jgi.p|Nanoce1779_2|574825, mRNA_968 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574825
Unique Name	mRNA_968
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2573
Alignment location	scaffold_2:882478..885050 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574911
Track	FilteredModels2
ProteinId	574825

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:882478..885050 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574825	gene_968	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574825	mRNA_968-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_968	CDS_968	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:882478..885050-
coding sequence from alignment at scaffold_2:882478..885050-

mRNA sequence

>mRNA_968 ID=mRNA_968|Name=jgi.p|Nanoce1779_2|574825|organism=Nannochloropsis oceanica|type=mRNA|length=2573bp
CGTTCTCACACTACCCCCCTCGGCCAGCGATGGTGTCCTCGCGCATGCTC
TACGCAGTAAAGAACAGCAACAGCAGCAACAGCAGCTGGTCGAGGGGGAC
TTGGTGGGTGTGCCACCGGTGGATATCGCGACCACTTGCGTCGCTATGTC
TGTCTTTCCTATTATCACCCTCTTGCAGCCCGGCAGTGATACGTACAAAA
TCCGAGGTCTCCTCCGGTGTGTAATTACGGCGCCACTCACCAGCAGTGAA
AGAAGCAGCAGCAGTAGCAGTGGTAGTGACAGTAGTGGTAGAAATAGCAG
TAGCACCAGCGACAACAGCAGTTTACTCACCAGGGAGGACGATGGGGTGC
TTGAAGCAGTGGCGCATGTGATAGGTGGATCCATCACGATCCTTGACTCC
GTCGTCGCTACCAATGCCCTCAAAGAACTCTATCAACGCGCAGACACCGC
CCTTGCCCATGCCCAATACAGCATCCAAGCTTCGCAAGCACGGACCAACC
AAGTAAAAGCCCTTTGCAAACGGGCCTTGGCGGCTGCTCGACCCTTGTGG
TGGGAATCCACCTCCTCCCTCCCCTCCCCTGCGCAGCTAATCACGGGACA
AGCATTTTGTGGTCAAGTAGCGCGTGTGGCTCAAGCAGCGCTGCAGCAGT
GCCAGCGTCTCTTTTCTACCACACGTGGTTGTGGAAGTGGTGGGTGTGGG
ATGAAAAATGAGGACTGTTTGAAGGCAATGCTGATATTGACTAAGGAGGG
AGGGTCGAGGGCAGGGGTGAGCCATCGATTGGATGTGTATGAGTGGGTGG
AAGGTGCGCAGCCGTCTGTGAGACGGCATGAGGTTAGACGTCCTACGGGT
CACGGGGTGGAAGGAGGGCTGTTGGGTTGGTGTTTGCGGAAGGCGGAAAT
