jgi.p|Nanoce1779_2|280354, mRNA_9685 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|280354
Unique Name	mRNA_9685
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1852
Alignment location	scaffold_38:106491..108629 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	280440
Track	FilteredModels2
ProteinId	280354

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:106491..108629 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|280354	gene_9685	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|280354	mRNA_9685-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9685	CDS_9685	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:106491..108629+
coding sequence from alignment at scaffold_38:106491..108629+

mRNA sequence

>mRNA_9685 ID=mRNA_9685|Name=jgi.p|Nanoce1779_2|280354|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp
CGGTAGTCAAGGCGAACTCGACGCATTCGTGACTTCAAGCATAATTAAGT
TTTTGTTAATCGCGTCCTGTCCTCATCTCCACTCTCTATGTTCATGGCAC
ATGCTGCAGTCCTAAATCCCCACCTCGTCGCCGTCCCTGTGGCCGTGGCT
CCGCACCAACTCCCTCGAGCCGTAGCCATCCACGAAGCCACCCGCAATCA
GGATTTCGAGGGCCTGGCACTCTTGTTGGAGGAAGATCCGAGCCTCATCC
ATGCAGAAGATGTGGTGGGTCGCTCACCGTTGATGATGAGCAGCTTGCGA
GGCCATGTTGAGGTTTCGGCTTGGCTACTTGACCACGGCGCGCCGCTAGA
CGCGGTGGACGTGAACAAGCGCACGGCCATGTATAATGCGGCCAGCTATG
GATTTGTTGAGGTCGTGAAGCTGCTGATGGAACGGGGAGCAGACCCAAGT
ATTGGCGACTGTGAGGGTAACGTGCCCATCATTGCAGCCGCCTACTACGG
CTACGAGCAATGCGTCCGGTACCTGCTCGACTTCAAAGGTGGACACGATC
CCGATGACCTAGCCCGCAAGGGAGAGCGTCGATGGACGGGCCTGTATCTG
TCCTGTGAAGCAGGCCATTCGAAGATAGCCAAGCTCTTCCTTCGGGTCGG
AGCCGACCCTACCATTGCCGACAGCCAAGGCAACACGGCGCTGGATATAG
CGCGGAAAATGAGCAATTGGCGGTGTGCCCGGCTGTTGGAGCGAGCTCTG
AAGGAACCTCAGCGAGTGGATTATCTGAAGAAGGCTCACCTCCTGGCCGA
GGCGGGGCATGCTTTGAGGCAGGTGGCGGTCGTAGTGGAGGGAGAGAGAG
CAGGGAGCGAGGGAGGGCAGGGAGGAAGGTGGATCAAGACCAGGGGGGGG
CGGAAGAGAAAATATGTGGAGACAGTACCGGAGTGTTTAAAAAAAAGGGT
GAAGGAAGGAGGGTTGTTGCCGATGGTGGGTGTGGGGGAACCGAAATTGC
TGTTGCTAGGGATGGGGGCGGCACTGGCGGCGGAAATGAAGGGGAAGGTT
GGCAGGAGGAGGAAGAGAAGAAGGAGGGGGAGTGATAGCATGACGACGAT
GATGGAGATGGGGAGAGATAGAGGACGGGGAAGCAGGAGGGAAGAGAGTC
CTCGAAAGGGACAGAAGGGAGAAATATACTCGGGCAGGGGAAGAAAGGTG
GTGCGGTATGATGAGCTCGATGAAGAGGAGGAGGGAGAGGAGGAGGAGGA
GGAGGGAGAGAAATGCATGGGCGGTTTATCCTCCCGTCTCTTCTCCCCGT
CCTCCTCGTCTTTTTCGCCGTGTAGCGGCGGCAGAGAGGTACAGGGACAC
ATGACCCCTGGGAAGGTAGTGGGAGCAGAGGGGGGGAAAGAGGAAGACGA
AGATAATGAGGTGGTGGGTGTGATAAATTATCTGATTAATGGGGGCTTGC
CCTCAGAACTGTTTGTGGAAGTGACCGAGTACATGAGGCCACGCTGGATG
GCGTGAGGGAAATAAATGACACGTACACTTTTGTTCGCTCGCCCGCCACA
CACTGGTTGGTGGATGGGAGGGAATAGAAGGGAGGAACGAAGAAAAAGCT
AGCGAGAAACAGAGAGTGACATGCTGGGCGTGTGATTGAATCCCTGTTTA
CAGTATATATGTACAAAGAAGAAAAGACAGGAGTCGCAGCAGGCAAGGCA
GTAGCGCTAGCCCCTGCACGAACCCAAAGAGAAGGGCCAGGAGAAAGTGG
TGTCCGTTTCAGGAGAAAGCGACGAACCGGAAGAGGAGAAGGAGAGAGGA
GAAGCTGGAGCGGGCGAGGATAGAAAACACATTTATGAGGATTTGTGTTT
CT

