jgi.p|Nanoce1779_2|642680, mRNA_9684 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|642680
Unique Name	mRNA_9684
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1368
Alignment location	scaffold_38:103877..105601 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	642766
Track	FilteredModels2
ProteinId	642680

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:103877..105601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642680	gene_9684	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642680	mRNA_9684-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9684	CDS_9684	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:103877..105601+
coding sequence from alignment at scaffold_38:103877..105601+

mRNA sequence

>mRNA_9684 ID=mRNA_9684|Name=jgi.p|Nanoce1779_2|642680|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
ATGGAACTTGTGATTGAAGCAAGTGTTGGTCTAGCTGGTGCGGTATCCTC
CATTGCGCTTTACCGTGGGATCAAGCGTCGTTTGTACCCGGACAACGAGC
TGTACGCCGTGGACGGCACCATGGCCGGACGCACGGTTCTAGTGACGGGC
GCCAACAGTGGGGTGGGCTTGGCGGCCGCGGAGCTTCTGGCGCGCAAGGG
TGCCCATGTAGTTTGTGCATGCCGGGATATGGCCAAGGCGGAAGCCACCG
CCGCAGCGATAAACAAACGTCTCCCTCGTTCTTCCCCGTCTCTCCCTCCC
TCCGGCCGTGCCTTCCCTGCACCCGCCCCACTGGACCTCGCCTCCCTGCC
CAGTGTGCGCGCGTTTGCGGATTCGTTTTTAAGGGAAATGGAAAAAGGAG
GAGCAGGAAGAGGAGTAGGAGGAATGGGGGGGGGAGGGTCGCTGCACGTG
CTCGTAAACAATGCCGGGGTCCTTCTCCCTAAGCGAGAGGTAGTGGATGT
GTGGGCCGGCGCGGAAGGAAAGGGAAGGAAGGAAGGGAAGCAGATGTTGG
TGGAAAAAAGCATGGCAACGAATCACCTGGGACCGTTCCTCTTGACCTCT
CTCTTGATGCCCGCGCTCAAGGCGACGGGTCGGGGCGAGGGGAGCCCGGC
ACGGGTGATCATGGTCTCTTCCAGGCTGGAGCGAGGGAAGGCCGGGTATC
TCAACGCTTGGATGCGCGATCCTACGCTCGCGCCTTCCGAGGAGAAGGAA
AAAAAAAAAAAAAAGAGCGAGGAGGGGGGGAGGGAGGGAGGGAGGGAGGG
GGCGCACACTGGATGCCCGCCTTACAAGCCGTTTTTGGCCTACGGGGCCA
GTAAGCTGGCCAACATGTTGATGGTCACCCACCTTAACCGGCAACGGCAG
GGCTGGGCCCTCCCCGACCACGCCCACCATCCACCCTCCTCCTTCACCCC
CTCCTCCCTCCTGCCCTCCTCCACCTCCCCCCAAGGCCAGCGGTGGGATC
CGTCCGATGACCATCTTTGCGTATATGGCTGCTCGCCGGGCATGGTCCAC
ACGTCCCTCAATCGCGCCCTCGCCCCTGCCCTCCTTCGGTTCATCTTCTG
GCCTCTGAGCTACTCCTTGCTGCAGTCACCCTACGAGGGGGCGCGCCCTG
TTGTGTTCCTGGCCAGTAGCGAGCGGGTGGAAGGGAGGGGAGGGGGGTTC
TGGGTGATAGGCAGGAAAGAAGGAGAGAGGAAGGGAGAGAAAGAGGTGGT
AGAGGTGGCGTCGAGCCCGGAGGCGGAGGACACGGTGTTGGCGCACCGGC
TGTGGTCTCGGTGTGAGGAGATGGTAGCCCCATTTCTGGAGGAGAGGACG
GCGAGGGGGAAACAGTAA