GATGAATGTGGCGGAGCCGAGGAAGGAAGAAATATTTAACGCCCAGGTGG
ATGGGGAGGAGGAAGGGTCGATTCTGTTGGTGCCTTTGTGTTGCTGGCCG
GCGGGGAAGCAGGATGGGGCCGTAATGATGGGCGTGATGCGGGTTTGGCG
ACGAGATGGAGTGGGGAAGAGTAGCCTTAGCAACAGCAATAGCAGCAGTA
GCATTAGGCAGGCTTACAACACGAAGAAGCACAAGAATAAGAAATCAGGA
ACAGCTGCACTTGCTGGCAAGGCTTCACTTTTTACGCAGGACGATGAGAT
TTTGGCCGACATCTTCGCCGGTCAACTTTCAATGGCTCTTTCGTATGCTA
AGGCTTTAGATATCAGGAGCAAGCATTTGGTGCTGAAGGAGGAAGAGGGG
AGCAATCGTGGGACCAAGCGCTCCTCTGCCTCCACGCCCAAGCTCGCGCC
GCCCAACCTTCTAACAATTGCGTCTTCATCAATATCAGGAAGGACGGGGG
CAACTTTCACGCCATTAGGAGTAACTGCGGCAGCAGCAGCGGCTGCGGCG
CTGCCTTCGAAGTCGTCAATTGGGAATGCAGAAACAGGGAGACGGGAAAT
GAGTTTTTTCCTGGAGGATGAAGGAGGGGTAGTGGGGGAAGAAAATGGGG
ACCGTCACGGCCTCAACCGAAGTCAGCTAAATAAGATTAAGAAGCAGCTG
GAGGACATTCACCTCAGCACGCGACAAACATTTCCAAGCATGGGAGAAAG
AGCGTCATTGACGACACCACCAGCAGCAGGAGCAGCAACAGCAACAGCTG
GGAAATCAGCAGCAGCTTCATTGCCGTTACACTCCCCTGTGTCACCATCC
ATCGGTCTTCTGGACTCAACCAGCCTTAATGACAGCGACATCCTTACTGC
AGGCCTTTCGTCGATTCACCGAGGTCCCTCGGCACGCAATTGCAAGCACG
GCGGCAGGGCTTCGGCGATGGAAGCCATGAATAGGAGCGCAGAGCAGCTC
GAAAAGGCCTCCAGGTCGAGCAGCAGCAGCATCAGTAGCACCAGTAGCAC
CAGAAGCAGTGACAAAATGAAAGCTGTTGCCTCGAAATCTCTTTCCTTTC
GCCCTCCTGCCTTGTCTTTCACCCGCGAGGAGCATCTGGGAGGCGATACG
GCAGGTGCCGGCTCGACAGAAACAGAACCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGCTTTCACCGGTGGACCTCGCCCAAAAGATTGGGA
GGATGAAGGAGCAGAACCACCAGCTCTCGAAAAACTTGAGGACTTTTTTA
GGTGATTCTTCCTTGCTCTCAACAAGTGGTGTCTAAGCGAGTAAATGTCG
TTTTGTGGAGTGCATTCCGATATACTAGGCATTTGGCTGTGCGTTTGTGT
GTGTATTTACATATTTTACTAGTAGGTGTGTACGTGTGTACTTGTATGGG
CGCGGAGGGAGAAAGAAAGTGGCCCCTACGTCTGTAAGCACGTGTGAACT
CAGTAAACGAATTTCAGAGAGGCAATTTTCTTCCTTTCAGACGATTGACA
TTGGATTGAAGGTGAAACTAGAACCAGAAGATAAAGTGTTAAAAAGAGAT
TGTACTTGACCAGAAAGTAATGCCCCTTGGAAATCCATGGAGATGAGACG
AAAAAGAATATCACGCATTTCCA