protein sequence of jgi.p|Nanoce1779_2|280354

>mRNA_9685-protein ID=mRNA_9685-protein|Name=jgi.p|Nanoce1779_2|280354|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MFMAHAAVLNPHLVAVPVAVAPHQLPRAVAIHEATRNQDFEGLALLLEED
PSLIHAEDVVGRSPLMMSSLRGHVEVSAWLLDHGAPLDAVDVNKRTAMYN
AASYGFVEVVKLLMERGADPSIGDCEGNVPIIAAAYYGYEQCVRYLLDFK
GGHDPDDLARKGERRWTGLYLSCEAGHSKIAKLFLRVGADPTIADSQGNT
ALDIARKMSNWRCARLLERALKEPQRVDYLKKAHLLAEAGHALRQVAVVV
EGERAGSEGGQGGRWIKTRGGRKRKYVETVPECLKKRVKEGGLLPMVGVG
EPKLLLLGMGAALAAEMKGKVGRRRKRRRRGSDSMTTMMEMGRDRGRGSR
REESPRKGQKGEIYSGRGRKVVRYDELDEEEEGEEEEEEGEKCMGGLSSR
LFSPSSSSFSPCSGGREVQGHMTPGKVVGAEGGKEEDEDNEVVGVINYLI
NGGLPSELFVEVTEYMRPRWMA*

