jgi.p|Nanoce1779_2|533146, mRNA_9648 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533146
Unique NamemRNA_9648
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length753
Alignment locationscaffold_31:216421..217173 +

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Properties
Property NameValue
TranscriptId533232
TrackFilteredModels2
ProteinId533146
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:216421..217173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533146gene_9648Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533146mRNA_9648-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9648CDS_9648Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9648 ID=mRNA_9648|Name=jgi.p|Nanoce1779_2|533146|organism=Nannochloropsis oceanica|type=mRNA|length=753bp
ATGAGACAATTGGCAAAACCTTCGAAAGCAATATTATCAGTAAGTGATAC
ACTTCCCAATAAACGAGCTGCTCTAGATGCAGTACGTCGTATCGCCGCTC
AACTTCAAGAAACGGTGACCTCAAGCTGTCAATTGGTTCGGTTTGGAAGT
GATTGGGGCCATCATACCCTTTGCGACTACAAGCCAGCGAAATCGTGCCA
GTTTTACTCATTTGGCATATCAAACGATTATTCTTTTGACACGGATCTTG
CCCAAAAATGGGGCTGCCACGGTTTTGCGGCTGATCCTACCGTCGACCAT
CCCTCCATGCTTCATCCCAACGTGACTTTTCATAGCATTGGAGCCAAAAT
GCGAACAGCGCTCCCCTTTCATATTGTCACATCTATGCCAGCCCTTCGAA
AATGGCTCGGGCACCCCCAAGTGACTGTTCTTAAGATGGACTGCGAGGGC
TGCGAGTACTCGTTGGGGGAAGACATTGCATTGGAGGACCCTGCATTCTT
CACACACGTCGATCAATTTGCGGTTGAGGTTCATGTGAGTAAACATTGGT
TAAAGACAGAGGATGCTCTCTATTCGCTAGGGTTACTCTTTTACTTTCTA
GAGAAAGCGGGCCTAAGGCTTCAGCACGCGGAAATCCTAGGCTGTGATCC
CAAAAAAGAAAGAGTAGGATGTATGGACGAATTGGAGGAAATGGATTACC
CGTGTGGCCTCGGGAAGAGTTGCCATAACTATTTGTTCGCCCGCCAACTC
TGA
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protein sequence of jgi.p|Nanoce1779_2|533146

>mRNA_9648-protein ID=mRNA_9648-protein|Name=jgi.p|Nanoce1779_2|533146|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MRQLAKPSKAILSVSDTLPNKRAALDAVRRIAAQLQETVTSSCQLVRFGS
DWGHHTLCDYKPAKSCQFYSFGISNDYSFDTDLAQKWGCHGFAADPTVDH
PSMLHPNVTFHSIGAKMRTALPFHIVTSMPALRKWLGHPQVTVLKMDCEG
CEYSLGEDIALEDPAFFTHVDQFAVEVHVSKHWLKTEDALYSLGLLFYFL
EKAGLRLQHAEILGCDPKKERVGCMDELEEMDYPCGLGKSCHNYLFARQL
*
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mRNA from alignment at scaffold_31:216421..217173+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9648 ID=mRNA_9648|Name=jgi.p|Nanoce1779_2|533146|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at scaffold_31:216421..217173+ (Nannochloropsis oceanica)
ATGAGACAATTGGCAAAACCTTCGAAAGCAATATTATCAGTAAGTGATAC
ACTTCCCAATAAACGAGCTGCTCTAGATGCAGTACGTCGTATCGCCGCTC
AACTTCAAGAAACGGTGACCTCAAGCTGTCAATTGGTTCGGTTTGGAAGT
GATTGGGGCCATCATACCCTTTGCGACTACAAGCCAGCGAAATCGTGCCA
GTTTTACTCATTTGGCATATCAAACGATTATTCTTTTGACACGGATCTTG
CCCAAAAATGGGGCTGCCACGGTTTTGCGGCTGATCCTACCGTCGACCAT
CCCTCCATGCTTCATCCCAACGTGACTTTTCATAGCATTGGAGCCAAAAT
GCGAACAGCGCTCCCCTTTCATATTGTCACATCTATGCCAGCCCTTCGAA
AATGGCTCGGGCACCCCCAAGTGACTGTTCTTAAGATGGACTGCGAGGGC
TGCGAGTACTCGTTGGGGGAAGACATTGCATTGGAGGACCCTGCATTCTT
CACACACGTCGATCAATTTGCGGTTGAGGTTCATGTGAGTAAACATTGGT
TAAAGACAGAGGATGCTCTCTATTCGCTAGGGTTACTCTTTTACTTTCTA
GAGAAAGCGGGCCTAAGGCTTCAGCACGCGGAAATCCTAGGCTGTGATCC
CAAAAAAGAAAGAGTAGGATGTATGGACGAATTGGAGGAAATGGATTACC
CGTGTGGCCTCGGGAAGAGTTGCCATAACTATTTGTTCGCCCGCCAACTC
TGA
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Coding sequence (CDS) from alignment at scaffold_31:216421..217173+

>mRNA_9648 ID=mRNA_9648|Name=jgi.p|Nanoce1779_2|533146|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_31:216421..217173+ (Nannochloropsis oceanica)
ATGAGACAATTGGCAAAACCTTCGAAAGCAATATTATCAGTAAGTGATAC
ACTTCCCAATAAACGAGCTGCTCTAGATGCAGTACGTCGTATCGCCGCTC
AACTTCAAGAAACGGTGACCTCAAGCTGTCAATTGGTTCGGTTTGGAAGT
GATTGGGGCCATCATACCCTTTGCGACTACAAGCCAGCGAAATCGTGCCA
GTTTTACTCATTTGGCATATCAAACGATTATTCTTTTGACACGGATCTTG
CCCAAAAATGGGGCTGCCACGGTTTTGCGGCTGATCCTACCGTCGACCAT
CCCTCCATGCTTCATCCCAACGTGACTTTTCATAGCATTGGAGCCAAAAT
GCGAACAGCGCTCCCCTTTCATATTGTCACATCTATGCCAGCCCTTCGAA
AATGGCTCGGGCACCCCCAAGTGACTGTTCTTAAGATGGACTGCGAGGGC
TGCGAGTACTCGTTGGGGGAAGACATTGCATTGGAGGACCCTGCATTCTT
CACACACGTCGATCAATTTGCGGTTGAGGTTCATGTGAGTAAACATTGGT
TAAAGACAGAGGATGCTCTCTATTCGCTAGGGTTACTCTTTTACTTTCTA
GAGAAAGCGGGCCTAAGGCTTCAGCACGCGGAAATCCTAGGCTGTGATCC
CAAAAAAGAAAGAGTAGGATGTATGGACGAATTGGAGGAAATGGATTACC
CGTGTGGCCTCGGGAAGAGTTGCCATAACTATTTGTTCGCCCGCCAACTC
TGA
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Synonyms
Publications