jgi.p|Nanoce1779_2|607245, mRNA_9665 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607245
Unique Name	mRNA_9665
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1406
Alignment location	scaffold_38:29986..31751 -

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Properties


Property Name	Value
TranscriptId	607331
Track	FilteredModels2
ProteinId	607245

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:29986..31751 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607245	gene_9665	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607245	mRNA_9665-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9665	CDS_9665	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:29986..31751-
coding sequence from alignment at scaffold_38:29986..31751-

mRNA sequence

>mRNA_9665 ID=mRNA_9665|Name=jgi.p|Nanoce1779_2|607245|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
AACAGAGTCCGCCCGAACATCTACTGGTCCAATGGCTTTCGCTACACGCT
ATACTCCTATTGTGGATTTCGGTCTCATCACTGATCAGCGGCAAAATCAG
AATCAAAGCGGCTATCTGCATACAGTAAAACAGCCGCACAATAGTTTGTT
ATCGACTCTCTTAGACAATAAGAAGGCACACGATGGCGCTATGGCCCTGT
GCTGCCTGACAACACGCTCCGCCGGTGCTGACCCACTTCCTGTCTCCACG
CCACCTTACTCCTCGTCTTGGGCCTCTTCTCTCTTAGCAGCGAATCGCAA
ACTTCAGAAGCAGGCGGTTGACAAATCATTGCAACCCTTTCTTACCCAGT
ACCAGCAAAATTTTCGCCCGTTGCCCATTCATCGGTACCCTATCCGTAAG
TATAAGGTGACCAATTTACTCTCCAAGGCCTCGCTCTCTTTTCAAGCACA
GCAGCAGCAGTATCAGTACCAGCAGCACCTCAAAAGAAGCCACCCACCAC
TGCAGCTCCACTACCCTCCACAATGCCAAATGCAGCCGCCGCTTGAGAAG
CAGCATGTGAAGGCGTCGACCAAGTGCTTTTTGATAAACGAGCTCGTGGA
GGCTAAGCGCTACCCACCGATTGCACCGCTGAGTGAAGCCTCCTTGCCTC
TGCAACAGATTCGAAATGGTGTCATGGGTGTTTCGGTGGGACTGCTGCCT
GGCAGATGCTCCAAGATCATGAGAAAGTACCTTCCGAGCGCGGAAAAGCA
GCGACGAGCGTCGAAAGAGGACTTGTCGGGTCTAACTGCGGAGGAGAGAG
TACAGCGACGCAAGATACGTGCTCGCATGTACAACCGCATGTCTCGCCAC
CGCCGCAATCAGCTGCATGGTGAGCTGCGCAGCGACGTGAGTCGCATGCT
GATCTACAAGAATATTGTCGATGGTGCGCCAGACATGATATGTGTCATTT
CCCCCGACATTCAGAGCCGGGTGCTATACATCAACAAGGCCGCTCGATGT
GTCCTCCATACTGACCCCGCGCAGCTGGTGGGGTCCAGCTTCTGGGACAT
CGTCCACACGGAAGATAAAATGGCTCTATTCAGGGCTCTCACCACCGTCA
CTATATTCAAGTCGGCCGGAAAAGTGGAAAGGCTACGCTGTCGTGTCGTC
ACCAACAACCCCGGTGAATATGTGTCTGTCCGGATGACGCTCGCGAATGG
AATGCAGGGCATTGTCTGCGTTATGTGCCACGGAGATTCTCTGTCTGCCA
TTTCGCGTGTGTTATCTGACGGACGACAGTGTGTCATATAGGATGGTCTC
TTAGAAATGGTATGATGATCTGATAGTGGTTGACCAAACGGGCTAAAGTA
GATATCAGAGTAGAATCGAAAAAGAATCAAATTTAATTTCTTGAGGGAAA
TCGAAA

protein sequence of jgi.p|Nanoce1779_2|607245

>mRNA_9665-protein ID=mRNA_9665-protein|Name=jgi.p|Nanoce1779_2|607245|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MAFATRYTPIVDFGLITDQRQNQNQSGYLHTVKQPHNSLLSTLLDNKKAH
DGAMALCCLTTRSAGADPLPVSTPPYSSSWASSLLAANRKLQKQAVDKSL
QPFLTQYQQNFRPLPIHRYPIRKYKVTNLLSKASLSFQAQQQQYQYQQHL
KRSHPPLQLHYPPQCQMQPPLEKQHVKASTKCFLINELVEAKRYPPIAPL
SEASLPLQQIRNGVMGVSVGLLPGRCSKIMRKYLPSAEKQRRASKEDLSG
LTAEERVQRRKIRARMYNRMSRHRRNQLHGELRSDVSRMLIYKNIVDGAP
DMICVISPDIQSRVLYINKAARCVLHTDPAQLVGSSFWDIVHTEDKMALF
RALTTVTIFKSAGKVERLRCRVVTNNPGEYVSVRMTLANGMQGIVCVMCH
GDSLSAISRVLSDGRQCVI*

