jgi.p|Nanoce1779_2|261523, mRNA_9656 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|261523
Unique Name	mRNA_9656
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1143
Alignment location	scaffold_31:244382..246066 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	261609
Track	FilteredModels2
ProteinId	261523

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:244382..246066 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|261523	gene_9656	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|261523	mRNA_9656-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9656	CDS_9656	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:244382..246066+
coding sequence from alignment at scaffold_31:244382..246066+

mRNA sequence

>mRNA_9656 ID=mRNA_9656|Name=jgi.p|Nanoce1779_2|261523|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
GCTTGCAGTCCTGTGTTAAGAACAATCAAGACCTCATCATCAACTTGCGC
GTCGATCGTCGTCTTGCGTCTGAAAACCTGACCCTCACACAGCCTTTGCC
CCCTCACCTCAGATTCTTGTCTACAGCTACAGCAACAAACTAGCCTCTAC
TTGAAGCATGCGTGCGGTGGCACTATTGGTCGCCTTGGCGGCATCATTCC
CAACGGGGAGGGCCTTCGTCCCCTCTCTCCGAGCGCCTGCATCCTCCTCC
CTCCTCCAGACCCCGTCCCGCATCACAACACAGCTCCCTCAAGCGCGGTC
CTTCGTCCCTTCCACGCTGCAGGCTGTGAAGAAGGGCAAGAACGGCAATA
TCGTGGAAAGCAAGAAAGGGTTCGGCAAAGCTAAATTGTTGCTTACTTCG
TCTATACCTACCCTGTGCTTCGCAGTGCCGCATCATCCCACTCCATCTCA
CCCCCCATTCCCATCTCCCTCGGCCCCAACACGTGCAGACTCCTCCCCCT
TGGCCTGGCTCCCCGTCGTGGCTCGCAATGTTTTCTTTACCCTCCTGGCC
CTCTCCCCCCTCGGCGCCTATGAGTCTGCAGATGCCGCACAACGATCGGG
CGGGCGTGTAGGGGGGAGCGGCTTCCGCTCGGCACCGTCCCAAACGAGAA
GGTACTCCGCTCCTCCCTCCCGCTCCTACTCTCGGGGGCCGCAGTCGCGT
GGCTACGTCCAGCCCGTGCCCGTGATGCCCTATGGCGGGTTTGGCTATGG
CTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCGGCTTTGGCG
GAGGCGTGGTGGGCTACCGGGCTGGCATCTCTCCACTGGATGTTATAATT
CTCGGCGGCATCGCGTACACTGCCTTTAACATTATCAAGAACCAGATGGG
CGGCAGTCAGTGGGAGGGCCTCGACGAGTCGTCTGCTCCCTCCTCGCTCG
GGAACGGCGTGACGGTGCTCAAGATCCAGGTGGGGAAGAGGGAGAGAGAG
GAGGAAGGATAGGGATAAGGGAAGGTTCCGAGAGAGAGGGAAAAAAGGCT
TACCTTCATGCCTTGAAAAAAAGGCTTACCTTCATGCCTTGATAGCCATC
TTTGTTACCCCCCTCACCATTCCTTCCCTCCCTCCCTCCCTCC

protein sequence of jgi.p|Nanoce1779_2|261523

>mRNA_9656-protein ID=mRNA_9656-protein|Name=jgi.p|Nanoce1779_2|261523|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MRAVALLVALAASFPTGRAFVPSLRAPASSSLLQTPSRITTQLPQARSFV
PSTLQAVKKGKNGNIVESKKGFGKAKLLLTSSIPTLCFAVPHHPTPSHPP
FPSPSAPTRADSSPLAWLPVVARNVFFTLLALSPLGAYESADAAQRSGGR
VGGSGFRSAPSQTRRYSAPPSRSYSRGPQSRGYVQPVPVMPYGGFGYGFS
PFSPFSPFSPFGFGGGVVGYRAGISPLDVIILGGIAYTAFNIIKNQMGGS
QWEGLDESSAPSSLGNGVTVLKIQVGKREREEEG*

