jgi.p|Nanoce1779_2|658579, mRNA_9654 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|658579
Unique NamemRNA_9654
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1293
Alignment locationscaffold_31:236537..237829 -

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Properties
Property NameValue
TranscriptId658665
TrackFilteredModels2
ProteinId658579
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:236537..237829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658579gene_9654Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9654CDS_9654Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658579mRNA_9654-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9654 ID=mRNA_9654|Name=jgi.p|Nanoce1779_2|658579|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
ATGGAGTCCGCAGAATATTATGCTCGCAAAGCTTTGGAATTCGGAGGTCA
GGTTACGCCGGTACTGCATATAGCGAGACGCTTGGAGGAAATGGGCGACA
TTGATAAAGCGGCTGATCAATTCAGCTTGGCTTGTAGTGTCTACTTAGCA
TCTCACCCGCTTCCCAAGGACAACCGGGTACAGTTAGAATATGGTGACCA
ACATGTGTTGTGGCCTCACAGCTTTTCGACAGGATATCTCAAGGATCTGC
AGGCTTTTGATGCCATTGTAAATGACAGGAACATCTCTGATGAAACACGA
GATCAGGTGCATTGGGAGATGATTGCTCTGGCGCGGCCTATCTTGCATTG
TGGTGAGGAGCTTTTTCGACGCGGAGGCATTTATGGCGACGGAGAGGAAT
ATTACTATGCGACGCCCTCTATCCTGCCGCATCCAACCAACCCGGAAGAG
GATCATCTCATCATCATCCGACTTCTAAACTATCGCATCGACCCCGTAGG
ACGTTTTTACAAGGATTATTTGCCAAAATATGACACGAGCGGCATCTTGC
GTAGCGCATGCGTGCTCCATGATGGTCGTGATGCAGAACGTGGAGACATC
CTACGCATCATAGACGGGCGCTTTCAGAGGTTGTCATACCGTTTCCTAGG
TACTGAGGACCCTCGATTATTTCGCTCAGAATCAGGGGAGATTCGCGTTT
TTTGGACCAGCTGGGAATTCTCCAAGTACCTTGGTGAAGGGTCACGGATC
ATAAGCGGAGTCCTACACGTCAAAAGTTCTACAATTTACGTGGACCACCT
CTTCCAAAGTCCCTTTGATCGATTTTTGGAGAAAAATTGGGTCGTTTTTC
AAGTCCCTGGGGGCCCTATGAGGATTGTGTATGAGTGGTATCCCTTACGG
GTAGGCACATTTAATTGCAGTGTTGATATTGACAAAGTGCAGTTGGATTT
AACGATAGATACGCCACTGGTTTTTAAGCACGCCCGCGGATCATCAAATG
GATGCTACTACAAGGGCGAGCTCTGGTTCCTCATCCACGGCACTACGTGG
CACAAGGGACCAGGTCCAGTCTACTACCATCGAATAGCTGTGCTAGACCC
CATCACCTTGCATTTGAAGCGGTACACATACCCCTTTAAGCTAGAATCAC
AGAATGGCTCAGTCGAATTCTCATTGGGAATCACTATTGATGCCCAAGAT
CGTCTCTCTATCGCTTATAGCGTGTTTGACTTGACGTCTGTAATTCGGAG
GATTCCAATTTGGAAAGTTGAAACCTTGATGGCAAAGCCCTGA
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protein sequence of jgi.p|Nanoce1779_2|658579

