280466

>mRNA_9687-protein ID=mRNA_9687-protein|Name=jgi.p|Nanoce1779_2|280466|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MGGGAGGALFRGAGMGTGNGGMPGPLIPAPHEIRFVDLGIPWPEQARVRF
FVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFFSVNESG
HWQGAAVMSSLIRSQPHPQHLAPLQLLQHHQDGWTAEFSLEWLRLVSLPF
PHTRPLRNPLNDNLPISRSRDCQELTPDIGRQLLYLIYASAEVSLALAGA
EASMPPVRTPSIPPSLPPSPCRFPSSHVLPFLPSLPPFPPPPSSSSASR*
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mRNA from alignment at scaffold_38:112379..114150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9687 ID=mRNA_9687|Name=jgi.p|Nanoce1779_2|280466|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at scaffold_38:112379..114150- (Nannochloropsis oceanica)
GGGAGGGAGAGGAATGAAGGAAGGGAAAAGGTGACTCCACCAAGACGTGT
CTCTGCACACGCTCTCACTCACGGATGTCTCTTCAAGGTGTTTGTCGTGC
TGTGGTACTCGTCCTTCTCCACCCAACGTGTCCTCACATTCGCCCGACTC
CCTAATCAAATCCGCCCCTTCCCAGGTGCTGGGGGTCTCTACGGCAACGG
CGCCGGTGGAGCTGGCAGCCTGACCGGAGCCTCCCTCGGAGGAGTGGGGG
GGATGGGAGGAGGGGCGGGGGGAGCACTGTTTAGGGGGGCGGGCATGGGC
ACGGGGAATGGAGGGATGCCTGGACCGCTTATTCCGGCGCCGCATGAGGT
GAGGGAGGGAGAGAGAGAGGGGGGGAGGGAGGGAGGGGGGGTGGGAGGGA
GAAAGGATGCGAAGGCTTTCAAAAGAGCAGAAAGTACTGGATTTATTTTC
GTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGATCCGGTTC
GTGGACCTGGGCATTCCCTGGCCGGAGCAAGCCCGCGTCCGTTTCTTCGT
CATTAAGAGCCTCAACTACAAAAATTTGGCGCAGAGTGTACGGAGGGGCG
TTTGGCGCACGCACCGCAACAACGAGCGGACATTGAACGAGGTGGGTGCG
CCTCAGCATCCCCTTTCCCTCCCTCCCCCCCCTCCCTCCCTTCCTTGCTC
CCACGGGGACTTTCTATCTCTTTCTCCTTCGGCCGTTTCCTCATCAAGGT
TGTCCCCGCACCTAACCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTTTTG
CAGGCCTTCCGCACCTGCGACAAGGTCGTCCTCTTCTTCTCGGTCAACGA
GTCGGGCCACTGGCAGGGTGCCGCCGTCATGTCCTCCCTCATCCGCTCCC
AGCCACACCCGCAACATTTGGCTCCCCTGCAGCTCCTCCAACACCACCAG
GACGGTATGTTCCTCCCTAACTCCCTCGAGGCGTATTCTTCTTGCCCCTT
CTGTGCCGGTCTTTTTTCCACGCTCACCCTTCCTCCCTCCCTTTCCCTCC
CTCCCTCAGGCTGGACTGCAGAGTTCTCCCTGGAGTGGCTGCGGCTGGTG
TCCTTGCCCTTCCCCCACACGCGGCCCCTCCGGAACCCCCTCAACGACAA
CCTCCCCATCTCCCGCTCACGGTAACCTCCCTCCCTCCCTCCCTCCCGCC
TTCCCTCCTTGGCCACCCTCCATCCATCCATACACCTCCCCCTCTCCACA
CCACACACATTTACCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTTCCCCC
AGCGATTGCCAGGAGCTGACCCCCGACATCGGTCGACAACTGCTTTATCT
CATCTACGCCTCCGCTGAGGTTTCTCTGGCCTTGGCCGGCGCCGAGGCCA
GCATGCCGCCTGTAAGGACTCCCTCCATCCCTCCCTCCCTCCCTCCCTCC
CCTTGCCGTTTTCCATCCTCTCACGTCCTTCCCTTCCTTCCTTCCCTTCC
