jgi.p|Nanoce1779_2|605389, mRNA_9651 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605389
Unique NamemRNA_9651
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length457
Alignment locationscaffold_31:229793..230249 +

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Properties
Property NameValue
TranscriptId605475
TrackFilteredModels2
ProteinId605389
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:229793..230249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605389gene_9651Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605389mRNA_9651-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9651CDS_9651Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9651 ID=mRNA_9651|Name=jgi.p|Nanoce1779_2|605389|organism=Nannochloropsis oceanica|type=mRNA|length=457bp
CTCCCCTTATTTGTGAGTGGAAGCTATCTCTGACAAGAAATGATGACCCG
AAATGAGGCTAGAGCTCGTCATCGAGCCAGACGAAGTCCTCCCTCACCTT
CGGTAGAATGAGCGTTTCGGTGGGACGAAGTACAGCATGCTTTCTACTGA
CACTCTCTATGTCGTCTCGCTCCTGCTGCTCCTCAATCTCTTCTTCATGT
CCCTAATCCTTTATAACGCTTTCCCTTTTTCGCGAACGCATCACCCTGGA
GACACAGGCAGCAACGTACTCGACGCGGCCTCACTTGACCCTGCTGTTGC
CGCGCATGCAACTGCTACCTCGTATTCATCTCTTCATGCGTCGCAGTCCG
CCGGCAGCTACTAATATCTGGGCACACTAGGTACCACTGTACTAGTGTAC
GCAGACTTCTGATACGAAGTGGGGCAGATAGCAAATTGCCACCGTCGATC
GCCCTGT
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protein sequence of jgi.p|Nanoce1779_2|605389

>mRNA_9651-protein ID=mRNA_9651-protein|Name=jgi.p|Nanoce1779_2|605389|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MLSTDTLYVVSLLLLLNLFFMSLILYNAFPFSRTHHPGDTGSNVLDAASL
DPAVAAHATATSYSSLHASQSAGSY*
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mRNA from alignment at scaffold_31:229793..230249+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9651 ID=mRNA_9651|Name=jgi.p|Nanoce1779_2|605389|organism=Nannochloropsis oceanica|type=mRNA|length=457bp|location=Sequence derived from alignment at scaffold_31:229793..230249+ (Nannochloropsis oceanica)
CTCCCCTTATTTGTGAGTGGAAGCTATCTCTGACAAGAAATGATGACCCG
AAATGAGGCTAGAGCTCGTCATCGAGCCAGACGAAGTCCTCCCTCACCTT
CGGTAGAATGAGCGTTTCGGTGGGACGAAGTACAGCATGCTTTCTACTGA
CACTCTCTATGTCGTCTCGCTCCTGCTGCTCCTCAATCTCTTCTTCATGT
CCCTAATCCTTTATAACGCTTTCCCTTTTTCGCGAACGCATCACCCTGGA
GACACAGGCAGCAACGTACTCGACGCGGCCTCACTTGACCCTGCTGTTGC
CGCGCATGCAACTGCTACCTCGTATTCATCTCTTCATGCGTCGCAGTCCG
CCGGCAGCTACTAATATCTGGGCACACTAGGTACCACTGTACTAGTGTAC
GCAGACTTCTGATACGAAGTGGGGCAGATAGCAAATTGCCACCGTCGATC
GCCCTGT
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Coding sequence (CDS) from alignment at scaffold_31:229793..230249+

>mRNA_9651 ID=mRNA_9651|Name=jgi.p|Nanoce1779_2|605389|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_31:229793..230249+ (Nannochloropsis oceanica)
ATGCTTTCTACTGACACTCTCTATGTCGTCTCGCTCCTGCTGCTCCTCAA
TCTCTTCTTCATGTCCCTAATCCTTTATAACGCTTTCCCTTTTTCGCGAA
CGCATCACCCTGGAGACACAGGCAGCAACGTACTCGACGCGGCCTCACTT
GACCCTGCTGTTGCCGCGCATGCAACTGCTACCTCGTATTCATCTCTTCA
TGCGTCGCAGTCCGCCGGCAGCTACTAA
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Synonyms
Publications