mRNA from alignment at scaffold_38:106491..108629+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9685 ID=mRNA_9685|Name=jgi.p|Nanoce1779_2|280354|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp|location=Sequence derived from alignment at scaffold_38:106491..108629+ (Nannochloropsis oceanica)
CGGTAGTCAAGGCGAACTCGACGCATTCGTGACTTCAAGCATAATTAAGT
TTTTGTTAATCGCGTCCTGTCCTCATCTCCACTCTCTATGTTCATGGCAC
ATGCTGCAGTCCTAAATCCCCACCTCGTCGCCGTCCCTGTGGCCGTGGCT
CCGCACCAACTCCCTCGAGCCGTAGCCATCCACGAAGCCACCCGCAATCA
GGATTTCGAGGGCCTGGCACTCTTGTTGGAGGAAGATCCGAGCCTCATCC
ATGCAGAAGATGTGGTGGGTCGCTCACCGTTGATGATGAGCAGCTTGCGA
GGCCATGTTGAGGTTTCGGCTTGGCTACTTGACCACGGCGCGCCGCTAGA
CGCGGTGGACGTGAACAAGCGCACGGCCATGTATAATGCGGCCAGCTATG
GATTTGTTGAGGTCGTGAAGCTGCTGATGGAACGGGGAGCAGACCCAAGT
ATTGGCGACTGTGAGGGTAACGTGCCCATCATTGCAGGTAGGAGTTTGGG
AATGGAGAGGGGGAGCGTGAAGTGGGAAAAGGAAGTATGGTATAGAGGAA
AGGTTGTGGCTATGTGGCTTGATTTGCTCCTTTTTAAATGCATGTCCAGG
CGGTTCTGTCTCTTTGCTCTTCAAATATATCTCCTTGTGACACATCCGGC
TTACTAACCACTCCCCTCCCTCACCCTTCCATCCTTTCCCCTCCTCACCC
TCCCTCATTCCAAGCCGCCTACTACGGCTACGAGCAATGCGTCCGGTACC
TGCTCGACTTCAAAGGTGGACACGATCCCGATGACCTAGCCCGCAAGGGA
GAGCGTCGATGGACGGGCCTGTATCTGTCCTGTGAAGCAGGCCATTCGAA
GATAGCCAAGCTCTTCCTTCGGGTCGGAGCCGACCCTACCATTGCCGACA
GCCAAGGCAACACGGCGCTGGATATAGCGCGGAAAATGAGCAATTGGCGG
TGTGCCCGGCTGTTGGAGCGAGCTCTGAAGGAACCTCAGCGAGTGGATTA
TCTGAAGAAGGCTCACCTCCTGGCCGAGGCGGGGCATGCTTTGAGGCAGG
TGGCGGTCGTAGTGGAGGGAGAGAGAGCAGGGAGCGAGGGAGGGCAGGGA
GGAAGGTGGATCAAGACCAGGGGGGGGCGGAAGAGAAAATATGTGGAGAC
AGTACCGGAGTGTTTAAAAAAAAGGGTGAAGGAAGGAGGGTTGTTGCCGA
TGGTGGGTGTGGGGGAACCGAAATTGCTGTTGCTAGGGATGGGGGCGGCA
CTGGCGGCGGAAATGAAGGGGAAGGTTGGCAGGAGGAGGAAGAGAAGAAG
GAGGGGGAGTGATAGCATGACGACGATGATGGAGATGGGGAGAGATAGAG
GACGGGGAAGCAGGAGGGAAGAGAGTCCTCGAAAGGGACAGAAGGGAGAA
ATATACTCGGGCAGGGTTGCTAGCAGCGGTGGTCCCGCTAGTGCGGAACA
ACAAGAAGGGCATGGAGGAGGTAAGGGAAGAAAGGTGGTGCGGTATGATG
AGCTCGATGAAGAGGAGGAGGGAGAGGAGGAGGAGGAGGAGGGAGAGAAA
TGCATGGGCGGTTTATCCTCCCGTCTCTTCTCCCCGTCCTCCTCGTCTTT
TTCGCCGTGTAGCGGCGGCAGAGAGGTACAGGGACACATGACCCCTGGGA
AGGTAGTGGGAGCAGAGGGGGGGAAAGAGGAAGACGAAGATAATGAGGTG
GTGGGTGTGATAAATTATCTGATTAATGGGGGCTTGCCCTCAGAACTGTT
TGTGGAAGTGACCGAGTACATGAGGCCACGCTGGATGGCGTGAGGGAAAT
AAATGACACGTACACTTTTGTTCGCTCGCCCGCCACACACTGGTTGGTGG
ATGGGAGGGAATAGAAGGGAGGAACGAAGAAAAAGCTAGCGAGAAACAGA
GAGTGACATGCTGGGCGTGTGATTGAATCCCTGTTTACAGTATATATGTA
CAAAGAAGAAAAGACAGGAGTCGCAGCAGGCAAGGCAGTAGCGCTAGCCC
CTGCACGAACCCAAAGAGAAGGGCCAGGAGAAAGTGGTGTCCGTTTCAGG
AGAAAGCGACGAACCGGAAGAGGAGAAGGAGAGAGGAGAAGCTGGAGCGG
GCGAGGATAGAAAACACATTTATGAGGATTTGTGTTTCT