TCCCTTCCCTCCTCCTCCTTCCTCATCTTCCGCGTCCCGGTAGGCCGGAG
GTGACGGTGGTGCGGGTGGAGGTCCCTTTGGTTATGGCGGCGGCGGACTG
ATGGATGGGGGAGGAGGAGGAGGCGGAGGTGAAGGAGGGGGAGGGGGTGG
GTTGCAGCAGCAGGAGCAGGAGCAGCAGTACATGAGTGGTGGTGGTGGAG
GAGGAGGAGGAGGAGGAGGAGTGCAACAAGGAGGGGAGACGCGGGGAGGG
GCCTTGGGAGGGGGGCGGAATT
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Coding sequence (CDS) from alignment at scaffold_38:112379..114150-

>mRNA_9687 ID=mRNA_9687|Name=jgi.p|Nanoce1779_2|280466|organism=Nannochloropsis oceanica|type=CDS|length=3750bp|location=Sequence derived from alignment at scaffold_38:112379..114150- (Nannochloropsis oceanica)
CGATTGCCAGGAGCTGACCCCCGACATCGGTCGACAACTGCTTTATCTCA
TCTACGCCTCCGCTGAGGTTTCTCTGGCCTTGGCCGGCGCCGAGGCCAGC
ATGCCGCCTGTAAGGACTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCC
TTGCCGTTTTCCATCCTCTCACGTCCTTCCCTTCCTTCCTTCCCTTCCTC
CCTTCCCTCCTCCTCCTTCCTCATCTTCCGCGTCCCGGTAGGCTGGACTG
CAGAGTTCTCCCTGGAGTGGCTGCGGCTGGTGTCCTTGCCCTTCCCCCAC
ACGCGGCCCCTCCGGAACCCCCTCAACGACAACCTCCCCATCTCCCGCTC
ACGGCCTTCCGCACCTGCGACAAGGTCGTCCTCTTCTTCTCGGTCAACGA
GTCGGGCCACTGGCAGGGTGCCGCCGTCATGTCCTCCCTCATCCGCTCCC
AGCCACACCCGCAACATTTGGCTCCCCTGCAGCTCCTCCAACACCACCAG
GACGATCCGGTTCGTGGACCTGGGCATTCCCTGGCCGGAGCAAGCCCGCG
TCCGTTTCTTCGTCATTAAGAGCCTCAACTACAAAAATTTGGCGCAGAGT
GTACGGAGGGGCGTTTGGCGCACGCACCGCAACAACGAGCGGACATTGAA
CGAGATGGGAGGAGGGGCGGGGGGAGCACTGTTTAGGGGGGCGGGCATGG
GCACGGGGAATGGAGGGATGCCTGGACCGCTTATTCCGGCGCCGCATGAG
CGATTGCCAGGAGCTGACCCCCGACATCGGTCGACAACTGCTTTATCTCA
TCTACGCCTCCGCTGAGGTTTCTCTGGCCTTGGCCGGCGCCGAGGCCAGC
ATGCCGCCTGTAAGGACTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCC
TTGCCGTTTTCCATCCTCTCACGTCCTTCCCTTCCTTCCTTCCCTTCCTC
CCTTCCCTCCTCCTCCTTCCTCATCTTCCGCGTCCCGGTAGGCTGGACTG
CAGAGTTCTCCCTGGAGTGGCTGCGGCTGGTGTCCTTGCCCTTCCCCCAC
ACGCGGCCCCTCCGGAACCCCCTCAACGACAACCTCCCCATCTCCCGCTC
ACGGCCTTCCGCACCTGCGACAAGGTCGTCCTCTTCTTCTCGGTCAACGA
GTCGGGCCACTGGCAGGGTGCCGCCGTCATGTCCTCCCTCATCCGCTCCC
AGCCACACCCGCAACATTTGGCTCCCCTGCAGCTCCTCCAACACCACCAG
GACGATCCGGTTCGTGGACCTGGGCATTCCCTGGCCGGAGCAAGCCCGCG
TCCGTTTCTTCGTCATTAAGAGCCTCAACTACAAAAATTTGGCGCAGAGT
GTACGGAGGGGCGTTTGGCGCACGCACCGCAACAACGAGCGGACATTGAA
CGAGATGGGAGGAGGGGCGGGGGGAGCACTGTTTAGGGGGGCGGGCATGG
GCACGGGGAATGGAGGGATGCCTGGACCGCTTATTCCGGCGCCGCATGAG
CGATTGCCAGGAGCTGACCCCCGACATCGGTCGACAACTGCTTTATCTCA
TCTACGCCTCCGCTGAGGTTTCTCTGGCCTTGGCCGGCGCCGAGGCCAGC
ATGCCGCCTGTAAGGACTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCC
TTGCCGTTTTCCATCCTCTCACGTCCTTCCCTTCCTTCCTTCCCTTCCTC
CCTTCCCTCCTCCTCCTTCCTCATCTTCCGCGTCCCGGTAGGCTGGACTG
CAGAGTTCTCCCTGGAGTGGCTGCGGCTGGTGTCCTTGCCCTTCCCCCAC
ACGCGGCCCCTCCGGAACCCCCTCAACGACAACCTCCCCATCTCCCGCTC
ACGGCCTTCCGCACCTGCGACAAGGTCGTCCTCTTCTTCTCGGTCAACGA
GTCGGGCCACTGGCAGGGTGCCGCCGTCATGTCCTCCCTCATCCGCTCCC
AGCCACACCCGCAACATTTGGCTCCCCTGCAGCTCCTCCAACACCACCAG
GACGATCCGGTTCGTGGACCTGGGCATTCCCTGGCCGGAGCAAGCCCGCG
TCCGTTTCTTCGTCATTAAGAGCCTCAACTACAAAAATTTGGCGCAGAGT
GTACGGAGGGGCGTTTGGCGCACGCACCGCAACAACGAGCGGACATTGAA
CGAGATGGGAGGAGGGGCGGGGGGAGCACTGTTTAGGGGGGCGGGCATGG
GCACGGGGAATGGAGGGATGCCTGGACCGCTTATTCCGGCGCCGCATGAG
CGATTGCCAGGAGCTGACCCCCGACATCGGTCGACAACTGCTTTATCTCA
TCTACGCCTCCGCTGAGGTTTCTCTGGCCTTGGCCGGCGCCGAGGCCAGC
ATGCCGCCTGTAAGGACTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCC
TTGCCGTTTTCCATCCTCTCACGTCCTTCCCTTCCTTCCTTCCCTTCCTC
CCTTCCCTCCTCCTCCTTCCTCATCTTCCGCGTCCCGGTAGGCTGGACTG
CAGAGTTCTCCCTGGAGTGGCTGCGGCTGGTGTCCTTGCCCTTCCCCCAC
ACGCGGCCCCTCCGGAACCCCCTCAACGACAACCTCCCCATCTCCCGCTC
ACGGCCTTCCGCACCTGCGACAAGGTCGTCCTCTTCTTCTCGGTCAACGA
GTCGGGCCACTGGCAGGGTGCCGCCGTCATGTCCTCCCTCATCCGCTCCC
AGCCACACCCGCAACATTTGGCTCCCCTGCAGCTCCTCCAACACCACCAG
GACGATCCGGTTCGTGGACCTGGGCATTCCCTGGCCGGAGCAAGCCCGCG
TCCGTTTCTTCGTCATTAAGAGCCTCAACTACAAAAATTTGGCGCAGAGT
GTACGGAGGGGCGTTTGGCGCACGCACCGCAACAACGAGCGGACATTGAA
CGAGATGGGAGGAGGGGCGGGGGGAGCACTGTTTAGGGGGGCGGGCATGG
GCACGGGGAATGGAGGGATGCCTGGACCGCTTATTCCGGCGCCGCATGAG
CGATTGCCAGGAGCTGACCCCCGACATCGGTCGACAACTGCTTTATCTCA
TCTACGCCTCCGCTGAGGTTTCTCTGGCCTTGGCCGGCGCCGAGGCCAGC
ATGCCGCCTGTAAGGACTCCCTCCATCCCTCCCTCCCTCCCTCCCTCCCC
TTGCCGTTTTCCATCCTCTCACGTCCTTCCCTTCCTTCCTTCCCTTCCTC
CCTTCCCTCCTCCTCCTTCCTCATCTTCCGCGTCCCGGTAGGCTGGACTG
CAGAGTTCTCCCTGGAGTGGCTGCGGCTGGTGTCCTTGCCCTTCCCCCAC
ACGCGGCCCCTCCGGAACCCCCTCAACGACAACCTCCCCATCTCCCGCTC
ACGGCCTTCCGCACCTGCGACAAGGTCGTCCTCTTCTTCTCGGTCAACGA
GTCGGGCCACTGGCAGGGTGCCGCCGTCATGTCCTCCCTCATCCGCTCCC
AGCCACACCCGCAACATTTGGCTCCCCTGCAGCTCCTCCAACACCACCAG
GACGATCCGGTTCGTGGACCTGGGCATTCCCTGGCCGGAGCAAGCCCGCG
TCCGTTTCTTCGTCATTAAGAGCCTCAACTACAAAAATTTGGCGCAGAGT
GTACGGAGGGGCGTTTGGCGCACGCACCGCAACAACGAGCGGACATTGAA
CGAGATGGGAGGAGGGGCGGGGGGAGCACTGTTTAGGGGGGCGGGCATGG
GCACGGGGAATGGAGGGATGCCTGGACCGCTTATTCCGGCGCCGCATGAG
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Synonyms
Publications