protein sequence of jgi.p|Nanoce1779_2|574825

>mRNA_968-protein ID=mRNA_968-protein|Name=jgi.p|Nanoce1779_2|574825|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MSVFPIITLLQPGSDTYKIRGLLRCVITAPLTSSERSSSSSSGSDSSGRN
SSSTSDNSSLLTREDDGVLEAVAHVIGGSITILDSVVATNALKELYQRAD
TALAHAQYSIQASQARTNQVKALCKRALAAARPLWWESTSSLPSPAQLIT
GQAFCGQVARVAQAALQQCQRLFSTTRGCGSGGCGMKNEDCLKAMLILTK
EGGSRAGVSHRLDVYEWVEGAQPSVRRHEVRRPTGHGVEGGLLGWCLRKA
EMMNVAEPRKEEIFNAQVDGEEEGSILLVPLCCWPAGKQDGAVMMGVMRV
WRRDGVGKSSLSNSNSSSSIRQAYNTKKHKNKKSGTAALAGKASLFTQDD
EILADIFAGQLSMALSYAKALDIRSKHLVLKEEEGSNRGTKRSSASTPKL
APPNLLTIASSSISGRTGATFTPLGVTAAAAAAAALPSKSSIGNAETGRR
EMSFFLEDEGGVVGEENGDRHGLNRSQLNKIKKQLEDIHLSTRQTFPSMG
ERASLTTPPAAGAATATAGKSAAASLPLHSPVSPSIGLLDSTSLNDSDIL
TAGLSSIHRGPSARNCKHGGRASAMEAMNRSAEQLEKASRSSSSSISSTS
STRSSDKMKAVASKSLSFRPPALSFTREEHLGGDTAGAGSTETEPAAAAA
AAAAAAALSPVDLAQKIGRMKEQNHQLSKNLRTFLGDSSLLSTSGV*