mRNA from alignment at scaffold_38:29986..31751-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9665 ID=mRNA_9665|Name=jgi.p|Nanoce1779_2|607245|organism=Nannochloropsis oceanica|type=mRNA|length=1766bp|location=Sequence derived from alignment at scaffold_38:29986..31751- (Nannochloropsis oceanica)
AACAGAGTCCGCCCGAACATCTACTGGTCCAATGGCTTTCGCTACACGCT
ATACTCCTATTGTGGATTTCGGTCTCATCACTGATCAGCGGCAAAATCAG
AATCAAAGCGGCTATCTGCATACAGTAAAACAGCCGCACAATAGTTTGTT
ATCGACTCTCTTAGACAATAAGAAGGCACACGATGGCGCTATGGCCCTGT
GCTGCCTGACAACACGCTCCGCCGGTGCTGACCCACTTCCTGTCTCCACG
CCACCTTACTCCTCGTCTTGGGCCTCTTCTCTCTTAGCAGCGAATCGCAG
TACGTTGCTCGAACTCGATCTGTGCTTAGTACTTCGTAGCTACACTTCTA
TGCTTTCATGTACACATTTCCCCGATTCGCTTGAATCATTATCCCACGCC
TCATACGCTCCCATGCACATGGGCAGACACGCACACAAAGTGCACACAAT
TGTCCACATGCGCACCACTTACGTGTAGCAAGGCTATCCATAGACACGTG
TACTCATGTACTCACTTACACACATACCTTCTCCCCCCCTGTACGCAACC
TTAGAACTTCAGAAGCAGGCGGTTGACAAATCATTGCAACCCTTTCTTAC
CCAGTACCAGCAAAATTTTCGCCCGTTGCCCATTCATCGGTACCCTATCC
GTAAGTATAAGGTGACCAATTTACTCTCCAAGGCCTCGCTCTCTTTTCAA
GCACAGCAGCAGCAGTATCAGTACCAGCAGCACCTCAAAAGAAGCCACCC
ACCACTGCAGCTCCACTACCCTCCACAATGCCAAATGCAGCCGCCGCTTG
AGAAGCAGCATGTGAAGGCGTCGACCAAGTGCTTTTTGATAAACGAGCTC
GTGGAGGCTAAGCGCTACCCACCGATTGCACCGCTGAGTGAAGCCTCCTT
GCCTCTGCAACAGATTCGAAATGGTGTCATGGGTGTTTCGGTGGGACTGC
TGCCTGGCAGATGCTCCAAGATCATGAGAAAGTACCTTCCGGTAAGAGAC
ATGAGAGAGATATGCTTTGCTTTTGCATGTCTGATATAACCTCATATGGC
AACTGACTTTTCTTCTCTTCATTCACTCGTTCTCCCCGTACAACAGAGCG
CGGAAAAGCAGCGACGAGCGTCGAAAGAGGACTTGTCGGGTCTAACTGCG
GAGGAGAGAGTACAGCGACGCAAGATACGTGCTCGCATGTACAACCGCAT
GTCTCGCCACCGCCGCAATCAGCTGCATGGTGAGCTGCGCAGCGACGTGA
GTCGCATGCTGATCTACAAGAATATTGTCGATGGTGCGCCAGACATGATA
TGTGTCATTTCCCCCGACATTCAGAGCCGGGTGCTATACATCAACAAGGC
CGCTCGATGTGTCCTCCATACTGACCCCGCGCAGCTGGTGGGGTCCAGCT
TCTGGGACATCGTCCACACGGAAGATAAAATGGCTCTATTCAGGGCTCTC
ACCACCGTCACTATATTCAAGTCGGCCGGAAAAGTGGAAAGGCTACGCTG
TCGTGTCGTCACCAACAACCCCGGTGAATATGTGTCTGTCCGGATGACGC
TCGCGAATGGAATGCAGGGCATTGTCTGCGTTATGTGCCACGGAGATTCT
CTGTCTGCCATTTCGCGTGTGTTATCTGACGGACGACAGTGTGTCATATA
GGATGGTCTCTTAGAAATGGTATGATGATCTGATAGTGGTTGACCAAACG
GGCTAAAGTAGATATCAGAGTAGAATCGAAAAAGAATCAAATTTAATTTC
TTGAGGGAAATCGAAA