protein sequence of jgi.p|Nanoce1779_2|642680

>mRNA_9684-protein ID=mRNA_9684-protein|Name=jgi.p|Nanoce1779_2|642680|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MELVIEASVGLAGAVSSIALYRGIKRRLYPDNELYAVDGTMAGRTVLVTG
ANSGVGLAAAELLARKGAHVVCACRDMAKAEATAAAINKRLPRSSPSLPP
SGRAFPAPAPLDLASLPSVRAFADSFLREMEKGGAGRGVGGMGGGGSLHV
LVNNAGVLLPKREVVDVWAGAEGKGRKEGKQMLVEKSMATNHLGPFLLTS
LLMPALKATGRGEGSPARVIMVSSRLERGKAGYLNAWMRDPTLAPSEEKE
KKKKKSEEGGREGGREGAHTGCPPYKPFLAYGASKLANMLMVTHLNRQRQ
GWALPDHAHHPPSSFTPSSLLPSSTSPQGQRWDPSDDHLCVYGCSPGMVH
TSLNRALAPALLRFIFWPLSYSLLQSPYEGARPVVFLASSERVEGRGGGF
WVIGRKEGERKGEKEVVEVASSPEAEDTVLAHRLWSRCEEMVAPFLEERT
ARGKQ*

mRNA from alignment at scaffold_38:103877..105601+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9684 ID=mRNA_9684|Name=jgi.p|Nanoce1779_2|642680|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at scaffold_38:103877..105601+ (Nannochloropsis oceanica)
ATGGAACTTGTGATTGAAGCAAGTGTTGGTCTAGCTGGTGCGGTATCCTC
CATTGCGCTTTACCGTGGGATCAAGCGTCGTTTGTACCCGGACAACGAGC
TGTACGCCGTGGACGGCACCATGGCCGGACGCACGGTTCTAGTGACGGGC
GCCAACAGTGGGGTGGGCTTGGCGGCCGCGGAGCTTCTGGCGCGCAAGGT
GAGTGAGCGAGTAGCTGAAAGGGTTGTAGGCGAGAGCAGGGAAATATCGG
GAGACAGGGTTGGCAAGGAATCGACGCGCTAAGCGCTGGCTACGCACTAG
GAGGGCGCACGTGCTTCGATACCGCATAAATATCTCTTCCGCTCAGTGTC
CCTCCCTTCTCTTTTGCCACCCTCGCTTGCTTGCTCACACTGTACAGGGT
GCCCATGTAGTTTGTGCATGCCGGGATATGGCCAAGGCGGAAGCCACCGC
CGCAGCGATAAACAAACGTCTCCCTCGTTCTTCCCCGTCTCTCCCTCCCT
CCGGCCGTGCCTTCCCTGCACCCGCCCCACTGGACCTCGCCTCCCTGCCC
AGTGTGCGCGCGTTTGCGGATTCGTTTTTAAGGGAAATGGAAAAAGGAGG
AGCAGGAAGAGGAGTAGGAGGAATGGGGGGGGGAGGGTCGCTGCACGTGC
TCGTAAACAATGCCGGGGTCCTTCTCCCTAAGCGAGAGGTAGTGGATGTG
TGGGCCGGCGCGGAAGGAAAGGGAAGGAAGGAAGGGAAGCAGATGTTGGT
GGAAAAAAGCATGGCAACGAATCACCTGGGACCGTTCCTCTTGACCTCTC
TCTTGATGCCCGCGCTCAAGGCGACGGGTCGGGGCGAGGGGAGCCCGGCA
CGGGTGATCATGGTCTCTTCCAGGCTGGAGCGAGGGAAGGCCGGGTATCT
CAACGCTTGGATGCGCGATCCTACGCTCGCGCCTTCCGAGGAGAAGGAAA
AAAAAAAAAAAAAGAGCGAGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGG
GCGCACACTGGATGCCCGCCTTACAAGCCGTTTTTGGCCTACGGGGCCAG
TAAGCTGGCCAACATGTTGATGGTAAGTCCTAAGTCATCCCGCACTCTTT
CCTCCCTTCACTCGTTTCGTGACACCTCCTGTCTTCCTATTGTGCAGCTA
ACTCTCACGCCACAGTCTCATCCCCTCCTCCATCCCTCCTTTTTCGCATC
CCCTCTCTCCCTCACTCCCACCATTACCAGGTCACCCACCTTAACCGGCA
ACGGCAGGGCTGGGCCCTCCCCGACCACGCCCACCATCCACCCTCCTCCT
TCACCCCCTCCTCCCTCCTGCCCTCCTCCACCTCCCCCCAAGGCCAGCGG
TGGGATCCGTCCGATGACCATCTTTGCGTATATGGCTGCTCGCCGGGCAT
GGTCCACACGTCCCTCAATCGCGCCCTCGCCCCTGCCCTCCTTCGGTTCA
TCTTCTGGCCTCTGAGCTACTCCTTGCTGCAGTCACCCTACGAGGGGGCG
CGCCCTGTTGTGTTCCTGGCCAGTAGCGAGCGGGTGGAAGGGAGGGGAGG
GGGGTTCTGGGTGATAGGCAGGAAAGAAGGAGAGAGGAAGGGAGAGAAAG
AGGTGGTAGAGGTGGCGTCGAGCCCGGAGGCGGAGGACACGGTGTTGGCG
CACCGGCTGTGGTCTCGGTGTGAGGAGATGGTAGCCCCATTTCTGGAGGA
GAGGACGGCGAGGGGGAAACAGTAA