mRNA from alignment at scaffold_2:882478..885050-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_968 ID=mRNA_968|Name=jgi.p|Nanoce1779_2|574825|organism=Nannochloropsis oceanica|type=mRNA|length=2573bp|location=Sequence derived from alignment at scaffold_2:882478..885050- (Nannochloropsis oceanica)
CGTTCTCACACTACCCCCCTCGGCCAGCGATGGTGTCCTCGCGCATGCTC
TACGCAGTAAAGAACAGCAACAGCAGCAACAGCAGCTGGTCGAGGGGGAC
TTGGTGGGTGTGCCACCGGTGGATATCGCGACCACTTGCGTCGCTATGTC
TGTCTTTCCTATTATCACCCTCTTGCAGCCCGGCAGTGATACGTACAAAA
TCCGAGGTCTCCTCCGGTGTGTAATTACGGCGCCACTCACCAGCAGTGAA
AGAAGCAGCAGCAGTAGCAGTGGTAGTGACAGTAGTGGTAGAAATAGCAG
TAGCACCAGCGACAACAGCAGTTTACTCACCAGGGAGGACGATGGGGTGC
TTGAAGCAGTGGCGCATGTGATAGGTGGATCCATCACGATCCTTGACTCC
GTCGTCGCTACCAATGCCCTCAAAGAACTCTATCAACGCGCAGACACCGC
CCTTGCCCATGCCCAATACAGCATCCAAGCTTCGCAAGCACGGACCAACC
AAGTAAAAGCCCTTTGCAAACGGGCCTTGGCGGCTGCTCGACCCTTGTGG
TGGGAATCCACCTCCTCCCTCCCCTCCCCTGCGCAGCTAATCACGGGACA
AGCATTTTGTGGTCAAGTAGCGCGTGTGGCTCAAGCAGCGCTGCAGCAGT
GCCAGCGTCTCTTTTCTACCACACGTGGTTGTGGAAGTGGTGGGTGTGGG
ATGAAAAATGAGGACTGTTTGAAGGCAATGCTGATATTGACTAAGGAGGG
AGGGTCGAGGGCAGGGGTGAGCCATCGATTGGATGTGTATGAGTGGGTGG
AAGGTGCGCAGCCGTCTGTGAGACGGCATGAGGTTAGACGTCCTACGGGT
CACGGGGTGGAAGGAGGGCTGTTGGGTTGGTGTTTGCGGAAGGCGGAAAT
GATGAATGTGGCGGAGCCGAGGAAGGAAGAAATATTTAACGCCCAGGTGG
ATGGGGAGGAGGAAGGGTCGATTCTGTTGGTGCCTTTGTGTTGCTGGCCG
GCGGGGAAGCAGGATGGGGCCGTAATGATGGGCGTGATGCGGGTTTGGCG
ACGAGATGGAGTGGGGAAGAGTAGCCTTAGCAACAGCAATAGCAGCAGTA
GCATTAGGCAGGCTTACAACACGAAGAAGCACAAGAATAAGAAATCAGGA
ACAGCTGCACTTGCTGGCAAGGCTTCACTTTTTACGCAGGACGATGAGAT
TTTGGCCGACATCTTCGCCGGTCAACTTTCAATGGCTCTTTCGTATGCTA
AGGCTTTAGATATCAGGAGCAAGCATTTGGTGCTGAAGGAGGAAGAGGGG
AGCAATCGTGGGACCAAGCGCTCCTCTGCCTCCACGCCCAAGCTCGCGCC
GCCCAACCTTCTAACAATTGCGTCTTCATCAATATCAGGAAGGACGGGGG
CAACTTTCACGCCATTAGGAGTAACTGCGGCAGCAGCAGCGGCTGCGGCG
CTGCCTTCGAAGTCGTCAATTGGGAATGCAGAAACAGGGAGACGGGAAAT
GAGTTTTTTCCTGGAGGATGAAGGAGGGGTAGTGGGGGAAGAAAATGGGG
ACCGTCACGGCCTCAACCGAAGTCAGCTAAATAAGATTAAGAAGCAGCTG
GAGGACATTCACCTCAGCACGCGACAAACATTTCCAAGCATGGGAGAAAG
AGCGTCATTGACGACACCACCAGCAGCAGGAGCAGCAACAGCAACAGCTG
GGAAATCAGCAGCAGCTTCATTGCCGTTACACTCCCCTGTGTCACCATCC
ATCGGTCTTCTGGACTCAACCAGCCTTAATGACAGCGACATCCTTACTGC
AGGCCTTTCGTCGATTCACCGAGGTCCCTCGGCACGCAATTGCAAGCACG
GCGGCAGGGCTTCGGCGATGGAAGCCATGAATAGGAGCGCAGAGCAGCTC
GAAAAGGCCTCCAGGTCGAGCAGCAGCAGCATCAGTAGCACCAGTAGCAC
CAGAAGCAGTGACAAAATGAAAGCTGTTGCCTCGAAATCTCTTTCCTTTC
GCCCTCCTGCCTTGTCTTTCACCCGCGAGGAGCATCTGGGAGGCGATACG
GCAGGTGCCGGCTCGACAGAAACAGAACCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGCTTTCACCGGTGGACCTCGCCCAAAAGATTGGGA
GGATGAAGGAGCAGAACCACCAGCTCTCGAAAAACTTGAGGACTTTTTTA
GGTGATTCTTCCTTGCTCTCAACAAGTGGTGTCTAAGCGAGTAAATGTCG
TTTTGTGGAGTGCATTCCGATATACTAGGCATTTGGCTGTGCGTTTGTGT
GTGTATTTACATATTTTACTAGTAGGTGTGTACGTGTGTACTTGTATGGG
CGCGGAGGGAGAAAGAAAGTGGCCCCTACGTCTGTAAGCACGTGTGAACT
CAGTAAACGAATTTCAGAGAGGCAATTTTCTTCCTTTCAGACGATTGACA
TTGGATTGAAGGTGAAACTAGAACCAGAAGATAAAGTGTTAAAAAGAGAT
TGTACTTGACCAGAAAGTAATGCCCCTTGGAAATCCATGGAGATGAGACG
AAAAAGAATATCACGCATTTCCA

