jgi.p|Nanoce1779_2|642661, mRNA_9660 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642661
Unique NamemRNA_9660
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length372
Alignment locationscaffold_38:6708..7186 -

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Properties
Property NameValue
TranscriptId642747
TrackFilteredModels2
ProteinId642661
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:6708..7186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642661gene_9660Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642661mRNA_9660-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9660CDS_9660Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9660 ID=mRNA_9660|Name=jgi.p|Nanoce1779_2|642661|organism=Nannochloropsis oceanica|type=mRNA|length=372bp
ATGTTGGAGATGAACTGGTGGTCCTCGCGCGTGTTGGGGTCGACCTGGTG
TTGCATCTCAGGAGCCGCAGTGCTGGCAAGCCGCTCGAGCACCCAAGTGA
TGCGGTTGTCGGTCAGCTGCGCGTTCGGCTGCACACACCTCTGGCTCTTC
GCCACGCTCTCGACGGGCTCATCAGTCAGCTGCGCGTTGGGCTGCAAGCC
CTTCGGGATTCAAGCGCCGGCGTTGTCGACCCTGTCGGTCAGTTTTGCGT
TCGACTTCGTTGCGACCACGACCCAACTGTTGCGCATCATCATCGTCTTG
CTAATTACCGCTAAGAAGGCCGTTCTCGTTGTTTTGACCACCATTTGTGG
CTCCGTCCAGGTGGGAGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|642661

>mRNA_9660-protein ID=mRNA_9660-protein|Name=jgi.p|Nanoce1779_2|642661|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MLEMNWWSSRVLGSTWCCISGAAVLASRSSTQVMRLSVSCAFGCTHLWLF
ATLSTGSSVSCALGCKPFGIQAPALSTLSVSFAFDFVATTTQLLRIIIVL
LITAKKAVLVVLTTICGSVQVGE*
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mRNA from alignment at scaffold_38:6708..7186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9660 ID=mRNA_9660|Name=jgi.p|Nanoce1779_2|642661|organism=Nannochloropsis oceanica|type=mRNA|length=479bp|location=Sequence derived from alignment at scaffold_38:6708..7186- (Nannochloropsis oceanica)
ATGTTGGAGATGAACTGGTGGTCCTCGCGCGTGTTGGGGTCGACCTGGTG
TTGCATCTCAGGTGGTGTATCCCGGTAATCTGTTTAGGCTCCCCACCCTT
TTTTGCAACAAATGCTGAAAAGAAAGCCGGCGGGGTTACGATCCCCCGTC
TTATCCTGCCAATTCAAGGAGCCGCAGTGCTGGCAAGCCGCTCGAGCACC
CAAGTGATGCGGTTGTCGGTCAGCTGCGCGTTCGGCTGCACACACCTCTG
GCTCTTCGCCACGCTCTCGACGGGCTCATCAGTCAGCTGCGCGTTGGGCT
GCAAGCCCTTCGGGATTCAAGCGCCGGCGTTGTCGACCCTGTCGGTCAGT
TTTGCGTTCGACTTCGTTGCGACCACGACCCAACTGTTGCGCATCATCAT
CGTCTTGCTAATTACCGCTAAGAAGGCCGTTCTCGTTGTTTTGACCACCA
TTTGTGGCTCCGTCCAGGTGGGAGAGTAG
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Coding sequence (CDS) from alignment at scaffold_38:6708..7186-

>mRNA_9660 ID=mRNA_9660|Name=jgi.p|Nanoce1779_2|642661|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_38:6708..7186- (Nannochloropsis oceanica)
GAGCCGCAGTGCTGGCAAGCCGCTCGAGCACCCAAGTGATGCGGTTGTCG
GTCAGCTGCGCGTTCGGCTGCACACACCTCTGGCTCTTCGCCACGCTCTC
GACGGGCTCATCAGTCAGCTGCGCGTTGGGCTGCAAGCCCTTCGGGATTC
AAGCGCCGGCGTTGTCGACCCTGTCGGTCAGTTTTGCGTTCGACTTCGTT
GCGACCACGACCCAACTGTTGCGCATCATCATCGTCTTGCTAATTACCGC
TAAGAAGGCCGTTCTCGTTGTTTTGACCACCATTTGTGGCTCCGTCCAGG
TGGGAGAGTAGATGTTGGAGATGAACTGGTGGTCCTCGCGCGTGTTGGGG
TCGACCTGGTGTTGCATCTCAGGAGCCGCAGTGCTGGCAAGCCGCTCGAG
CACCCAAGTGATGCGGTTGTCGGTCAGCTGCGCGTTCGGCTGCACACACC
TCTGGCTCTTCGCCACGCTCTCGACGGGCTCATCAGTCAGCTGCGCGTTG
GGCTGCAAGCCCTTCGGGATTCAAGCGCCGGCGTTGTCGACCCTGTCGGT
CAGTTTTGCGTTCGACTTCGTTGCGACCACGACCCAACTGTTGCGCATCA
TCATCGTCTTGCTAATTACCGCTAAGAAGGCCGTTCTCGTTGTTTTGACC
ACCATTTGTGGCTCCGTCCAGGTGGGAGAGTAGATGTTGGAGATGAACTG
GTGGTCCTCGCGCGTGTTGGGGTCGACCTGGTGTTGCATCTCAG
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Synonyms
Publications