jgi.p|Nanoce1779_2|574823, mRNA_967 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574823
Unique Name	mRNA_967
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1850
Alignment location	scaffold_2:880618..882467 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574909
Track	FilteredModels2
ProteinId	574823

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:880618..882467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574823	gene_967	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574823	mRNA_967-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_967	CDS_967	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:880618..882467+
coding sequence from alignment at scaffold_2:880618..882467+

mRNA sequence

>mRNA_967 ID=mRNA_967|Name=jgi.p|Nanoce1779_2|574823|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp
ACAGCACGACGCAAAGGGCAATATGCCAACCTTGAGCCCAGCGCTGGTAT
CCCCACGGAGCTCTGTCGCCGGCAGGCAAACCACAGACGCAGGCTCCCCT
TCTTTACCCACCCCTTCCACTGTGTCGCCCGACAAGACGGCGTTGCGGTG
GCTGGAGACCAGTGCCACACGCCCCAAGCTCTACCACGCACCGGAGCGAC
TGGGTGCGGGCCATTATCATCATGCACACCACGAGATTCTAACGCCCGAC
CACGCTCAGCGGCAATACACGCTCATTATGCAGGACTTGAGTAAGAAGGA
TCCAGAATGGCTGGATGACCTGCCGCTTTTTGGTGCGCCCGCTGCCTCGT
TTCACGACCATCCCTTGACGCGGGAGCAGGAAGCTGCAAGCCGGCGGGTC
TTGAATGTGTTGGGTAACACGTTGGAAATTGACTACTGTCCACTCCTTTT
AGACTTGGTTCCTCTCTTAATGGTGATCATGGAGACTTGCGAGTCCTCTT
CAGTGCCGGCCGGCTCTGCCGCGGCCTTGCGCGCTGAGGCAGTGGTGTAC
GCAGTGGTGCGCAACATGCATCTGCATCGTCCTTTTTATTTTGGTACGGG
CCATCATCAATTTCTTGCGACACTGGCTGCGTTTCGCGACTACATGCGCA
GGTACTTTCCTGAAACAGCAGCGTGCATGGCGGCAGTGGGGGCTGATACG
GAGGACTGGCTCGGCGTTATCTTTTATAGATGCCTAGTGCCTTTGGTTGC
TCATCGGGATTTGCTACGCCTTCTCGAACTTTTTTTGGAGGACGGTGTGT
GTTTCTTTTTCAGGTTTACCTTATGTTTGTTCAAAGAGATGAAGTGGAGG
CTCAAAAGCATGGAGCTGGAGAGAGCGGCTTTATGGTGGGATCAGCTTGC
TGATATTACTTTTAGCATTGACTTTGACATCGACCAAGGACTTGGTACAG
TATTGGCTCAATATGGGACGATGGTCAAGCGGAGCAACCTTGATCGTCTG
CTTGCCCTCCGGATGAGTGACCCCATCGAACGAGAGCTGATCGTGAAACA
AGACATCCAACCCTTACGAATGCATGGCCTTGGTCTAGTAGCGGATGTGA
ATGGCAGCACCAGCATACTGCACAACAAGCGCACCTATCTCAAGCTCCTA
GCCAGTTTTCTTCCCCTCCACCAACGCCAACGCAAGCTGAGCATGCTCTT
CTCCAGTGACCGGCACGGGCGTAGCCTCGACTCATTGTATCGCATGTGTG
GAAATAAGCACCCATGCATCCTCATTATTGAAGAATACAAGCACGGACAT
GTCATTGGTGCTTACTGTCCTGATCCCATCAATCCTGGCAACGCGGTAAG
CGGGACAGGCGTTGCCTTTCTTTTTCGGTTGACAAGACCAGCGGTGCGGT
ACAGCTGGGCAAGAGATGCCACGCAGACGGTGGAGTCGGACATGTTCCAA
TTGGCAACGAAAAAATTCTTTGCAGTAGGCATGAGCAATGATACGGACCA
TCCTGGGTTGAAAGTGGATGCAGATTTGGAGACGGGAAGTAGTCACTATT
CCCGGACATTCGCGAATTTGCCTTTGTGTGGCCGGGGACAGGAGAAATTT
GGAATTCGACATGTGGAGGTCCACACCATTGTGACGCAGCCTAATGAGAC
AGATTAAGAGAAAGGGAGTCAGAGAAAGTGTGTATAGATGTATGTGGATG
TACATAAACCGCCCAGTCAGATGGATTAGGGGAGGAGGGAAGAAGAGAGT
GAGGAGACAGGTGTCTTCGTACACGCAGAGGTCAAGAAATAAAGCAGATA
CAAATCAAAAATGGAGTGTTAAAGAACAAAGAGAAAAAACAACATCAACA