Coding sequence (CDS) from alignment at scaffold_2:882478..885050-

>mRNA_968 ID=mRNA_968|Name=jgi.p|Nanoce1779_2|574825|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at scaffold_2:882478..885050- (Nannochloropsis oceanica)
ATGTCTGTCTTTCCTATTATCACCCTCTTGCAGCCCGGCAGTGATACGTA
CAAAATCCGAGGTCTCCTCCGGTGTGTAATTACGGCGCCACTCACCAGCA
GTGAAAGAAGCAGCAGCAGTAGCAGTGGTAGTGACAGTAGTGGTAGAAAT
AGCAGTAGCACCAGCGACAACAGCAGTTTACTCACCAGGGAGGACGATGG
GGTGCTTGAAGCAGTGGCGCATGTGATAGGTGGATCCATCACGATCCTTG
ACTCCGTCGTCGCTACCAATGCCCTCAAAGAACTCTATCAACGCGCAGAC
ACCGCCCTTGCCCATGCCCAATACAGCATCCAAGCTTCGCAAGCACGGAC
CAACCAAGTAAAAGCCCTTTGCAAACGGGCCTTGGCGGCTGCTCGACCCT
TGTGGTGGGAATCCACCTCCTCCCTCCCCTCCCCTGCGCAGCTAATCACG
GGACAAGCATTTTGTGGTCAAGTAGCGCGTGTGGCTCAAGCAGCGCTGCA
GCAGTGCCAGCGTCTCTTTTCTACCACACGTGGTTGTGGAAGTGGTGGGT
GTGGGATGAAAAATGAGGACTGTTTGAAGGCAATGCTGATATTGACTAAG
GAGGGAGGGTCGAGGGCAGGGGTGAGCCATCGATTGGATGTGTATGAGTG
GGTGGAAGGTGCGCAGCCGTCTGTGAGACGGCATGAGGTTAGACGTCCTA
CGGGTCACGGGGTGGAAGGAGGGCTGTTGGGTTGGTGTTTGCGGAAGGCG
GAAATGATGAATGTGGCGGAGCCGAGGAAGGAAGAAATATTTAACGCCCA
GGTGGATGGGGAGGAGGAAGGGTCGATTCTGTTGGTGCCTTTGTGTTGCT
GGCCGGCGGGGAAGCAGGATGGGGCCGTAATGATGGGCGTGATGCGGGTT
TGGCGACGAGATGGAGTGGGGAAGAGTAGCCTTAGCAACAGCAATAGCAG
CAGTAGCATTAGGCAGGCTTACAACACGAAGAAGCACAAGAATAAGAAAT
CAGGAACAGCTGCACTTGCTGGCAAGGCTTCACTTTTTACGCAGGACGAT
GAGATTTTGGCCGACATCTTCGCCGGTCAACTTTCAATGGCTCTTTCGTA
TGCTAAGGCTTTAGATATCAGGAGCAAGCATTTGGTGCTGAAGGAGGAAG
AGGGGAGCAATCGTGGGACCAAGCGCTCCTCTGCCTCCACGCCCAAGCTC
GCGCCGCCCAACCTTCTAACAATTGCGTCTTCATCAATATCAGGAAGGAC
GGGGGCAACTTTCACGCCATTAGGAGTAACTGCGGCAGCAGCAGCGGCTG
CGGCGCTGCCTTCGAAGTCGTCAATTGGGAATGCAGAAACAGGGAGACGG
GAAATGAGTTTTTTCCTGGAGGATGAAGGAGGGGTAGTGGGGGAAGAAAA
TGGGGACCGTCACGGCCTCAACCGAAGTCAGCTAAATAAGATTAAGAAGC
AGCTGGAGGACATTCACCTCAGCACGCGACAAACATTTCCAAGCATGGGA
GAAAGAGCGTCATTGACGACACCACCAGCAGCAGGAGCAGCAACAGCAAC
AGCTGGGAAATCAGCAGCAGCTTCATTGCCGTTACACTCCCCTGTGTCAC
CATCCATCGGTCTTCTGGACTCAACCAGCCTTAATGACAGCGACATCCTT
ACTGCAGGCCTTTCGTCGATTCACCGAGGTCCCTCGGCACGCAATTGCAA
GCACGGCGGCAGGGCTTCGGCGATGGAAGCCATGAATAGGAGCGCAGAGC
AGCTCGAAAAGGCCTCCAGGTCGAGCAGCAGCAGCATCAGTAGCACCAGT
AGCACCAGAAGCAGTGACAAAATGAAAGCTGTTGCCTCGAAATCTCTTTC
CTTTCGCCCTCCTGCCTTGTCTTTCACCCGCGAGGAGCATCTGGGAGGCG
ATACGGCAGGTGCCGGCTCGACAGAAACAGAACCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGCTTTCACCGGTGGACCTCGCCCAAAAGAT
TGGGAGGATGAAGGAGCAGAACCACCAGCTCTCGAAAAACTTGAGGACTT
TTTTAGGTGATTCTTCCTTGCTCTCAACAAGTGGTGTCTAA

Synonyms

Publications