jgi.p|Nanoce1779_2|280238, mRNA_9683 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|280238
Unique NamemRNA_9683
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length553
Alignment locationscaffold_38:101463..102690 -

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Properties
Property NameValue
TranscriptId280324
TrackFilteredModels2
ProteinId280238
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:101463..102690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280238gene_9683Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280238mRNA_9683-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9683CDS_9683Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9683 ID=mRNA_9683|Name=jgi.p|Nanoce1779_2|280238|organism=Nannochloropsis oceanica|type=mRNA|length=553bp
TCTGCCTCGTGCCTTCCCCTCTCCCACACGCAGCCACTGATGCCGCTCCT
CTCACGGTCATGCATCTGCAACTCGACATGGGATGGGGGGCTGATGAGGA
GGGCGGGGACTTCTACAACCCGGACGGGATCAAGGAAGGCGAGACAGTGG
AGATAGTTGTCGACAGCATTTTCTACTCCATTCCCAAGGCACCCAAGGAA
GGTGTAAATCCCAAAGGCTTCAAGGGGACGGTGGCCTCCTTGAAATTCAC
GGCCAAGAACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTGTCAAGT
TCACGGAGCCCTACAAATTTCAGGGCCACTTCGAATTTAGGGAGGTCAAA
CGGGTCTGAGGCTTCGGGAGTTAAGAGGGGGAGAGAACCAGAGATGGGGA
TAGGGCAGTCATAGAAAGATAGATTTAAAGAATGGGGCTGATCAGAATAT
GTGGAAGGAGATGAGGAAGAGAAGTATGAAGGAGAACCAAAGTGTGTTTG
ATAAATTATAACGATTTGAGCGCTTGTGTGCGTGTCCGTCTATTTATGTA
TTT
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protein sequence of jgi.p|Nanoce1779_2|280238

>mRNA_9683-protein ID=mRNA_9683-protein|Name=jgi.p|Nanoce1779_2|280238|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MHLQLDMGWGADEEGGDFYNPDGIKEGETVEIVVDSIFYSIPKAPKEGVN
PKGFKGTVASLKFTAKNGVVCSANRPVVVKFTEPYKFQGHFEFREVKRV*
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mRNA from alignment at scaffold_38:101463..102690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9683 ID=mRNA_9683|Name=jgi.p|Nanoce1779_2|280238|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp|location=Sequence derived from alignment at scaffold_38:101463..102690- (Nannochloropsis oceanica)
TCTGCCTCGTGCCTTCCCCTCTCCCACACGCAGCCACTGATGCCGCTCCT
CTCACGGTCATGCATCTGCAACTCGACATGGGATGGGGGGCTGATGAGGA
GGGCGGGGACTTCTACAACCCGGACGGGATCAAGGAAGGTAGGTCAAGGA
TGAGGGAGGGGAGGGACGAGAGGGAGGGTGCGCGATCTGGAAGGAGTGAT
CGCGGTGGCAATGCTGGACATCACGAAACAGTCGACGACCTTGCGTCTAA
AAAAAACAATAGATTAAAGATGCTGTGGGAGTGTCGGGGAACTTTTCCGT
GATTGCCCAAACACCAATCTCATCCCTTTTTCTCGTATTTCCTCCCTCCC
TCTTTCAGGCGAGACAGTGGAGATAGTTGTCGACAGCATTTTCTACTCCA
TTCCCAAGGCACCCAAGGAAGGTGTAAATCCCAAAGGTACGTGCCTACTA
GCTACTTTGCCATCCCTCTTCTCCTCGTTCTGTGAAAGGCGCACACGTGT
GGCCCTCTGCCACTCTCTTCCCTCCCTTCTCCCCTCCCACCTCTTTTCCC
CAACCCCACCTTGACCTTTATTCTTACACCCTCTTATCATCGAATCCACC
TTACCTTCCATTCCCCTCCCAGGCTTCAAGGGGACGGTGGCCTCCTTGAA
ATTCACGGCCAAGAACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTG
TCAAGGTAAGGAGGGAGGGGGGGAGAGGGGCATGGAAGAAGGCTGGTGGT
GTCAACCGGGCGGATGGTCAAGGGAGTGTCAAAGGGGGGGCGGGTGTAGA
TGGGAAGTGAAAGCGTTGAGATAGAATGGAGGGGACAGAGAATGGAGGCA
TTTGTCCAGGACGAGGGAGGTGGCGACGGATGAAGAAATGTCGGACAGAC
CGCGTCAAAAAGACTTACCTTTCCCTCCCGAATCTTCACCTCTTTTTCAT
CCTCCCTCCTTTCCATTCGTCCAGTTCACGGAGCCCTACAAATTTCAGGG
CCACTTCGAATTTAGGGAGGTCAAACGGGTCTGAGGCTTCGGGAGTTAAG
AGGGGGAGAGAACCAGAGATGGGGATAGGGCAGTCATAGAAAGATAGATT
TAAAGAATGGGGCTGATCAGAATATGTGGAAGGAGATGAGGAAGAGAAGT
ATGAAGGAGAACCAAAGTGTGTTTGATAAATTATAACGATTTGAGCGCTT
GTGTGCGTGTCCGTCTATTTATGTATTT
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Coding sequence (CDS) from alignment at scaffold_38:101463..102690-