mRNA from alignment at scaffold_31:244382..246066+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9656 ID=mRNA_9656|Name=jgi.p|Nanoce1779_2|261523|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp|location=Sequence derived from alignment at scaffold_31:244382..246066+ (Nannochloropsis oceanica)
GCTTGCAGTCCTGTGTTAAGAACAATCAAGACCTCATCATCAACTTGCGC
GTCGATCGTCGTCTTGCGTCTGAAAACCTGACCCTCACACAGCCTTTGCC
CCCTCACCTCAGATTCTTGTCTACAGCTACAGCAACAAACTAGCCTCTAC
TTGAAGCATGCGTGCGGTGGCACTATTGGTCGCCTTGGCGGCATCATTCC
CAACGGGGAGGGCCTTCGTCCCCTCTCTCCGAGCGCCTGCATCCTCCTCC
CTCCTCCAGACCCCGTCCCGCATCACAACACAGCTCCCTCAAGCGCGGTC
CTTCGTCCCTTCCACGCTGCAGGCTGTGAAGAAGGGCAAGAACGGCAATA
TCGTGGAAAGCAAGAAAGGTACGTGTGCCGTGCACGGTGTAATAAAGTGG
TTCCATTTTGACTTATCACCCCTCCCCTCCCCGCCTTCCTTTCAACTGTG
ATCCGCCCTTTCCCAGGGTTCGGCAAAGCTAAATTGTTGCTTACTTCGTC
TATACCTACCCTGTGCTTCGCAGTGCCGCATCATCCCACTCCATCTCACC
CCCCATTCCCATCTCCCTCGGCCCCAACACGTGCAGACTCCTCCCCCTTG
GCCTGGCTCCCCGTCGTGGCTCGCAATGTTTTCTTTACCCTCCTGGCCCT
CTCCCCCCTCGGCGCCTATGAGTCTGCAGATGCCGCACAACGATCGGGCG
GGCGTGTAGGGGGGAGCGGCTTCCGCTCGGCACCGTCCCAAACGAGAAGG
TGAGTGCAGGAGAGGGTGGGAGGGAAGGAGGAAGGCTTCATAAGTTAACT
ACGAGAGGCTTTCTAGACAGAGGATAATCCCAAACATTCTTTCTCTTTTA
TAGTATCTTCCTATCCATATACACAACCGCTCCCGTCCCTTCCCCCCCAC
TCCCTCCCTAGGTACTCCGCTCCTCCCTCCCGCTCCTACTCTCGGGGGCC
GCAGTCGCGTGGCTACGTCCAGCCCGTGCCCGTGATGCCCTATGGCGGGT
TTGGCTATGGCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTC
GGCTTTGTAAGTAGGGGGGGAGTGGGGAAGGAGGGGAGGGAGGGAGGGGA
GACATGGCGTCTCCTCCTACCTTGCTGTTTGATGCGAGCACCCTGTCACT
CCTCCTCCCCTTTCTCCTGCCTTCACTTTCGTATTATTCTCTGCGATAGG
GCGGAGGCGTGGTGGGCTACCGGGCTGGCATCTCTCCACTGGATGTTATA
ATTCTCGGCGGCATCGCGTACACTGGTGAGAAAGGCCCCGATAAACCTTC
CTCCCTCCTGTCCTCACTCCCTCCCCCCCTCCCTCGCTCCCTTCCTCCCT
TTACTCTCCTTGACTCTCTCCTTATTCTTCTCTTTCCCTCCCTTCTCCCC
CTCCTTTCTCGCAGCCTTTAACATTATCAAGAACCAGATGGGCGGCAGTC
AGTGGGAGGGCCTCGACGAGTCGTCTGCTCCCTCCTCGCTCGGGAACGGC
GTGACGGTGCTCAAGATCCAGGTGGGGAAGAGGGAGAGAGAGGAGGAAGG
ATAGGGATAAGGGAAGGTTCCGAGAGAGAGGGAAAAAAGGCTTACCTTCA
TGCCTTGAAAAAAAGGCTTACCTTCATGCCTTGATAGCCATCTTTGTTAC
CCCCCTCACCATTCCTTCCCTCCCTCCCTCCCTCC

