jgi.p|Nanoce1779_2|607303, mRNA_9677 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607303
Unique NamemRNA_9677
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length861
Alignment locationscaffold_38:80894..82500 -

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Properties
Property NameValue
TranscriptId607389
TrackFilteredModels2
ProteinId607303
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:80894..82500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607303gene_9677Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607303mRNA_9677-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9677CDS_9677Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9677 ID=mRNA_9677|Name=jgi.p|Nanoce1779_2|607303|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
AGGGTGGCAAAATGGCAGGCATACGACGTAGCGTCTCGATATGTAGCTTC
CACATCCTCCTCCTGCTCATGGTGCCGCTAATCACAGCCGCGTGGGGGCT
TTCAACGTCCACAGCCCGCCACCGAAGCATTGGGCAAGGTAATGAGAGTG
GACCGATCGGGCGGCGGGGCCAAGACGGAGATAGATGATAGGAGTCGGAC
GGATGATGGGTGGAGGATTATGGGGAGGTCGAGTACAAGGCAACTAAGCG
GAGACACGGCATTTTATCAACCGTCACGCAGGCATGATCAACACCCTGGC
CTCTCAAGGAACTGCCTTGTTTGCGACTGGCTCGAGCTCCTCCACCACTA
TCCCCACCACCTGGGAGGAGCAAGGCATCGCCGGCTTTGTCCCACCTCCG
CAGGCTGTGGTGGCGCTGCTGGGGCGTATGGGACCGGGAGGGTTTGGAGG
GACTGGCTTAAAATTTGAGGAAGTCTTGCAGGCGATGGAAACTTATTACG
AGTACACACCCAAGCCCTTCGTCAACGGCGACGCATTCAGCCCCCCTGGC
ACCAACGTTGGCTCTTGCAAGCTCCTGTCCCTTGGCATCCTACATGGCCT
GCCGCCTGCCTCCTTGCTGGCTCTTTTTGGCGAGCACTATAGGTCCGTGA
TCCAGACGCCCAAAGGGAGCGACCACATCAACATTCGCAACCTCCTCTCC
AAGGGATGGCGGGCCGTCTCTTTCCCAGAAGGACTTAGCTTGCGGCTCAA
GGAGTAGCAACTGAAAGCGACGGGGGAACGACTCACACTGCGCATTCAAA
GAAGGCAATTTATATTAAAAATGCATTGAATACACAATGGAAGAAGCAAT
TTGATCACCGA
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protein sequence of jgi.p|Nanoce1779_2|607303

>mRNA_9677-protein ID=mRNA_9677-protein|Name=jgi.p|Nanoce1779_2|607303|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MINTLASQGTALFATGSSSSTTIPTTWEEQGIAGFVPPPQAVVALLGRMG
PGGFGGTGLKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSL
GILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFPEG
LSLRLKE*
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mRNA from alignment at scaffold_38:80894..82500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9677 ID=mRNA_9677|Name=jgi.p|Nanoce1779_2|607303|organism=Nannochloropsis oceanica|type=mRNA|length=1607bp|location=Sequence derived from alignment at scaffold_38:80894..82500- (Nannochloropsis oceanica)