>mRNA_9683 ID=mRNA_9683|Name=jgi.p|Nanoce1779_2|280238|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_38:101463..102690- (Nannochloropsis oceanica)
TTCACGGAGCCCTACAAATTTCAGGGCCACTTCGAATTTAGGGAGGTCAA
ACGGGTCTGAGCTTCAAGGGGACGGTGGCCTCCTTGAAATTCACGGCCAA
GAACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTGTCAAGGCGAGAC
AGTGGAGATAGTTGTCGACAGCATTTTCTACTCCATTCCCAAGGCACCCA
AGGAAGGTGTAAATCCCAAAGATGCATCTGCAACTCGACATGGGATGGGG
GGCTGATGAGGAGGGCGGGGACTTCTACAACCCGGACGGGATCAAGGAAG
TTCACGGAGCCCTACAAATTTCAGGGCCACTTCGAATTTAGGGAGGTCAA
ACGGGTCTGAGCTTCAAGGGGACGGTGGCCTCCTTGAAATTCACGGCCAA
GAACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTGTCAAGGCGAGAC
AGTGGAGATAGTTGTCGACAGCATTTTCTACTCCATTCCCAAGGCACCCA
AGGAAGGTGTAAATCCCAAAGATGCATCTGCAACTCGACATGGGATGGGG
GGCTGATGAGGAGGGCGGGGACTTCTACAACCCGGACGGGATCAAGGAAG
TTCACGGAGCCCTACAAATTTCAGGGCCACTTCGAATTTAGGGAGGTCAA
ACGGGTCTGAGCTTCAAGGGGACGGTGGCCTCCTTGAAATTCACGGCCAA
GAACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTGTCAAGGCGAGAC
AGTGGAGATAGTTGTCGACAGCATTTTCTACTCCATTCCCAAGGCACCCA
AGGAAGGTGTAAATCCCAAAGATGCATCTGCAACTCGACATGGGATGGGG
GGCTGATGAGGAGGGCGGGGACTTCTACAACCCGGACGGGATCAAGGAAG
TTCACGGAGCCCTACAAATTTCAGGGCCACTTCGAATTTAGGGAGGTCAA
ACGGGTCTGAGCTTCAAGGGGACGGTGGCCTCCTTGAAATTCACGGCCAA
GAACGGCGTTGTATGCTCCGCCAACAGACCTGTTGTTGTCAAGGCGAGAC
AGTGGAGATAGTTGTCGACAGCATTTTCTACTCCATTCCCAAGGCACCCA
AGGAAGGTGTAAATCCCAAAGATGCATCTGCAACTCGACATGGGATGGGG
GGCTGATGAGGAGGGCGGGGACTTCTACAACCCGGACGGGATCAAGGAAG
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Synonyms
Publications