Coding sequence (CDS) from alignment at scaffold_31:244382..246066+

>mRNA_9656 ID=mRNA_9656|Name=jgi.p|Nanoce1779_2|261523|organism=Nannochloropsis oceanica|type=CDS|length=4275bp|location=Sequence derived from alignment at scaffold_31:244382..246066+ (Nannochloropsis oceanica)
ATGCGTGCGGTGGCACTATTGGTCGCCTTGGCGGCATCATTCCCAACGGG
GAGGGCCTTCGTCCCCTCTCTCCGAGCGCCTGCATCCTCCTCCCTCCTCC
AGACCCCGTCCCGCATCACAACACAGCTCCCTCAAGCGCGGTCCTTCGTC
CCTTCCACGCTGCAGGCTGTGAAGAAGGGCAAGAACGGCAATATCGTGGA
AAGCAAGAAAGGGTTCGGCAAAGCTAAATTGTTGCTTACTTCGTCTATAC
CTACCCTGTGCTTCGCAGTGCCGCATCATCCCACTCCATCTCACCCCCCA
TTCCCATCTCCCTCGGCCCCAACACGTGCAGACTCCTCCCCCTTGGCCTG
GCTCCCCGTCGTGGCTCGCAATGTTTTCTTTACCCTCCTGGCCCTCTCCC
CCCTCGGCGCCTATGAGTCTGCAGATGCCGCACAACGATCGGGCGGGCGT
GTAGGGGGGAGCGGCTTCCGCTCGGCACCGTCCCAAACGAGAAGGTACTC
CGCTCCTCCCTCCCGCTCCTACTCTCGGGGGCCGCAGTCGCGTGGCTACG
TCCAGCCCGTGCCCGTGATGCCCTATGGCGGGTTTGGCTATGGCTTCTCG
CCCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCGGCTTTGGCGGAGGCGT
GGTGGGCTACCGGGCTGGCATCTCTCCACTGGATGTTATAATTCTCGGCG
GCATCGCGTACACTGCCTTTAACATTATCAAGAACCAGATGGGCGGCAGT
CAGTGGGAGGGCCTCGACGAGTCGTCTGCTCCCTCCTCGCTCGGGAACGG
CGTGACGGTGCTCAAGATCCAGGTGGGGAAGAGGGAGAGAGAGGAGGAAG
GATAGATGCGTGCGGTGGCACTATTGGTCGCCTTGGCGGCATCATTCCCA
ACGGGGAGGGCCTTCGTCCCCTCTCTCCGAGCGCCTGCATCCTCCTCCCT
CCTCCAGACCCCGTCCCGCATCACAACACAGCTCCCTCAAGCGCGGTCCT
TCGTCCCTTCCACGCTGCAGGCTGTGAAGAAGGGCAAGAACGGCAATATC
GTGGAAAGCAAGAAAGGGTTCGGCAAAGCTAAATTGTTGCTTACTTCGTC
TATACCTACCCTGTGCTTCGCAGTGCCGCATCATCCCACTCCATCTCACC
CCCCATTCCCATCTCCCTCGGCCCCAACACGTGCAGACTCCTCCCCCTTG
GCCTGGCTCCCCGTCGTGGCTCGCAATGTTTTCTTTACCCTCCTGGCCCT
CTCCCCCCTCGGCGCCTATGAGTCTGCAGATGCCGCACAACGATCGGGCG
GGCGTGTAGGGGGGAGCGGCTTCCGCTCGGCACCGTCCCAAACGAGAAGG
TACTCCGCTCCTCCCTCCCGCTCCTACTCTCGGGGGCCGCAGTCGCGTGG
CTACGTCCAGCCCGTGCCCGTGATGCCCTATGGCGGGTTTGGCTATGGCT
TCTCGCCCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCGGCTTTGGCGGA
GGCGTGGTGGGCTACCGGGCTGGCATCTCTCCACTGGATGTTATAATTCT
CGGCGGCATCGCGTACACTGCCTTTAACATTATCAAGAACCAGATGGGCG
GCAGTCAGTGGGAGGGCCTCGACGAGTCGTCTGCTCCCTCCTCGCTCGGG
AACGGCGTGACGGTGCTCAAGATCCAGGTGGGGAAGAGGGAGAGAGAGGA
GGAAGGATAGATGCGTGCGGTGGCACTATTGGTCGCCTTGGCGGCATCAT
TCCCAACGGGGAGGGCCTTCGTCCCCTCTCTCCGAGCGCCTGCATCCTCC
TCCCTCCTCCAGACCCCGTCCCGCATCACAACACAGCTCCCTCAAGCGCG
GTCCTTCGTCCCTTCCACGCTGCAGGCTGTGAAGAAGGGCAAGAACGGCA
ATATCGTGGAAAGCAAGAAAGGGTTCGGCAAAGCTAAATTGTTGCTTACT
TCGTCTATACCTACCCTGTGCTTCGCAGTGCCGCATCATCCCACTCCATC