Coding sequence (CDS) from alignment at scaffold_38:103877..105601+

>mRNA_9684 ID=mRNA_9684|Name=jgi.p|Nanoce1779_2|642680|organism=Nannochloropsis oceanica|type=CDS|length=4104bp|location=Sequence derived from alignment at scaffold_38:103877..105601+ (Nannochloropsis oceanica)
ATGGAACTTGTGATTGAAGCAAGTGTTGGTCTAGCTGGTGCGGTATCCTC
CATTGCGCTTTACCGTGGGATCAAGCGTCGTTTGTACCCGGACAACGAGC
TGTACGCCGTGGACGGCACCATGGCCGGACGCACGGTTCTAGTGACGGGC
GCCAACAGTGGGGTGGGCTTGGCGGCCGCGGAGCTTCTGGCGCGCAAGGG
TGCCCATGTAGTTTGTGCATGCCGGGATATGGCCAAGGCGGAAGCCACCG
CCGCAGCGATAAACAAACGTCTCCCTCGTTCTTCCCCGTCTCTCCCTCCC
TCCGGCCGTGCCTTCCCTGCACCCGCCCCACTGGACCTCGCCTCCCTGCC
CAGTGTGCGCGCGTTTGCGGATTCGTTTTTAAGGGAAATGGAAAAAGGAG
GAGCAGGAAGAGGAGTAGGAGGAATGGGGGGGGGAGGGTCGCTGCACGTG
CTCGTAAACAATGCCGGGGTCCTTCTCCCTAAGCGAGAGGTAGTGGATGT
GTGGGCCGGCGCGGAAGGAAAGGGAAGGAAGGAAGGGAAGCAGATGTTGG
TGGAAAAAAGCATGGCAACGAATCACCTGGGACCGTTCCTCTTGACCTCT
CTCTTGATGCCCGCGCTCAAGGCGACGGGTCGGGGCGAGGGGAGCCCGGC
ACGGGTGATCATGGTCTCTTCCAGGCTGGAGCGAGGGAAGGCCGGGTATC
TCAACGCTTGGATGCGCGATCCTACGCTCGCGCCTTCCGAGGAGAAGGAA
AAAAAAAAAAAAAAGAGCGAGGAGGGGGGGAGGGAGGGAGGGAGGGAGGG
GGCGCACACTGGATGCCCGCCTTACAAGCCGTTTTTGGCCTACGGGGCCA
GTAAGCTGGCCAACATGTTGATGGTCACCCACCTTAACCGGCAACGGCAG
GGCTGGGCCCTCCCCGACCACGCCCACCATCCACCCTCCTCCTTCACCCC
CTCCTCCCTCCTGCCCTCCTCCACCTCCCCCCAAGGCCAGCGGTGGGATC
CGTCCGATGACCATCTTTGCGTATATGGCTGCTCGCCGGGCATGGTCCAC
ACGTCCCTCAATCGCGCCCTCGCCCCTGCCCTCCTTCGGTTCATCTTCTG
GCCTCTGAGCTACTCCTTGCTGCAGTCACCCTACGAGGGGGCGCGCCCTG
TTGTGTTCCTGGCCAGTAGCGAGCGGGTGGAAGGGAGGGGAGGGGGGTTC