AGGGTGGCAAAATGGCAGGCATACGACGTAGCGTCTCGATATGTAGCTTC
CACATCCTCCTCCTGCTCATGGTGCCGCTAATCACAGCCGCGTGGGGGCT
TTCAACGTCCACAGCCCGCCACCGAAGCATTGGGCAAGGTAATGAGAGTG
GACCGATCGGGCGGCGGGGCCAAGACGGAGATAGATGATAGGAGTCGGAC
GGATGATGGGTGGAGGATTATGGGGAGGTCGAGTACAAGGCAACTAAGCG
GAGACACGGCATTTTATCAACCGTCACGCAGGCATGATCAACACCCTGGC
CTCTCAAGGAACTGCCTTGTTTGCGACTGGCTCGAGGTAAGTTAACTCTC
TGTGTGGCTTCACCCCACCCAGCGCATCCTCTCCCTTCTCCCTCCCGCTC
CCTCGGATCATTCACACGCATCCCATCCACACACCATTCACCGTTCCAGC
TCCTCCACCACTATCCCCACCACCTGGGAGGAGCAAGGCATCGCCGGCTT
TGTCCCACCTCCGCAGGCTGTGGTGGCGCTGCTGGGGCGTATGGGACCGG
GAGGGTTTGGAGGGACTGGCTTAAAATTTGAGGAAGTCTTGCAGGTTGGT
CTGGGTGTACAGGGAGAAATTTTTAGGATGGGAAGCCGATATAAAAAGAG
GGGCGGGGGGTAGGGGAGATGAAAATGTGCTCGTGCTAGAAGAGTGGCTT
GGATATGATCCATTGCGTACGAAGCATATTCGCAATTACTGCAACGAGAG
GCAGGCGACCACAGGCAACCACTGGCCTACCCAAAGCGATTTGCCAACCG
ATTTATCAAACCGCTCCGACTTTCTGGGTCGGATGAATAGCAGTTTACAG
TCTTGTCTTCAGCCGACTCTAAGTGTCGCACCTTTTGTACTTCTACCCTT
TCCCGCAGGCGATGGAAACTTATTACGAGTACACACCCAAGCCCTTCGTC
AACGGCGACGCATTCAGCCCCCCTGGCACCAACGTTGTACGTTTATGCTT
GAGTTATAGATTGTAACATATTCTATGCAGGGAAGCAGATGGATTCACAT
TCTTTCCTTCCGCCTTCTATCCATTTCGCTCTTGTATCTCCGTGCAGGGC
TCTTGCAAGCTCCTGTCCCTTGGCATCCTACATGGCCTGCCGCCTGCCTC
CTTGCTGGCTCTTTTTGGTACGTACCAGGAGGATCAATGCCTTTCATGTG
CTTTTTCCTCCTCAATGGATGTGCCTCTTCTTATATCCACTATGACCCAT
TCGCGTGCAACCTCCTTACCTCCCTTGTCCGCGGGCTTCACAGTCTCTTC
TCCGTGAAAGCTGCCAACATCTAACCACGTGCTTATCGCTTCTCCATTCG
TTACTTTTACTCCCAACTGAAAAAGGCGAGCACTATAGGTCCGTGATCCA
GACGCCCAAAGGGAGCGACCACATCAACATTCGCAACCTCCTCTCCAAGG
GATGGCGGGCCGTCTCTTTCCCAGAAGGACTTAGCTTGCGGCTCAAGGAG
TAGCAACTGAAAGCGACGGGGGAACGACTCACACTGCGCATTCAAAGAAG
GCAATTTATATTAAAAATGCATTGAATACACAATGGAAGAAGCAATTTGA
TCACCGA
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Coding sequence (CDS) from alignment at scaffold_38:80894..82500-

>mRNA_9677 ID=mRNA_9677|Name=jgi.p|Nanoce1779_2|607303|organism=Nannochloropsis oceanica|type=CDS|length=2370bp|location=Sequence derived from alignment at scaffold_38:80894..82500- (Nannochloropsis oceanica)
GCGAGCACTATAGGTCCGTGATCCAGACGCCCAAAGGGAGCGACCACATC
AACATTCGCAACCTCCTCTCCAAGGGATGGCGGGCCGTCTCTTTCCCAGA
AGGACTTAGCTTGCGGCTCAAGGAGTAGGGCTCTTGCAAGCTCCTGTCCC
TTGGCATCCTACATGGCCTGCCGCCTGCCTCCTTGCTGGCTCTTTTTGGC