Coding sequence (CDS) from alignment at scaffold_38:29986..31751-

>mRNA_9665 ID=mRNA_9665|Name=jgi.p|Nanoce1779_2|607245|organism=Nannochloropsis oceanica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_38:29986..31751- (Nannochloropsis oceanica)
AGCGCGGAAAAGCAGCGACGAGCGTCGAAAGAGGACTTGTCGGGTCTAAC
TGCGGAGGAGAGAGTACAGCGACGCAAGATACGTGCTCGCATGTACAACC
GCATGTCTCGCCACCGCCGCAATCAGCTGCATGGTGAGCTGCGCAGCGAC
GTGAGTCGCATGCTGATCTACAAGAATATTGTCGATGGTGCGCCAGACAT
GATATGTGTCATTTCCCCCGACATTCAGAGCCGGGTGCTATACATCAACA
AGGCCGCTCGATGTGTCCTCCATACTGACCCCGCGCAGCTGGTGGGGTCC
AGCTTCTGGGACATCGTCCACACGGAAGATAAAATGGCTCTATTCAGGGC
TCTCACCACCGTCACTATATTCAAGTCGGCCGGAAAAGTGGAAAGGCTAC
GCTGTCGTGTCGTCACCAACAACCCCGGTGAATATGTGTCTGTCCGGATG
ACGCTCGCGAATGGAATGCAGGGCATTGTCTGCGTTATGTGCCACGGAGA
TTCTCTGTCTGCCATTTCGCGTGTGTTATCTGACGGACGACAGTGTGTCA
TATAGAACTTCAGAAGCAGGCGGTTGACAAATCATTGCAACCCTTTCTTA
CCCAGTACCAGCAAAATTTTCGCCCGTTGCCCATTCATCGGTACCCTATC
CGTAAGTATAAGGTGACCAATTTACTCTCCAAGGCCTCGCTCTCTTTTCA
AGCACAGCAGCAGCAGTATCAGTACCAGCAGCACCTCAAAAGAAGCCACC
CACCACTGCAGCTCCACTACCCTCCACAATGCCAAATGCAGCCGCCGCTT
GAGAAGCAGCATGTGAAGGCGTCGACCAAGTGCTTTTTGATAAACGAGCT
CGTGGAGGCTAAGCGCTACCCACCGATTGCACCGCTGAGTGAAGCCTCCT
TGCCTCTGCAACAGATTCGAAATGGTGTCATGGGTGTTTCGGTGGGACTG
CTGCCTGGCAGATGCTCCAAGATCATGAGAAAGTACCTTCCGATGGCTTT
CGCTACACGCTATACTCCTATTGTGGATTTCGGTCTCATCACTGATCAGC
GGCAAAATCAGAATCAAAGCGGCTATCTGCATACAGTAAAACAGCCGCAC
AATAGTTTGTTATCGACTCTCTTAGACAATAAGAAGGCACACGATGGCGC
TATGGCCCTGTGCTGCCTGACAACACGCTCCGCCGGTGCTGACCCACTTC
CTGTCTCCACGCCACCTTACTCCTCGTCTTGGGCCTCTTCTCTCTTAGCA
GCGAATCGCAAGCGCGGAAAAGCAGCGACGAGCGTCGAAAGAGGACTTGT
CGGGTCTAACTGCGGAGGAGAGAGTACAGCGACGCAAGATACGTGCTCGC
ATGTACAACCGCATGTCTCGCCACCGCCGCAATCAGCTGCATGGTGAGCT
GCGCAGCGACGTGAGTCGCATGCTGATCTACAAGAATATTGTCGATGGTG
CGCCAGACATGATATGTGTCATTTCCCCCGACATTCAGAGCCGGGTGCTA
TACATCAACAAGGCCGCTCGATGTGTCCTCCATACTGACCCCGCGCAGCT
GGTGGGGTCCAGCTTCTGGGACATCGTCCACACGGAAGATAAAATGGCTC
TATTCAGGGCTCTCACCACCGTCACTATATTCAAGTCGGCCGGAAAAGTG
GAAAGGCTACGCTGTCGTGTCGTCACCAACAACCCCGGTGAATATGTGTC
TGTCCGGATGACGCTCGCGAATGGAATGCAGGGCATTGTCTGCGTTATGT
GCCACGGAGATTCTCTGTCTGCCATTTCGCGTGTGTTATCTGACGGACGA