>mRNA_9654-protein ID=mRNA_9654-protein|Name=jgi.p|Nanoce1779_2|658579|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MESAEYYARKALEFGGQVTPVLHIARRLEEMGDIDKAADQFSLACSVYLA
SHPLPKDNRVQLEYGDQHVLWPHSFSTGYLKDLQAFDAIVNDRNISDETR
DQVHWEMIALARPILHCGEELFRRGGIYGDGEEYYYATPSILPHPTNPEE
DHLIIIRLLNYRIDPVGRFYKDYLPKYDTSGILRSACVLHDGRDAERGDI
LRIIDGRFQRLSYRFLGTEDPRLFRSESGEIRVFWTSWEFSKYLGEGSRI
ISGVLHVKSSTIYVDHLFQSPFDRFLEKNWVVFQVPGGPMRIVYEWYPLR
VGTFNCSVDIDKVQLDLTIDTPLVFKHARGSSNGCYYKGELWFLIHGTTW
HKGPGPVYYHRIAVLDPITLHLKRYTYPFKLESQNGSVEFSLGITIDAQD
RLSIAYSVFDLTSVIRRIPIWKVETLMAKP*
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mRNA from alignment at scaffold_31:236537..237829-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9654 ID=mRNA_9654|Name=jgi.p|Nanoce1779_2|658579|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp|location=Sequence derived from alignment at scaffold_31:236537..237829- (Nannochloropsis oceanica)
ATGGAGTCCGCAGAATATTATGCTCGCAAAGCTTTGGAATTCGGAGGTCA
GGTTACGCCGGTACTGCATATAGCGAGACGCTTGGAGGAAATGGGCGACA
TTGATAAAGCGGCTGATCAATTCAGCTTGGCTTGTAGTGTCTACTTAGCA
TCTCACCCGCTTCCCAAGGACAACCGGGTACAGTTAGAATATGGTGACCA
ACATGTGTTGTGGCCTCACAGCTTTTCGACAGGATATCTCAAGGATCTGC
AGGCTTTTGATGCCATTGTAAATGACAGGAACATCTCTGATGAAACACGA
GATCAGGTGCATTGGGAGATGATTGCTCTGGCGCGGCCTATCTTGCATTG
TGGTGAGGAGCTTTTTCGACGCGGAGGCATTTATGGCGACGGAGAGGAAT
ATTACTATGCGACGCCCTCTATCCTGCCGCATCCAACCAACCCGGAAGAG
GATCATCTCATCATCATCCGACTTCTAAACTATCGCATCGACCCCGTAGG
ACGTTTTTACAAGGATTATTTGCCAAAATATGACACGAGCGGCATCTTGC
GTAGCGCATGCGTGCTCCATGATGGTCGTGATGCAGAACGTGGAGACATC
CTACGCATCATAGACGGGCGCTTTCAGAGGTTGTCATACCGTTTCCTAGG
TACTGAGGACCCTCGATTATTTCGCTCAGAATCAGGGGAGATTCGCGTTT
TTTGGACCAGCTGGGAATTCTCCAAGTACCTTGGTGAAGGGTCACGGATC
ATAAGCGGAGTCCTACACGTCAAAAGTTCTACAATTTACGTGGACCACCT
CTTCCAAAGTCCCTTTGATCGATTTTTGGAGAAAAATTGGGTCGTTTTTC
AAGTCCCTGGGGGCCCTATGAGGATTGTGTATGAGTGGTATCCCTTACGG
GTAGGCACATTTAATTGCAGTGTTGATATTGACAAAGTGCAGTTGGATTT
AACGATAGATACGCCACTGGTTTTTAAGCACGCCCGCGGATCATCAAATG
GATGCTACTACAAGGGCGAGCTCTGGTTCCTCATCCACGGCACTACGTGG
CACAAGGGACCAGGTCCAGTCTACTACCATCGAATAGCTGTGCTAGACCC
CATCACCTTGCATTTGAAGCGGTACACATACCCCTTTAAGCTAGAATCAC
AGAATGGCTCAGTCGAATTCTCATTGGGAATCACTATTGATGCCCAAGAT
CGTCTCTCTATCGCTTATAGCGTGTTTGACTTGACGTCTGTAATTCGGAG
GATTCCAATTTGGAAAGTTGAAACCTTGATGGCAAAGCCCTGA
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Coding sequence (CDS) from alignment at scaffold_31:236537..237829-

>mRNA_9654 ID=mRNA_9654|Name=jgi.p|Nanoce1779_2|658579|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at scaffold_31:236537..237829- (Nannochloropsis oceanica)
ATGGAGTCCGCAGAATATTATGCTCGCAAAGCTTTGGAATTCGGAGGTCA
GGTTACGCCGGTACTGCATATAGCGAGACGCTTGGAGGAAATGGGCGACA
TTGATAAAGCGGCTGATCAATTCAGCTTGGCTTGTAGTGTCTACTTAGCA
TCTCACCCGCTTCCCAAGGACAACCGGGTACAGTTAGAATATGGTGACCA
ACATGTGTTGTGGCCTCACAGCTTTTCGACAGGATATCTCAAGGATCTGC
AGGCTTTTGATGCCATTGTAAATGACAGGAACATCTCTGATGAAACACGA
GATCAGGTGCATTGGGAGATGATTGCTCTGGCGCGGCCTATCTTGCATTG
TGGTGAGGAGCTTTTTCGACGCGGAGGCATTTATGGCGACGGAGAGGAAT
ATTACTATGCGACGCCCTCTATCCTGCCGCATCCAACCAACCCGGAAGAG
GATCATCTCATCATCATCCGACTTCTAAACTATCGCATCGACCCCGTAGG
ACGTTTTTACAAGGATTATTTGCCAAAATATGACACGAGCGGCATCTTGC
GTAGCGCATGCGTGCTCCATGATGGTCGTGATGCAGAACGTGGAGACATC
CTACGCATCATAGACGGGCGCTTTCAGAGGTTGTCATACCGTTTCCTAGG
TACTGAGGACCCTCGATTATTTCGCTCAGAATCAGGGGAGATTCGCGTTT
TTTGGACCAGCTGGGAATTCTCCAAGTACCTTGGTGAAGGGTCACGGATC
ATAAGCGGAGTCCTACACGTCAAAAGTTCTACAATTTACGTGGACCACCT
CTTCCAAAGTCCCTTTGATCGATTTTTGGAGAAAAATTGGGTCGTTTTTC
AAGTCCCTGGGGGCCCTATGAGGATTGTGTATGAGTGGTATCCCTTACGG
GTAGGCACATTTAATTGCAGTGTTGATATTGACAAAGTGCAGTTGGATTT
AACGATAGATACGCCACTGGTTTTTAAGCACGCCCGCGGATCATCAAATG
GATGCTACTACAAGGGCGAGCTCTGGTTCCTCATCCACGGCACTACGTGG
CACAAGGGACCAGGTCCAGTCTACTACCATCGAATAGCTGTGCTAGACCC
CATCACCTTGCATTTGAAGCGGTACACATACCCCTTTAAGCTAGAATCAC
AGAATGGCTCAGTCGAATTCTCATTGGGAATCACTATTGATGCCCAAGAT
CGTCTCTCTATCGCTTATAGCGTGTTTGACTTGACGTCTGTAATTCGGAG
GATTCCAATTTGGAAAGTTGAAACCTTGATGGCAAAGCCCTGA
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Synonyms
Publications