GATGGAAACTTATTACGAGTACACACCCAAGCCCTTCGTCAACGGCGACG
CATTCAGCCCCCCTGGCACCAACGTTCTCCTCCACCACTATCCCCACCAC
CTGGGAGGAGCAAGGCATCGCCGGCTTTGTCCCACCTCCGCAGGCTGTGG
TGGCGCTGCTGGGGCGTATGGGACCGGGAGGGTTTGGAGGGACTGGCTTA
AAATTTGAGGAAGTCTTGCAGATGATCAACACCCTGGCCTCTCAAGGAAC
TGCCTTGTTTGCGACTGGCTCGAGGCGAGCACTATAGGTCCGTGATCCAG
ACGCCCAAAGGGAGCGACCACATCAACATTCGCAACCTCCTCTCCAAGGG
ATGGCGGGCCGTCTCTTTCCCAGAAGGACTTAGCTTGCGGCTCAAGGAGT
AGGGCTCTTGCAAGCTCCTGTCCCTTGGCATCCTACATGGCCTGCCGCCT
GCCTCCTTGCTGGCTCTTTTTGGCGATGGAAACTTATTACGAGTACACAC
CCAAGCCCTTCGTCAACGGCGACGCATTCAGCCCCCCTGGCACCAACGTT
CTCCTCCACCACTATCCCCACCACCTGGGAGGAGCAAGGCATCGCCGGCT
TTGTCCCACCTCCGCAGGCTGTGGTGGCGCTGCTGGGGCGTATGGGACCG
GGAGGGTTTGGAGGGACTGGCTTAAAATTTGAGGAAGTCTTGCAGATGAT
CAACACCCTGGCCTCTCAAGGAACTGCCTTGTTTGCGACTGGCTCGAGGC
GAGCACTATAGGTCCGTGATCCAGACGCCCAAAGGGAGCGACCACATCAA
CATTCGCAACCTCCTCTCCAAGGGATGGCGGGCCGTCTCTTTCCCAGAAG
GACTTAGCTTGCGGCTCAAGGAGTAGGGCTCTTGCAAGCTCCTGTCCCTT
GGCATCCTACATGGCCTGCCGCCTGCCTCCTTGCTGGCTCTTTTTGGCGA
TGGAAACTTATTACGAGTACACACCCAAGCCCTTCGTCAACGGCGACGCA
TTCAGCCCCCCTGGCACCAACGTTCTCCTCCACCACTATCCCCACCACCT
GGGAGGAGCAAGGCATCGCCGGCTTTGTCCCACCTCCGCAGGCTGTGGTG
GCGCTGCTGGGGCGTATGGGACCGGGAGGGTTTGGAGGGACTGGCTTAAA
ATTTGAGGAAGTCTTGCAGATGATCAACACCCTGGCCTCTCAAGGAACTG
CCTTGTTTGCGACTGGCTCGAGGCGAGCACTATAGGTCCGTGATCCAGAC
GCCCAAAGGGAGCGACCACATCAACATTCGCAACCTCCTCTCCAAGGGAT
GGCGGGCCGTCTCTTTCCCAGAAGGACTTAGCTTGCGGCTCAAGGAGTAG
GGCTCTTGCAAGCTCCTGTCCCTTGGCATCCTACATGGCCTGCCGCCTGC
CTCCTTGCTGGCTCTTTTTGGCGATGGAAACTTATTACGAGTACACACCC
AAGCCCTTCGTCAACGGCGACGCATTCAGCCCCCCTGGCACCAACGTTCT
CCTCCACCACTATCCCCACCACCTGGGAGGAGCAAGGCATCGCCGGCTTT
GTCCCACCTCCGCAGGCTGTGGTGGCGCTGCTGGGGCGTATGGGACCGGG
AGGGTTTGGAGGGACTGGCTTAAAATTTGAGGAAGTCTTGCAGATGATCA
ACACCCTGGCCTCTCAAGGAACTGCCTTGTTTGCGACTGGCTCGAGGCGA
GCACTATAGGTCCGTGATCCAGACGCCCAAAGGGAGCGACCACATCAACA
TTCGCAACCTCCTCTCCAAGGGATGGCGGGCCGTCTCTTTCCCAGAAGGA
CTTAGCTTGCGGCTCAAGGAGTAGGGCTCTTGCAAGCTCCTGTCCCTTGG
CATCCTACATGGCCTGCCGCCTGCCTCCTTGCTGGCTCTTTTTGGCGATG
GAAACTTATTACGAGTACACACCCAAGCCCTTCGTCAACGGCGACGCATT
CAGCCCCCCTGGCACCAACGTTCTCCTCCACCACTATCCCCACCACCTGG
GAGGAGCAAGGCATCGCCGGCTTTGTCCCACCTCCGCAGGCTGTGGTGGC
GCTGCTGGGGCGTATGGGACCGGGAGGGTTTGGAGGGACTGGCTTAAAAT
TTGAGGAAGTCTTGCAGATGATCAACACCCTGGCCTCTCAAGGAACTGCC
TTGTTTGCGACTGGCTCGAG
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Synonyms
Publications