TGGGTGATAGGCAGGAAAGAAGGAGAGAGGAAGGGAGAGAAAGAGGTGGT
AGAGGTGGCGTCGAGCCCGGAGGCGGAGGACACGGTGTTGGCGCACCGGC
TGTGGTCTCGGTGTGAGGAGATGGTAGCCCCATTTCTGGAGGAGAGGACG
GCGAGGGGGAAACAGTAAATGGAACTTGTGATTGAAGCAAGTGTTGGTCT
AGCTGGTGCGGTATCCTCCATTGCGCTTTACCGTGGGATCAAGCGTCGTT
TGTACCCGGACAACGAGCTGTACGCCGTGGACGGCACCATGGCCGGACGC
ACGGTTCTAGTGACGGGCGCCAACAGTGGGGTGGGCTTGGCGGCCGCGGA
GCTTCTGGCGCGCAAGGGTGCCCATGTAGTTTGTGCATGCCGGGATATGG
CCAAGGCGGAAGCCACCGCCGCAGCGATAAACAAACGTCTCCCTCGTTCT
TCCCCGTCTCTCCCTCCCTCCGGCCGTGCCTTCCCTGCACCCGCCCCACT
GGACCTCGCCTCCCTGCCCAGTGTGCGCGCGTTTGCGGATTCGTTTTTAA
GGGAAATGGAAAAAGGAGGAGCAGGAAGAGGAGTAGGAGGAATGGGGGGG
GGAGGGTCGCTGCACGTGCTCGTAAACAATGCCGGGGTCCTTCTCCCTAA
GCGAGAGGTAGTGGATGTGTGGGCCGGCGCGGAAGGAAAGGGAAGGAAGG
AAGGGAAGCAGATGTTGGTGGAAAAAAGCATGGCAACGAATCACCTGGGA
CCGTTCCTCTTGACCTCTCTCTTGATGCCCGCGCTCAAGGCGACGGGTCG
GGGCGAGGGGAGCCCGGCACGGGTGATCATGGTCTCTTCCAGGCTGGAGC
GAGGGAAGGCCGGGTATCTCAACGCTTGGATGCGCGATCCTACGCTCGCG
CCTTCCGAGGAGAAGGAAAAAAAAAAAAAAAAGAGCGAGGAGGGGGGGAG
GGAGGGAGGGAGGGAGGGGGCGCACACTGGATGCCCGCCTTACAAGCCGT
TTTTGGCCTACGGGGCCAGTAAGCTGGCCAACATGTTGATGGTCACCCAC
CTTAACCGGCAACGGCAGGGCTGGGCCCTCCCCGACCACGCCCACCATCC
ACCCTCCTCCTTCACCCCCTCCTCCCTCCTGCCCTCCTCCACCTCCCCCC
AAGGCCAGCGGTGGGATCCGTCCGATGACCATCTTTGCGTATATGGCTGC
TCGCCGGGCATGGTCCACACGTCCCTCAATCGCGCCCTCGCCCCTGCCCT
CCTTCGGTTCATCTTCTGGCCTCTGAGCTACTCCTTGCTGCAGTCACCCT
ACGAGGGGGCGCGCCCTGTTGTGTTCCTGGCCAGTAGCGAGCGGGTGGAA
GGGAGGGGAGGGGGGTTCTGGGTGATAGGCAGGAAAGAAGGAGAGAGGAA
GGGAGAGAAAGAGGTGGTAGAGGTGGCGTCGAGCCCGGAGGCGGAGGACA
CGGTGTTGGCGCACCGGCTGTGGTCTCGGTGTGAGGAGATGGTAGCCCCA