TCACCCCCCATTCCCATCTCCCTCGGCCCCAACACGTGCAGACTCCTCCC
CCTTGGCCTGGCTCCCCGTCGTGGCTCGCAATGTTTTCTTTACCCTCCTG
GCCCTCTCCCCCCTCGGCGCCTATGAGTCTGCAGATGCCGCACAACGATC
GGGCGGGCGTGTAGGGGGGAGCGGCTTCCGCTCGGCACCGTCCCAAACGA
GAAGGTACTCCGCTCCTCCCTCCCGCTCCTACTCTCGGGGGCCGCAGTCG
CGTGGCTACGTCCAGCCCGTGCCCGTGATGCCCTATGGCGGGTTTGGCTA
TGGCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCGGCTTTG
GCGGAGGCGTGGTGGGCTACCGGGCTGGCATCTCTCCACTGGATGTTATA
ATTCTCGGCGGCATCGCGTACACTGCCTTTAACATTATCAAGAACCAGAT
GGGCGGCAGTCAGTGGGAGGGCCTCGACGAGTCGTCTGCTCCCTCCTCGC
TCGGGAACGGCGTGACGGTGCTCAAGATCCAGGTGGGGAAGAGGGAGAGA
GAGGAGGAAGGATAGATGCGTGCGGTGGCACTATTGGTCGCCTTGGCGGC
ATCATTCCCAACGGGGAGGGCCTTCGTCCCCTCTCTCCGAGCGCCTGCAT
CCTCCTCCCTCCTCCAGACCCCGTCCCGCATCACAACACAGCTCCCTCAA
GCGCGGTCCTTCGTCCCTTCCACGCTGCAGGCTGTGAAGAAGGGCAAGAA
CGGCAATATCGTGGAAAGCAAGAAAGGGTTCGGCAAAGCTAAATTGTTGC
TTACTTCGTCTATACCTACCCTGTGCTTCGCAGTGCCGCATCATCCCACT
CCATCTCACCCCCCATTCCCATCTCCCTCGGCCCCAACACGTGCAGACTC
CTCCCCCTTGGCCTGGCTCCCCGTCGTGGCTCGCAATGTTTTCTTTACCC
TCCTGGCCCTCTCCCCCCTCGGCGCCTATGAGTCTGCAGATGCCGCACAA
CGATCGGGCGGGCGTGTAGGGGGGAGCGGCTTCCGCTCGGCACCGTCCCA
AACGAGAAGGTACTCCGCTCCTCCCTCCCGCTCCTACTCTCGGGGGCCGC
AGTCGCGTGGCTACGTCCAGCCCGTGCCCGTGATGCCCTATGGCGGGTTT
GGCTATGGCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCGG
CTTTGGCGGAGGCGTGGTGGGCTACCGGGCTGGCATCTCTCCACTGGATG
TTATAATTCTCGGCGGCATCGCGTACACTGCCTTTAACATTATCAAGAAC
CAGATGGGCGGCAGTCAGTGGGAGGGCCTCGACGAGTCGTCTGCTCCCTC
CTCGCTCGGGAACGGCGTGACGGTGCTCAAGATCCAGGTGGGGAAGAGGG
AGAGAGAGGAGGAAGGATAGATGCGTGCGGTGGCACTATTGGTCGCCTTG
GCGGCATCATTCCCAACGGGGAGGGCCTTCGTCCCCTCTCTCCGAGCGCC
TGCATCCTCCTCCCTCCTCCAGACCCCGTCCCGCATCACAACACAGCTCC
CTCAAGCGCGGTCCTTCGTCCCTTCCACGCTGCAGGCTGTGAAGAAGGGC
AAGAACGGCAATATCGTGGAAAGCAAGAAAGGGTTCGGCAAAGCTAAATT
GTTGCTTACTTCGTCTATACCTACCCTGTGCTTCGCAGTGCCGCATCATC
CCACTCCATCTCACCCCCCATTCCCATCTCCCTCGGCCCCAACACGTGCA
GACTCCTCCCCCTTGGCCTGGCTCCCCGTCGTGGCTCGCAATGTTTTCTT
TACCCTCCTGGCCCTCTCCCCCCTCGGCGCCTATGAGTCTGCAGATGCCG
CACAACGATCGGGCGGGCGTGTAGGGGGGAGCGGCTTCCGCTCGGCACCG
TCCCAAACGAGAAGGTACTCCGCTCCTCCCTCCCGCTCCTACTCTCGGGG
GCCGCAGTCGCGTGGCTACGTCCAGCCCGTGCCCGTGATGCCCTATGGCG
GGTTTGGCTATGGCTTCTCGCCCTTCTCGCCCTTCTCGCCCTTCTCGCCC
TTCGGCTTTGGCGGAGGCGTGGTGGGCTACCGGGCTGGCATCTCTCCACT
GGATGTTATAATTCTCGGCGGCATCGCGTACACTGCCTTTAACATTATCA
AGAACCAGATGGGCGGCAGTCAGTGGGAGGGCCTCGACGAGTCGTCTGCT
CCCTCCTCGCTCGGGAACGGCGTGACGGTGCTCAAGATCCAGGTGGGGAA
GAGGGAGAGAGAGGAGGAAGGATAG

Synonyms

Publications