jgi.p|Nanoce1779_2|568991, mRNA_9652 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568991
Unique NamemRNA_9652
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length573
Alignment locationscaffold_31:232894..233569 +

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Properties
Property NameValue
TranscriptId569077
TrackFilteredModels2
ProteinId568991
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:232894..233569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568991gene_9652Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568991mRNA_9652-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9652CDS_9652Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9652 ID=mRNA_9652|Name=jgi.p|Nanoce1779_2|568991|organism=Nannochloropsis oceanica|type=mRNA|length=573bp
ATGGAAAAATACTTTCCGAGTGCAGAGAAGCATCGACGAGCGACGAAAGA
GGATTTGTCGGGATTAACGGCGGAGGACAAGGCAGAGCGACGTAAGAAAC
GCGCACGCATGTATAATCGCATGTCTCGTAAGCGCCTTGACCGGCTGCGT
GGCGACCTGCACAACGACGTGAATCGCATGGAAATCTACAAGAATATTGT
CGATGATGCACCGGGCATGATATGTGTCATTTCATCCGACATTCAAAGCC
AGGTTTTGTACATCAACAAGGCGGCTCGATGCGTCCTTCACACTGAGCCC
TCGCAGCTGCTAGGGTCCAGCTTCTGGGATATCGTCCACACGGAAGATAA
GGTGGCGCTTCTCAGAGCCCTCATCGCCGTCACCACCTTCAAGTCGGGTG
GGAAAGTAGAAAAGCTAGACTGTCGTGTCGTCACTAATCACCCCGGTATC
TATGTCTCTGTCCGGATGGCGCTAGTAAATGGAATGCAGGGCATTGTCTG
TACAATGTGCCATGAATATCCCCTGCCCGCCATTTTGCGCATAACGCCTG
ATGGACGGCAGTGTGTCATGTAG
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protein sequence of jgi.p|Nanoce1779_2|568991

>mRNA_9652-protein ID=mRNA_9652-protein|Name=jgi.p|Nanoce1779_2|568991|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MEKYFPSAEKHRRATKEDLSGLTAEDKAERRKKRARMYNRMSRKRLDRLR
GDLHNDVNRMEIYKNIVDDAPGMICVISSDIQSQVLYINKAARCVLHTEP
SQLLGSSFWDIVHTEDKVALLRALIAVTTFKSGGKVEKLDCRVVTNHPGI
YVSVRMALVNGMQGIVCTMCHEYPLPAILRITPDGRQCVM*
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mRNA from alignment at scaffold_31:232894..233569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9652 ID=mRNA_9652|Name=jgi.p|Nanoce1779_2|568991|organism=Nannochloropsis oceanica|type=mRNA|length=676bp|location=Sequence derived from alignment at scaffold_31:232894..233569+ (Nannochloropsis oceanica)
ATGGAAAAATACTTTCCGGTAAGAGACATGAGACATATGTGCTTAGTGCT
TGCGTCTTTGGTGTAGCCTCTTTTAAGAACTCAATCTTTCTCTCTACTCA
CTTCTTTTTCCGGTACAACAGAGTGCAGAGAAGCATCGACGAGCGACGAA
AGAGGATTTGTCGGGATTAACGGCGGAGGACAAGGCAGAGCGACGTAAGA
AACGCGCACGCATGTATAATCGCATGTCTCGTAAGCGCCTTGACCGGCTG
CGTGGCGACCTGCACAACGACGTGAATCGCATGGAAATCTACAAGAATAT
TGTCGATGATGCACCGGGCATGATATGTGTCATTTCATCCGACATTCAAA
GCCAGGTTTTGTACATCAACAAGGCGGCTCGATGCGTCCTTCACACTGAG
CCCTCGCAGCTGCTAGGGTCCAGCTTCTGGGATATCGTCCACACGGAAGA
TAAGGTGGCGCTTCTCAGAGCCCTCATCGCCGTCACCACCTTCAAGTCGG
GTGGGAAAGTAGAAAAGCTAGACTGTCGTGTCGTCACTAATCACCCCGGT
ATCTATGTCTCTGTCCGGATGGCGCTAGTAAATGGAATGCAGGGCATTGT
CTGTACAATGTGCCATGAATATCCCCTGCCCGCCATTTTGCGCATAACGC
CTGATGGACGGCAGTGTGTCATGTAG
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Coding sequence (CDS) from alignment at scaffold_31:232894..233569+

>mRNA_9652 ID=mRNA_9652|Name=jgi.p|Nanoce1779_2|568991|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_31:232894..233569+ (Nannochloropsis oceanica)
ATGGAAAAATACTTTCCGAGTGCAGAGAAGCATCGACGAGCGACGAAAGA
GGATTTGTCGGGATTAACGGCGGAGGACAAGGCAGAGCGACGTAAGAAAC
GCGCACGCATGTATAATCGCATGTCTCGTAAGCGCCTTGACCGGCTGCGT
GGCGACCTGCACAACGACGTGAATCGCATGGAAATCTACAAGAATATTGT
CGATGATGCACCGGGCATGATATGTGTCATTTCATCCGACATTCAAAGCC
AGGTTTTGTACATCAACAAGGCGGCTCGATGCGTCCTTCACACTGAGCCC
TCGCAGCTGCTAGGGTCCAGCTTCTGGGATATCGTCCACACGGAAGATAA
GGTGGCGCTTCTCAGAGCCCTCATCGCCGTCACCACCTTCAAGTCGGGTG
GGAAAGTAGAAAAGCTAGACTGTCGTGTCGTCACTAATCACCCCGGTATC
TATGTCTCTGTCCGGATGGCGCTAGTAAATGGAATGCAGGGCATTGTCTG
TACAATGTGCCATGAATATCCCCTGCCCGCCATTTTGCGCATAACGCCTG
ATGGACGGCAGTGTGTCATGTAGATGGAAAAATACTTTCCGAGTGCAGAG
AAGCATCGACGAGCGACGAAAGAGGATTTGTCGGGATTAACGGCGGAGGA
CAAGGCAGAGCGACGTAAGAAACGCGCACGCATGTATAATCGCATGTCTC
GTAAGCGCCTTGACCGGCTGCGTGGCGACCTGCACAACGACGTGAATCGC
ATGGAAATCTACAAGAATATTGTCGATGATGCACCGGGCATGATATGTGT
CATTTCATCCGACATTCAAAGCCAGGTTTTGTACATCAACAAGGCGGCTC
GATGCGTCCTTCACACTGAGCCCTCGCAGCTGCTAGGGTCCAGCTTCTGG
GATATCGTCCACACGGAAGATAAGGTGGCGCTTCTCAGAGCCCTCATCGC
CGTCACCACCTTCAAGTCGGGTGGGAAAGTAGAAAAGCTAGACTGTCGTG
TCGTCACTAATCACCCCGGTATCTATGTCTCTGTCCGGATGGCGCTAGTA
AATGGAATGCAGGGCATTGTCTGTACAATGTGCCATGAATATCCCCTGCC
CGCCATTTTGCGCATAACGCCTGATGGACGGCAGTGTGTCATGTAG
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Synonyms
Publications