TTTCTGGAGGAGAGGACGGCGAGGGGGAAACAGTAAATGGAACTTGTGAT
TGAAGCAAGTGTTGGTCTAGCTGGTGCGGTATCCTCCATTGCGCTTTACC
GTGGGATCAAGCGTCGTTTGTACCCGGACAACGAGCTGTACGCCGTGGAC
GGCACCATGGCCGGACGCACGGTTCTAGTGACGGGCGCCAACAGTGGGGT
GGGCTTGGCGGCCGCGGAGCTTCTGGCGCGCAAGGGTGCCCATGTAGTTT
GTGCATGCCGGGATATGGCCAAGGCGGAAGCCACCGCCGCAGCGATAAAC
AAACGTCTCCCTCGTTCTTCCCCGTCTCTCCCTCCCTCCGGCCGTGCCTT
CCCTGCACCCGCCCCACTGGACCTCGCCTCCCTGCCCAGTGTGCGCGCGT
TTGCGGATTCGTTTTTAAGGGAAATGGAAAAAGGAGGAGCAGGAAGAGGA
GTAGGAGGAATGGGGGGGGGAGGGTCGCTGCACGTGCTCGTAAACAATGC
CGGGGTCCTTCTCCCTAAGCGAGAGGTAGTGGATGTGTGGGCCGGCGCGG
AAGGAAAGGGAAGGAAGGAAGGGAAGCAGATGTTGGTGGAAAAAAGCATG
GCAACGAATCACCTGGGACCGTTCCTCTTGACCTCTCTCTTGATGCCCGC
GCTCAAGGCGACGGGTCGGGGCGAGGGGAGCCCGGCACGGGTGATCATGG
TCTCTTCCAGGCTGGAGCGAGGGAAGGCCGGGTATCTCAACGCTTGGATG
CGCGATCCTACGCTCGCGCCTTCCGAGGAGAAGGAAAAAAAAAAAAAAAA
GAGCGAGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGGGCGCACACTGGAT
GCCCGCCTTACAAGCCGTTTTTGGCCTACGGGGCCAGTAAGCTGGCCAAC
ATGTTGATGGTCACCCACCTTAACCGGCAACGGCAGGGCTGGGCCCTCCC
CGACCACGCCCACCATCCACCCTCCTCCTTCACCCCCTCCTCCCTCCTGC
CCTCCTCCACCTCCCCCCAAGGCCAGCGGTGGGATCCGTCCGATGACCAT
CTTTGCGTATATGGCTGCTCGCCGGGCATGGTCCACACGTCCCTCAATCG
CGCCCTCGCCCCTGCCCTCCTTCGGTTCATCTTCTGGCCTCTGAGCTACT
CCTTGCTGCAGTCACCCTACGAGGGGGCGCGCCCTGTTGTGTTCCTGGCC
AGTAGCGAGCGGGTGGAAGGGAGGGGAGGGGGGTTCTGGGTGATAGGCAG
GAAAGAAGGAGAGAGGAAGGGAGAGAAAGAGGTGGTAGAGGTGGCGTCGA
GCCCGGAGGCGGAGGACACGGTGTTGGCGCACCGGCTGTGGTCTCGGTGT
GAGGAGATGGTAGCCCCATTTCTGGAGGAGAGGACGGCGAGGGGGAAACA
GTAA

Synonyms

Publications