Coding sequence (CDS) from alignment at scaffold_38:106491..108629+

>mRNA_9685 ID=mRNA_9685|Name=jgi.p|Nanoce1779_2|280354|organism=Nannochloropsis oceanica|type=CDS|length=4257bp|location=Sequence derived from alignment at scaffold_38:106491..108629+ (Nannochloropsis oceanica)
ATGTTCATGGCACATGCTGCAGTCCTAAATCCCCACCTCGTCGCCGTCCC
TGTGGCCGTGGCTCCGCACCAACTCCCTCGAGCCGTAGCCATCCACGAAG
CCACCCGCAATCAGGATTTCGAGGGCCTGGCACTCTTGTTGGAGGAAGAT
CCGAGCCTCATCCATGCAGAAGATGTGGTGGGTCGCTCACCGTTGATGAT
GAGCAGCTTGCGAGGCCATGTTGAGGTTTCGGCTTGGCTACTTGACCACG
GCGCGCCGCTAGACGCGGTGGACGTGAACAAGCGCACGGCCATGTATAAT
GCGGCCAGCTATGGATTTGTTGAGGTCGTGAAGCTGCTGATGGAACGGGG
AGCAGACCCAAGTATTGGCGACTGTGAGGGTAACGTGCCCATCATTGCAG
CCGCCTACTACGGCTACGAGCAATGCGTCCGGTACCTGCTCGACTTCAAA
GGTGGACACGATCCCGATGACCTAGCCCGCAAGGGAGAGCGTCGATGGAC
GGGCCTGTATCTGTCCTGTGAAGCAGGCCATTCGAAGATAGCCAAGCTCT
TCCTTCGGGTCGGAGCCGACCCTACCATTGCCGACAGCCAAGGCAACACG
GCGCTGGATATAGCGCGGAAAATGAGCAATTGGCGGTGTGCCCGGCTGTT
GGAGCGAGCTCTGAAGGAACCTCAGCGAGTGGATTATCTGAAGAAGGCTC
ACCTCCTGGCCGAGGCGGGGCATGCTTTGAGGCAGGTGGCGGTCGTAGTG
GAGGGAGAGAGAGCAGGGAGCGAGGGAGGGCAGGGAGGAAGGTGGATCAA
GACCAGGGGGGGGCGGAAGAGAAAATATGTGGAGACAGTACCGGAGTGTT
TAAAAAAAAGGGTGAAGGAAGGAGGGTTGTTGCCGATGGTGGGTGTGGGG
GAACCGAAATTGCTGTTGCTAGGGATGGGGGCGGCACTGGCGGCGGAAAT
GAAGGGGAAGGTTGGCAGGAGGAGGAAGAGAAGAAGGAGGGGGAGTGATA
GCATGACGACGATGATGGAGATGGGGAGAGATAGAGGACGGGGAAGCAGG
AGGGAAGAGAGTCCTCGAAAGGGACAGAAGGGAGAAATATACTCGGGCAG
GGGAAGAAAGGTGGTGCGGTATGATGAGCTCGATGAAGAGGAGGAGGGAG
AGGAGGAGGAGGAGGAGGGAGAGAAATGCATGGGCGGTTTATCCTCCCGT
CTCTTCTCCCCGTCCTCCTCGTCTTTTTCGCCGTGTAGCGGCGGCAGAGA
GGTACAGGGACACATGACCCCTGGGAAGGTAGTGGGAGCAGAGGGGGGGA
AAGAGGAAGACGAAGATAATGAGGTGGTGGGTGTGATAAATTATCTGATT
AATGGGGGCTTGCCCTCAGAACTGTTTGTGGAAGTGACCGAGTACATGAG
GCCACGCTGGATGGCGTGAATGTTCATGGCACATGCTGCAGTCCTAAATC
CCCACCTCGTCGCCGTCCCTGTGGCCGTGGCTCCGCACCAACTCCCTCGA
GCCGTAGCCATCCACGAAGCCACCCGCAATCAGGATTTCGAGGGCCTGGC
ACTCTTGTTGGAGGAAGATCCGAGCCTCATCCATGCAGAAGATGTGGTGG
GTCGCTCACCGTTGATGATGAGCAGCTTGCGAGGCCATGTTGAGGTTTCG
GCTTGGCTACTTGACCACGGCGCGCCGCTAGACGCGGTGGACGTGAACAA
GCGCACGGCCATGTATAATGCGGCCAGCTATGGATTTGTTGAGGTCGTGA
AGCTGCTGATGGAACGGGGAGCAGACCCAAGTATTGGCGACTGTGAGGGT
AACGTGCCCATCATTGCAGCCGCCTACTACGGCTACGAGCAATGCGTCCG
GTACCTGCTCGACTTCAAAGGTGGACACGATCCCGATGACCTAGCCCGCA
AGGGAGAGCGTCGATGGACGGGCCTGTATCTGTCCTGTGAAGCAGGCCAT
TCGAAGATAGCCAAGCTCTTCCTTCGGGTCGGAGCCGACCCTACCATTGC
