jgi.p|Nanoce1779_2|642669, mRNA_9670 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642669
Unique NamemRNA_9670
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1146
Alignment locationscaffold_38:48193..49443 -

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Properties
Property NameValue
TranscriptId642755
TrackFilteredModels2
ProteinId642669
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:48193..49443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642669gene_9670Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642669mRNA_9670-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9670CDS_9670Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9670 ID=mRNA_9670|Name=jgi.p|Nanoce1779_2|642669|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
ATGAGCGACAGCGATATTTACCAGATCCTCTACCGTAGCTTTGATTGTCT
TGTACAGCAAATCGTCATGCCCGCTATACGTGGCCGGAGTCAGCGAAAAT
TGCGCAGCTTTCAACGCCCAGGCTGCAACAGCGGGAATCTGGCTGACTTT
GGAACTACCCAGACAGAGGGATGGCGGGCGCTGGCGGAGAGATACTGGTG
TATTTTGGAGGAGCAACTGTACCCAGCGGTGATTTCAAGCCGCCTTAGCC
AGCAGAGAGGCATGTATATCAACTCGAGCAGGGCGCTAAAGGCGAATTTA
CGTTCTCTACGGCAGTGCCCCAAGGGTCTAGTTGTCTGCGCAGTGGTGAA
AAACGAAGCGGCCTACATCCAGGAGTGGCTGACCTTCCACCTTCATAGCG
GTGTGGAGCACTTCTATCTGTACTTCAATGAAGACGAGGAAGATACACTT
GCGGTGGTGCAACCGTTTGTGGACGCAGGGATTGTGACAACGGAGAATAT
AGAAGGGGAGGGCGTCCAGGGGTTGGTCTATAACAAATGCCTCGGCAACG
TCAAGGTCAACCGGCCGAGTGCCAAGTGGATTTCTTTTCAGGACGTAGAT
GAATATCTATTTCGTGTAAACCAGGAGTGTATGATGGAATTGCTGGAATC
CTTGCACGACCATGCGGCACTGGCCGTAAACTGGCGTCTCTACTCGTATT
CGAACCACGTATTGCAGCTGCCGCGGGAGCTGCTGTTGATGGAGACTAAT
GTGCACACGCTCGGCGTAGACCGTCATGTTAAGAGTGTGGTACACGTGGA
TCACACCTTGAGCTGCAACCACCCCCATTTTTGTTTATATGAGTCGGGAC
AACATGCCAAGGACGAAGTGGGCCGCCCGGTAGAAGGCCCTTTCAACGAT
GACATCCCCTCCCCTCAGCAACTCCGCATGCACCACTATCACAAGCGTAC
TCTTCAGGACTTTCTTATGAAGCGTTTTAGGGGGCGGGCAGACCTACAAG
TGACCGAGTTTGATTTGTCAGCATTGGCAAACCAAGTTAGACAAGACTTT
ATGAACTCACATGTGGATGAAGACGTGGAGTCTATCAAGTTTATGTTCGA
CCCTGTTCGGGCTCTTTTGGGTCTTCCGATGACCAAAGACAAATGA
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protein sequence of jgi.p|Nanoce1779_2|642669

>mRNA_9670-protein ID=mRNA_9670-protein|Name=jgi.p|Nanoce1779_2|642669|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MSDSDIYQILYRSFDCLVQQIVMPAIRGRSQRKLRSFQRPGCNSGNLADF
GTTQTEGWRALAERYWCILEEQLYPAVISSRLSQQRGMYINSSRALKANL