protein sequence of jgi.p|Nanoce1779_2|574823

>mRNA_967-protein ID=mRNA_967-protein|Name=jgi.p|Nanoce1779_2|574823|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MPTLSPALVSPRSSVAGRQTTDAGSPSLPTPSTVSPDKTALRWLETSATR
PKLYHAPERLGAGHYHHAHHEILTPDHAQRQYTLIMQDLSKKDPEWLDDL
PLFGAPAASFHDHPLTREQEAASRRVLNVLGNTLEIDYCPLLLDLVPLLM
VIMETCESSSVPAGSAAALRAEAVVYAVVRNMHLHRPFYFGTGHHQFLAT
LAAFRDYMRRYFPETAACMAAVGADTEDWLGVIFYRCLVPLVAHRDLLRL
LELFLEDGVCFFFRFTLCLFKEMKWRLKSMELERAALWWDQLADITFSID
FDIDQGLGTVLAQYGTMVKRSNLDRLLALRMSDPIERELIVKQDIQPLRM
HGLGLVADVNGSTSILHNKRTYLKLLASFLPLHQRQRKLSMLFSSDRHGR
SLDSLYRMCGNKHPCILIIEEYKHGHVIGAYCPDPINPGNAVSGTGVAFL
FRLTRPAVRYSWARDATQTVESDMFQLATKKFFAVGMSNDTDHPGLKVDA
DLETGSSHYSRTFANLPLCGRGQEKFGIRHVEVHTIVTQPNETD*

mRNA from alignment at scaffold_2:880618..882467+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_967 ID=mRNA_967|Name=jgi.p|Nanoce1779_2|574823|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp|location=Sequence derived from alignment at scaffold_2:880618..882467+ (Nannochloropsis oceanica)
ACAGCACGACGCAAAGGGCAATATGCCAACCTTGAGCCCAGCGCTGGTAT
CCCCACGGAGCTCTGTCGCCGGCAGGCAAACCACAGACGCAGGCTCCCCT
TCTTTACCCACCCCTTCCACTGTGTCGCCCGACAAGACGGCGTTGCGGTG
GCTGGAGACCAGTGCCACACGCCCCAAGCTCTACCACGCACCGGAGCGAC
TGGGTGCGGGCCATTATCATCATGCACACCACGAGATTCTAACGCCCGAC
CACGCTCAGCGGCAATACACGCTCATTATGCAGGACTTGAGTAAGAAGGA
TCCAGAATGGCTGGATGACCTGCCGCTTTTTGGTGCGCCCGCTGCCTCGT
TTCACGACCATCCCTTGACGCGGGAGCAGGAAGCTGCAAGCCGGCGGGTC
TTGAATGTGTTGGGTAACACGTTGGAAATTGACTACTGTCCACTCCTTTT
AGACTTGGTTCCTCTCTTAATGGTGATCATGGAGACTTGCGAGTCCTCTT
CAGTGCCGGCCGGCTCTGCCGCGGCCTTGCGCGCTGAGGCAGTGGTGTAC
GCAGTGGTGCGCAACATGCATCTGCATCGTCCTTTTTATTTTGGTACGGG
CCATCATCAATTTCTTGCGACACTGGCTGCGTTTCGCGACTACATGCGCA
GGTACTTTCCTGAAACAGCAGCGTGCATGGCGGCAGTGGGGGCTGATACG
GAGGACTGGCTCGGCGTTATCTTTTATAGATGCCTAGTGCCTTTGGTTGC
TCATCGGGATTTGCTACGCCTTCTCGAACTTTTTTTGGAGGACGGTGTGT
GTTTCTTTTTCAGGTTTACCTTATGTTTGTTCAAAGAGATGAAGTGGAGG
CTCAAAAGCATGGAGCTGGAGAGAGCGGCTTTATGGTGGGATCAGCTTGC
TGATATTACTTTTAGCATTGACTTTGACATCGACCAAGGACTTGGTACAG
TATTGGCTCAATATGGGACGATGGTCAAGCGGAGCAACCTTGATCGTCTG
CTTGCCCTCCGGATGAGTGACCCCATCGAACGAGAGCTGATCGTGAAACA
AGACATCCAACCCTTACGAATGCATGGCCTTGGTCTAGTAGCGGATGTGA
ATGGCAGCACCAGCATACTGCACAACAAGCGCACCTATCTCAAGCTCCTA
GCCAGTTTTCTTCCCCTCCACCAACGCCAACGCAAGCTGAGCATGCTCTT
CTCCAGTGACCGGCACGGGCGTAGCCTCGACTCATTGTATCGCATGTGTG
GAAATAAGCACCCATGCATCCTCATTATTGAAGAATACAAGCACGGACAT
GTCATTGGTGCTTACTGTCCTGATCCCATCAATCCTGGCAACGCGGTAAG
CGGGACAGGCGTTGCCTTTCTTTTTCGGTTGACAAGACCAGCGGTGCGGT
ACAGCTGGGCAAGAGATGCCACGCAGACGGTGGAGTCGGACATGTTCCAA
TTGGCAACGAAAAAATTCTTTGCAGTAGGCATGAGCAATGATACGGACCA
TCCTGGGTTGAAAGTGGATGCAGATTTGGAGACGGGAAGTAGTCACTATT
CCCGGACATTCGCGAATTTGCCTTTGTGTGGCCGGGGACAGGAGAAATTT
GGAATTCGACATGTGGAGGTCCACACCATTGTGACGCAGCCTAATGAGAC
AGATTAAGAGAAAGGGAGTCAGAGAAAGTGTGTATAGATGTATGTGGATG
TACATAAACCGCCCAGTCAGATGGATTAGGGGAGGAGGGAAGAAGAGAGT
GAGGAGACAGGTGTCTTCGTACACGCAGAGGTCAAGAAATAAAGCAGATA
CAAATCAAAAATGGAGTGTTAAAGAACAAAGAGAAAAAACAACATCAACA