CAGTGTGTCATATAGAACTTCAGAAGCAGGCGGTTGACAAATCATTGCAA
CCCTTTCTTACCCAGTACCAGCAAAATTTTCGCCCGTTGCCCATTCATCG
GTACCCTATCCGTAAGTATAAGGTGACCAATTTACTCTCCAAGGCCTCGC
TCTCTTTTCAAGCACAGCAGCAGCAGTATCAGTACCAGCAGCACCTCAAA
AGAAGCCACCCACCACTGCAGCTCCACTACCCTCCACAATGCCAAATGCA
GCCGCCGCTTGAGAAGCAGCATGTGAAGGCGTCGACCAAGTGCTTTTTGA
TAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCACCGCTGAGT
GAAGCCTCCTTGCCTCTGCAACAGATTCGAAATGGTGTCATGGGTGTTTC
GGTGGGACTGCTGCCTGGCAGATGCTCCAAGATCATGAGAAAGTACCTTC
CGATGGCTTTCGCTACACGCTATACTCCTATTGTGGATTTCGGTCTCATC
ACTGATCAGCGGCAAAATCAGAATCAAAGCGGCTATCTGCATACAGTAAA
ACAGCCGCACAATAGTTTGTTATCGACTCTCTTAGACAATAAGAAGGCAC
ACGATGGCGCTATGGCCCTGTGCTGCCTGACAACACGCTCCGCCGGTGCT
GACCCACTTCCTGTCTCCACGCCACCTTACTCCTCGTCTTGGGCCTCTTC
TCTCTTAGCAGCGAATCGCAAGCGCGGAAAAGCAGCGACGAGCGTCGAAA
GAGGACTTGTCGGGTCTAACTGCGGAGGAGAGAGTACAGCGACGCAAGAT
ACGTGCTCGCATGTACAACCGCATGTCTCGCCACCGCCGCAATCAGCTGC
ATGGTGAGCTGCGCAGCGACGTGAGTCGCATGCTGATCTACAAGAATATT
GTCGATGGTGCGCCAGACATGATATGTGTCATTTCCCCCGACATTCAGAG
CCGGGTGCTATACATCAACAAGGCCGCTCGATGTGTCCTCCATACTGACC
CCGCGCAGCTGGTGGGGTCCAGCTTCTGGGACATCGTCCACACGGAAGAT
AAAATGGCTCTATTCAGGGCTCTCACCACCGTCACTATATTCAAGTCGGC
CGGAAAAGTGGAAAGGCTACGCTGTCGTGTCGTCACCAACAACCCCGGTG
AATATGTGTCTGTCCGGATGACGCTCGCGAATGGAATGCAGGGCATTGTC
TGCGTTATGTGCCACGGAGATTCTCTGTCTGCCATTTCGCGTGTGTTATC
TGACGGACGACAGTGTGTCATATAGAACTTCAGAAGCAGGCGGTTGACAA
ATCATTGCAACCCTTTCTTACCCAGTACCAGCAAAATTTTCGCCCGTTGC
CCATTCATCGGTACCCTATCCGTAAGTATAAGGTGACCAATTTACTCTCC
AAGGCCTCGCTCTCTTTTCAAGCACAGCAGCAGCAGTATCAGTACCAGCA
GCACCTCAAAAGAAGCCACCCACCACTGCAGCTCCACTACCCTCCACAAT
GCCAAATGCAGCCGCCGCTTGAGAAGCAGCATGTGAAGGCGTCGACCAAG
TGCTTTTTGATAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGC
ACCGCTGAGTGAAGCCTCCTTGCCTCTGCAACAGATTCGAAATGGTGTCA
TGGGTGTTTCGGTGGGACTGCTGCCTGGCAGATGCTCCAAGATCATGAGA
AAGTACCTTCCGATGGCTTTCGCTACACGCTATACTCCTATTGTGGATTT
CGGTCTCATCACTGATCAGCGGCAAAATCAGAATCAAAGCGGCTATCTGC
ATACAGTAAAACAGCCGCACAATAGTTTGTTATCGACTCTCTTAGACAAT
AAGAAGGCACACGATGGCGCTATGGCCCTGTGCTGCCTGACAACACGCTC
CGCCGGTGCTGACCCACTTCCTGTCTCCACGCCACCTTACTCCTCGTCTT
GGGCCTCTTCTCTCTTAGCAGCGAATCGCA

Synonyms

Publications