jgi.p|Nanoce1779_2|569281, mRNA_9681 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569281
Unique NamemRNA_9681
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length339
Alignment locationscaffold_38:95478..95816 +

Link to JBrowse

Properties
Property NameValue
TranscriptId569367
TrackFilteredModels2
ProteinId569281
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:95478..95816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569281gene_9681Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569281mRNA_9681-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9681CDS_9681Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9681 ID=mRNA_9681|Name=jgi.p|Nanoce1779_2|569281|organism=Nannochloropsis oceanica|type=mRNA|length=339bp
ATGGACGACCGGAAGGGATGGGAATGGCTGACCCTGACGTCCTCAGGCTC
TTGGTTCGGACCGACGCAGCGCACACATTCTGAACTCCTCCCCTCTCTCA
TCGACACTCACTTCTCAGCCAGGGCAGCATTGAGTTTGGTGACGTTCCGG
CCGTGCTTGAGGGGCATGACGTTCTCCTTGCTCGTCTCCCACTCCGCCGT
GTCTCCCATTGTAGCGACGTGCGGGCTCGGTCTGGTGTGCGTGAAGGGAG
GGAGGGAGAGTAAGCATTGCTCTTCTTCGAGATTGACGTGCCACAAGGTG
TGGAGGTGTCACAAGGTGTGGAGGTGTCAAGCTGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|569281

>mRNA_9681-protein ID=mRNA_9681-protein|Name=jgi.p|Nanoce1779_2|569281|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MDDRKGWEWLTLTSSGSWFGPTQRTHSELLPSLIDTHFSARAALSLVTFR
PCLRGMTFSLLVSHSAVSPIVATCGLGLVCVKGGRESKHCSSSRLTCHKV
WRCHKVWRCQAE*
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mRNA from alignment at scaffold_38:95478..95816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9681 ID=mRNA_9681|Name=jgi.p|Nanoce1779_2|569281|organism=Nannochloropsis oceanica|type=mRNA|length=339bp|location=Sequence derived from alignment at scaffold_38:95478..95816+ (Nannochloropsis oceanica)
ATGGACGACCGGAAGGGATGGGAATGGCTGACCCTGACGTCCTCAGGCTC
TTGGTTCGGACCGACGCAGCGCACACATTCTGAACTCCTCCCCTCTCTCA
TCGACACTCACTTCTCAGCCAGGGCAGCATTGAGTTTGGTGACGTTCCGG
CCGTGCTTGAGGGGCATGACGTTCTCCTTGCTCGTCTCCCACTCCGCCGT
GTCTCCCATTGTAGCGACGTGCGGGCTCGGTCTGGTGTGCGTGAAGGGAG
GGAGGGAGAGTAAGCATTGCTCTTCTTCGAGATTGACGTGCCACAAGGTG
TGGAGGTGTCACAAGGTGTGGAGGTGTCAAGCTGAGTGA
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Coding sequence (CDS) from alignment at scaffold_38:95478..95816+

>mRNA_9681 ID=mRNA_9681|Name=jgi.p|Nanoce1779_2|569281|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_38:95478..95816+ (Nannochloropsis oceanica)
ATGGACGACCGGAAGGGATGGGAATGGCTGACCCTGACGTCCTCAGGCTC
TTGGTTCGGACCGACGCAGCGCACACATTCTGAACTCCTCCCCTCTCTCA
TCGACACTCACTTCTCAGCCAGGGCAGCATTGAGTTTGGTGACGTTCCGG
CCGTGCTTGAGGGGCATGACGTTCTCCTTGCTCGTCTCCCACTCCGCCGT
GTCTCCCATTGTAGCGACGTGCGGGCTCGGTCTGGTGTGCGTGAAGGGAG
GGAGGGAGAGTAAGCATTGCTCTTCTTCGAGATTGACGTGCCACAAGGTG
TGGAGGTGTCACAAGGTGTGGAGGTGTCAAGCTGAGTGA
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Synonyms
Publications