jgi.p|Nanoce1779_2|607248, mRNA_9666 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607248
Unique NamemRNA_9666
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length397
Alignment locationscaffold_38:32973..33369 +

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Properties
Property NameValue
TranscriptId607334
TrackFilteredModels2
ProteinId607248
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:32973..33369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607248gene_9666Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607248mRNA_9666-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9666CDS_9666Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9666 ID=mRNA_9666|Name=jgi.p|Nanoce1779_2|607248|organism=Nannochloropsis oceanica|type=mRNA|length=397bp
GATCTACTGTATTGTTGCATTCTTTGCCAAGTGGGATGCATCTTGATGCA
TCATCATCATCATCATCATCACCGCTCCCCTTTGCAACACAGCTCAACGC
CCTTCTCCTACTCTCCCACCTGGGCGGAGCCAGGAATGAAGGTCAAGCCG
ACGAGAACGGCCATCTTAGTGGTAATGAACAAGACGATTATGAGGCGCAG
CATTTGGGTCGCGGTCACAACCAAGTCGAACGCGAAGCCGACCGACAGGG
TCGTACTTACGGACTATACAAAGGGTTATGTACGTTTTTTGCTCTTTTTA
CGTTTTTGGGGTTTTAATCACCATTACGAGCGTTGCCACCGACATGATGG
CATCTTCTTCTATTATATTTTGAGCACCAAAATAAGACCGCCCCGCA
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protein sequence of jgi.p|Nanoce1779_2|607248

>mRNA_9666-protein ID=mRNA_9666-protein|Name=jgi.p|Nanoce1779_2|607248|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MHLDASSSSSSSPLPFATQLNALLLLSHLGGARNEGQADENGHLSGNEQD
DYEAQHLGRGHNQVEREADRQGRTYGLYKGLCTFFALFTFLGF*
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mRNA from alignment at scaffold_38:32973..33369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9666 ID=mRNA_9666|Name=jgi.p|Nanoce1779_2|607248|organism=Nannochloropsis oceanica|type=mRNA|length=397bp|location=Sequence derived from alignment at scaffold_38:32973..33369+ (Nannochloropsis oceanica)
GATCTACTGTATTGTTGCATTCTTTGCCAAGTGGGATGCATCTTGATGCA
TCATCATCATCATCATCATCACCGCTCCCCTTTGCAACACAGCTCAACGC
CCTTCTCCTACTCTCCCACCTGGGCGGAGCCAGGAATGAAGGTCAAGCCG
ACGAGAACGGCCATCTTAGTGGTAATGAACAAGACGATTATGAGGCGCAG
CATTTGGGTCGCGGTCACAACCAAGTCGAACGCGAAGCCGACCGACAGGG
TCGTACTTACGGACTATACAAAGGGTTATGTACGTTTTTTGCTCTTTTTA
CGTTTTTGGGGTTTTAATCACCATTACGAGCGTTGCCACCGACATGATGG
CATCTTCTTCTATTATATTTTGAGCACCAAAATAAGACCGCCCCGCA
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Coding sequence (CDS) from alignment at scaffold_38:32973..33369+

>mRNA_9666 ID=mRNA_9666|Name=jgi.p|Nanoce1779_2|607248|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_38:32973..33369+ (Nannochloropsis oceanica)
ATGCATCTTGATGCATCATCATCATCATCATCATCACCGCTCCCCTTTGC
AACACAGCTCAACGCCCTTCTCCTACTCTCCCACCTGGGCGGAGCCAGGA
ATGAAGGTCAAGCCGACGAGAACGGCCATCTTAGTGGTAATGAACAAGAC
GATTATGAGGCGCAGCATTTGGGTCGCGGTCACAACCAAGTCGAACGCGA
AGCCGACCGACAGGGTCGTACTTACGGACTATACAAAGGGTTATGTACGT
TTTTTGCTCTTTTTACGTTTTTGGGGTTTTAA
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Synonyms
Publications