RSLRQCPKGLVVCAVVKNEAAYIQEWLTFHLHSGVEHFYLYFNEDEEDTL
AVVQPFVDAGIVTTENIEGEGVQGLVYNKCLGNVKVNRPSAKWISFQDVD
EYLFRVNQECMMELLESLHDHAALAVNWRLYSYSNHVLQLPRELLLMETN
VHTLGVDRHVKSVVHVDHTLSCNHPHFCLYESGQHAKDEVGRPVEGPFND
DIPSPQQLRMHHYHKRTLQDFLMKRFRGRADLQVTEFDLSALANQVRQDF
MNSHVDEDVESIKFMFDPVRALLGLPMTKDK*
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mRNA from alignment at scaffold_38:48193..49443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9670 ID=mRNA_9670|Name=jgi.p|Nanoce1779_2|642669|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp|location=Sequence derived from alignment at scaffold_38:48193..49443- (Nannochloropsis oceanica)
ATGAGCGACAGCGATATTTACCAGATCCTCTACCGTAGCTTTGATTGTCT
TGTACAGCAAATCGTCATGCCCGCTATACGTGGCCGGAGTCAGCGAAAAT
TGCGCAGCTTTCAACGCCCAGGCTGCAACAGCGGGAATCTGGCTGACTTT
GGAACTACCCAGACAGAGGGATGGCGGGCGCTGGCGGAGAGATACTGGTG
TATTTTGGAGGAGCAACTGTACCCAGCGGTGATTTCAAGCCGCCTTAGCC
AGCAGAGAGGCATGTATATCAACTCGAGCAGGTAAAGTCCGTATGAAGAC
GTGTAATTCTGAGGACAAGAGTGTCCACAGGCGCGAAAAAGTCAAACCCG
ACCATTTAATACTCTCTTTTTGCACTTATGCTCTAGGGCGCTAAAGGCGA
ATTTACGTTCTCTACGGCAGTGCCCCAAGGGTCTAGTTGTCTGCGCAGTG
GTGAAAAACGAAGCGGCCTACATCCAGGAGTGGCTGACCTTCCACCTTCA
TAGCGGTGTGGAGCACTTCTATCTGTACTTCAATGAAGACGAGGAAGATA
CACTTGCGGTGGTGCAACCGTTTGTGGACGCAGGGATTGTGACAACGGAG
AATATAGAAGGGGAGGGCGTCCAGGGGTTGGTCTATAACAAATGCCTCGG
CAACGTCAAGGTCAACCGGCCGAGTGCCAAGTGGATTTCTTTTCAGGACG
TAGATGAATATCTATTTCGTGTAAACCAGGAGTGTATGATGGAATTGCTG
GAATCCTTGCACGACCATGCGGCACTGGCCGTAAACTGGCGTCTCTACTC
GTATTCGAACCACGTATTGCAGCTGCCGCGGGAGCTGCTGTTGATGGAGA
CTAATGTGCACACGCTCGGCGTAGACCGTCATGTTAAGAGTGTGGTACAC
GTGGATCACACCTTGAGCTGCAACCACCCCCATTTTTGTTTATATGAGTC
GGGACAACATGCCAAGGACGAAGTGGGCCGCCCGGTAGAAGGCCCTTTCA
ACGATGACATCCCCTCCCCTCAGCAACTCCGCATGCACCACTATCACAAG
CGTACTCTTCAGGACTTTCTTATGAAGCGTTTTAGGGGGCGGGCAGACCT
ACAAGTGACCGAGTTTGATTTGTCAGCATTGGCAAACCAAGTTAGACAAG
ACTTTATGAACTCACATGTGGATGAAGACGTGGAGTCTATCAAGTTTATG
TTCGACCCTGTTCGGGCTCTTTTGGGTCTTCCGATGACCAAAGACAAATG
A
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Coding sequence (CDS) from alignment at scaffold_38:48193..49443-

>mRNA_9670 ID=mRNA_9670|Name=jgi.p|Nanoce1779_2|642669|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_38:48193..49443- (Nannochloropsis oceanica)
GGCGCTAAAGGCGAATTTACGTTCTCTACGGCAGTGCCCCAAGGGTCTAG
TTGTCTGCGCAGTGGTGAAAAACGAAGCGGCCTACATCCAGGAGTGGCTG