CGACAGCCAAGGCAACACGGCGCTGGATATAGCGCGGAAAATGAGCAATT
GGCGGTGTGCCCGGCTGTTGGAGCGAGCTCTGAAGGAACCTCAGCGAGTG
GATTATCTGAAGAAGGCTCACCTCCTGGCCGAGGCGGGGCATGCTTTGAG
GCAGGTGGCGGTCGTAGTGGAGGGAGAGAGAGCAGGGAGCGAGGGAGGGC
AGGGAGGAAGGTGGATCAAGACCAGGGGGGGGCGGAAGAGAAAATATGTG
GAGACAGTACCGGAGTGTTTAAAAAAAAGGGTGAAGGAAGGAGGGTTGTT
GCCGATGGTGGGTGTGGGGGAACCGAAATTGCTGTTGCTAGGGATGGGGG
CGGCACTGGCGGCGGAAATGAAGGGGAAGGTTGGCAGGAGGAGGAAGAGA
AGAAGGAGGGGGAGTGATAGCATGACGACGATGATGGAGATGGGGAGAGA
TAGAGGACGGGGAAGCAGGAGGGAAGAGAGTCCTCGAAAGGGACAGAAGG
GAGAAATATACTCGGGCAGGGGAAGAAAGGTGGTGCGGTATGATGAGCTC
GATGAAGAGGAGGAGGGAGAGGAGGAGGAGGAGGAGGGAGAGAAATGCAT
GGGCGGTTTATCCTCCCGTCTCTTCTCCCCGTCCTCCTCGTCTTTTTCGC
CGTGTAGCGGCGGCAGAGAGGTACAGGGACACATGACCCCTGGGAAGGTA
GTGGGAGCAGAGGGGGGGAAAGAGGAAGACGAAGATAATGAGGTGGTGGG
TGTGATAAATTATCTGATTAATGGGGGCTTGCCCTCAGAACTGTTTGTGG
AAGTGACCGAGTACATGAGGCCACGCTGGATGGCGTGAATGTTCATGGCA
CATGCTGCAGTCCTAAATCCCCACCTCGTCGCCGTCCCTGTGGCCGTGGC
TCCGCACCAACTCCCTCGAGCCGTAGCCATCCACGAAGCCACCCGCAATC
AGGATTTCGAGGGCCTGGCACTCTTGTTGGAGGAAGATCCGAGCCTCATC
CATGCAGAAGATGTGGTGGGTCGCTCACCGTTGATGATGAGCAGCTTGCG
AGGCCATGTTGAGGTTTCGGCTTGGCTACTTGACCACGGCGCGCCGCTAG
ACGCGGTGGACGTGAACAAGCGCACGGCCATGTATAATGCGGCCAGCTAT
GGATTTGTTGAGGTCGTGAAGCTGCTGATGGAACGGGGAGCAGACCCAAG
TATTGGCGACTGTGAGGGTAACGTGCCCATCATTGCAGCCGCCTACTACG
GCTACGAGCAATGCGTCCGGTACCTGCTCGACTTCAAAGGTGGACACGAT
CCCGATGACCTAGCCCGCAAGGGAGAGCGTCGATGGACGGGCCTGTATCT
GTCCTGTGAAGCAGGCCATTCGAAGATAGCCAAGCTCTTCCTTCGGGTCG
GAGCCGACCCTACCATTGCCGACAGCCAAGGCAACACGGCGCTGGATATA
GCGCGGAAAATGAGCAATTGGCGGTGTGCCCGGCTGTTGGAGCGAGCTCT
GAAGGAACCTCAGCGAGTGGATTATCTGAAGAAGGCTCACCTCCTGGCCG
AGGCGGGGCATGCTTTGAGGCAGGTGGCGGTCGTAGTGGAGGGAGAGAGA
GCAGGGAGCGAGGGAGGGCAGGGAGGAAGGTGGATCAAGACCAGGGGGGG
GCGGAAGAGAAAATATGTGGAGACAGTACCGGAGTGTTTAAAAAAAAGGG
TGAAGGAAGGAGGGTTGTTGCCGATGGTGGGTGTGGGGGAACCGAAATTG
CTGTTGCTAGGGATGGGGGCGGCACTGGCGGCGGAAATGAAGGGGAAGGT
TGGCAGGAGGAGGAAGAGAAGAAGGAGGGGGAGTGATAGCATGACGACGA
TGATGGAGATGGGGAGAGATAGAGGACGGGGAAGCAGGAGGGAAGAGAGT
CCTCGAAAGGGACAGAAGGGAGAAATATACTCGGGCAGGGGAAGAAAGGT
GGTGCGGTATGATGAGCTCGATGAAGAGGAGGAGGGAGAGGAGGAGGAGG
AGGAGGGAGAGAAATGCATGGGCGGTTTATCCTCCCGTCTCTTCTCCCCG
TCCTCCTCGTCTTTTTCGCCGTGTAGCGGCGGCAGAGAGGTACAGGGACA
CATGACCCCTGGGAAGGTAGTGGGAGCAGAGGGGGGGAAAGAGGAAGACG
AAGATAATGAGGTGGTGGGTGTGATAAATTATCTGATTAATGGGGGCTTG
CCCTCAGAACTGTTTGTGGAAGTGACCGAGTACATGAGGCCACGCTGGAT
GGCGTGA

Synonyms

Publications