Coding sequence (CDS) from alignment at scaffold_2:880618..882467+

>mRNA_967 ID=mRNA_967|Name=jgi.p|Nanoce1779_2|574823|organism=Nannochloropsis oceanica|type=CDS|length=1635bp|location=Sequence derived from alignment at scaffold_2:880618..882467+ (Nannochloropsis oceanica)
ATGCCAACCTTGAGCCCAGCGCTGGTATCCCCACGGAGCTCTGTCGCCGG
CAGGCAAACCACAGACGCAGGCTCCCCTTCTTTACCCACCCCTTCCACTG
TGTCGCCCGACAAGACGGCGTTGCGGTGGCTGGAGACCAGTGCCACACGC
CCCAAGCTCTACCACGCACCGGAGCGACTGGGTGCGGGCCATTATCATCA
TGCACACCACGAGATTCTAACGCCCGACCACGCTCAGCGGCAATACACGC
TCATTATGCAGGACTTGAGTAAGAAGGATCCAGAATGGCTGGATGACCTG
CCGCTTTTTGGTGCGCCCGCTGCCTCGTTTCACGACCATCCCTTGACGCG
GGAGCAGGAAGCTGCAAGCCGGCGGGTCTTGAATGTGTTGGGTAACACGT
TGGAAATTGACTACTGTCCACTCCTTTTAGACTTGGTTCCTCTCTTAATG
GTGATCATGGAGACTTGCGAGTCCTCTTCAGTGCCGGCCGGCTCTGCCGC
GGCCTTGCGCGCTGAGGCAGTGGTGTACGCAGTGGTGCGCAACATGCATC
TGCATCGTCCTTTTTATTTTGGTACGGGCCATCATCAATTTCTTGCGACA
CTGGCTGCGTTTCGCGACTACATGCGCAGGTACTTTCCTGAAACAGCAGC
GTGCATGGCGGCAGTGGGGGCTGATACGGAGGACTGGCTCGGCGTTATCT
TTTATAGATGCCTAGTGCCTTTGGTTGCTCATCGGGATTTGCTACGCCTT
CTCGAACTTTTTTTGGAGGACGGTGTGTGTTTCTTTTTCAGGTTTACCTT
ATGTTTGTTCAAAGAGATGAAGTGGAGGCTCAAAAGCATGGAGCTGGAGA
GAGCGGCTTTATGGTGGGATCAGCTTGCTGATATTACTTTTAGCATTGAC
TTTGACATCGACCAAGGACTTGGTACAGTATTGGCTCAATATGGGACGAT
GGTCAAGCGGAGCAACCTTGATCGTCTGCTTGCCCTCCGGATGAGTGACC
CCATCGAACGAGAGCTGATCGTGAAACAAGACATCCAACCCTTACGAATG
CATGGCCTTGGTCTAGTAGCGGATGTGAATGGCAGCACCAGCATACTGCA
CAACAAGCGCACCTATCTCAAGCTCCTAGCCAGTTTTCTTCCCCTCCACC
AACGCCAACGCAAGCTGAGCATGCTCTTCTCCAGTGACCGGCACGGGCGT
AGCCTCGACTCATTGTATCGCATGTGTGGAAATAAGCACCCATGCATCCT
CATTATTGAAGAATACAAGCACGGACATGTCATTGGTGCTTACTGTCCTG
ATCCCATCAATCCTGGCAACGCGGTAAGCGGGACAGGCGTTGCCTTTCTT
TTTCGGTTGACAAGACCAGCGGTGCGGTACAGCTGGGCAAGAGATGCCAC
GCAGACGGTGGAGTCGGACATGTTCCAATTGGCAACGAAAAAATTCTTTG
CAGTAGGCATGAGCAATGATACGGACCATCCTGGGTTGAAAGTGGATGCA
GATTTGGAGACGGGAAGTAGTCACTATTCCCGGACATTCGCGAATTTGCC
TTTGTGTGGCCGGGGACAGGAGAAATTTGGAATTCGACATGTGGAGGTCC
ACACCATTGTGACGCAGCCTAATGAGACAGATTAA

Synonyms

Publications