ACCTTCCACCTTCATAGCGGTGTGGAGCACTTCTATCTGTACTTCAATGA
AGACGAGGAAGATACACTTGCGGTGGTGCAACCGTTTGTGGACGCAGGGA
TTGTGACAACGGAGAATATAGAAGGGGAGGGCGTCCAGGGGTTGGTCTAT
AACAAATGCCTCGGCAACGTCAAGGTCAACCGGCCGAGTGCCAAGTGGAT
TTCTTTTCAGGACGTAGATGAATATCTATTTCGTGTAAACCAGGAGTGTA
TGATGGAATTGCTGGAATCCTTGCACGACCATGCGGCACTGGCCGTAAAC
TGGCGTCTCTACTCGTATTCGAACCACGTATTGCAGCTGCCGCGGGAGCT
GCTGTTGATGGAGACTAATGTGCACACGCTCGGCGTAGACCGTCATGTTA
AGAGTGTGGTACACGTGGATCACACCTTGAGCTGCAACCACCCCCATTTT
TGTTTATATGAGTCGGGACAACATGCCAAGGACGAAGTGGGCCGCCCGGT
AGAAGGCCCTTTCAACGATGACATCCCCTCCCCTCAGCAACTCCGCATGC
ACCACTATCACAAGCGTACTCTTCAGGACTTTCTTATGAAGCGTTTTAGG
GGGCGGGCAGACCTACAAGTGACCGAGTTTGATTTGTCAGCATTGGCAAA
CCAAGTTAGACAAGACTTTATGAACTCACATGTGGATGAAGACGTGGAGT
CTATCAAGTTTATGTTCGACCCTGTTCGGGCTCTTTTGGGTCTTCCGATG
ACCAAAGACAAATGAATGAGCGACAGCGATATTTACCAGATCCTCTACCG
TAGCTTTGATTGTCTTGTACAGCAAATCGTCATGCCCGCTATACGTGGCC
GGAGTCAGCGAAAATTGCGCAGCTTTCAACGCCCAGGCTGCAACAGCGGG
AATCTGGCTGACTTTGGAACTACCCAGACAGAGGGATGGCGGGCGCTGGC
GGAGAGATACTGGTGTATTTTGGAGGAGCAACTGTACCCAGCGGTGATTT
CAAGCCGCCTTAGCCAGCAGAGAGGCATGTATATCAACTCGAGCAGGGCG
CTAAAGGCGAATTTACGTTCTCTACGGCAGTGCCCCAAGGGTCTAGTTGT
CTGCGCAGTGGTGAAAAACGAAGCGGCCTACATCCAGGAGTGGCTGACCT
TCCACCTTCATAGCGGTGTGGAGCACTTCTATCTGTACTTCAATGAAGAC
GAGGAAGATACACTTGCGGTGGTGCAACCGTTTGTGGACGCAGGGATTGT
GACAACGGAGAATATAGAAGGGGAGGGCGTCCAGGGGTTGGTCTATAACA
AATGCCTCGGCAACGTCAAGGTCAACCGGCCGAGTGCCAAGTGGATTTCT
TTTCAGGACGTAGATGAATATCTATTTCGTGTAAACCAGGAGTGTATGAT
GGAATTGCTGGAATCCTTGCACGACCATGCGGCACTGGCCGTAAACTGGC
GTCTCTACTCGTATTCGAACCACGTATTGCAGCTGCCGCGGGAGCTGCTG
TTGATGGAGACTAATGTGCACACGCTCGGCGTAGACCGTCATGTTAAGAG
TGTGGTACACGTGGATCACACCTTGAGCTGCAACCACCCCCATTTTTGTT
TATATGAGTCGGGACAACATGCCAAGGACGAAGTGGGCCGCCCGGTAGAA
GGCCCTTTCAACGATGACATCCCCTCCCCTCAGCAACTCCGCATGCACCA
CTATCACAAGCGTACTCTTCAGGACTTTCTTATGAAGCGTTTTAGGGGGC
GGGCAGACCTACAAGTGACCGAGTTTGATTTGTCAGCATTGGCAAACCAA
GTTAGACAAGACTTTATGAACTCACATGTGGATGAAGACGTGGAGTCTAT
CAAGTTTATGTTCGACCCTGTTCGGGCTCTTTTGGGTCTTCCGATGACCA
AAGACAAATGAATGAGCGACAGCGATATTTACCAGATCCTCTACCGTAGC
TTTGATTGTCTTGTACAGCAAATCGTCATGCCCGCTATACGTGGCCGGAG
TCAGCGAAAATTGCGCAGCTTTCAACGCCCAGGCTGCAACAGCGGGAATC
TGGCTGACTTTGGAACTACCCAGACAGAGGGATGGCGGGCGCTGGCGGAG
AGATACTGGTGTATTTTGGAGGAGCAACTGTACCCAGCGGTGATTTCAAG
CCGCCTTAGCCAGCAGAGAGGCATGTATATCAACTCGAGCAG
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Synonyms
Publications