jgi.p|Nanoce1779_2|605358, mRNA_9646 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605358
Unique NamemRNA_9646
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1925
Alignment locationscaffold_31:185953..187894 -

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Properties
Property NameValue
TranscriptId605444
TrackFilteredModels2
ProteinId605358
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:185953..187894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605358gene_9646Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605358mRNA_9646-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9646CDS_9646Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9646 ID=mRNA_9646|Name=jgi.p|Nanoce1779_2|605358|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp
AGCGTCCCGGCCTCAGTTGTCGCCCTTTGTCGGGTGCTCTCTCGCGTTGC
TCATGGAAAAATCGGACAGATGGTTCAATGCCTATCATCTACGTAGGTGG
CTAAAAATCAATTCGTTTCTGAGTCTCCTCGTGGCAGTGAGCTTGTTACA
CTGGCATCAAGATAGAGAAAAGGTCCTTTTAACGACTGAATTGCACGGTC
TCAGGGACGATGTTGCGGCAAGTCTTGATTACAAATATTTGTTGACATGC
AACGGCAAGTGCGGCCCCATGGAGAAATGCTTCCTAGGCAAATGTTTCTG
TTTGCCAGGACGTACCGGCAGCGGTTGTCAAAACATTCGCACAGCCGATT
GGTTGCTTACAGGAGACCATTGCCCTGTATTTCATACTTTGAAAGAGGTC
CAGGAGAAACCGGTTCAGGAGTACCCTGTTGAAGCGTGCCACATCGCCGA
GAAAGATCCTCTCAGCTGCGGCATATTTTGTTATTGGCAGGAGGATGCCG
GCATCATTCAAGTCCCCAAATCCAGCTGGGAAAGAGTATCCGACATAGAG
TATGCCATCTGGAAGGATTTGGAAAAGATGGGACCGGACGACCGAAATCC
TGAGCATGCGGAAGGCGCTTTTTCAGACTTGGGTAATTACCTTGAAATTG
GCGCTGGCCCATACACACAGACCAACAATATTCTTAATGTTCGAAACAAC
GTGCGCATCAAAAATATCTATCTGGCAGAACCCAACATCTTTCGGTACTT
AGCTTTGGATAACTGTATCTACAAAGATAATACCATTCATGGTCAGCGGG
TAAATTTGCTCTCCTTACCGGTGGAAGAGCTGCCTGCTACGGAATTTTTT
GATACAGTTGTGGCTATTAATGTCATCGAACATGTGTTCAGTGCCATCGA
CTTCCTCACGGCCGTGTATAGCGCTTTGAAGCCCGGCGGGATCTTAGTGT
TCGGAGAGCGTTACTTCGATGACCCGGACAAGGACGCGCTGGTGCTGGGC
TCCGCGCTTCTTCATCCCATTCGTGTGAAGCGCGTGTTTTTACAGCATTT
TTTGCGAATGTTTGATACCCTGTACATAGGCGACCATCACACAAGCTTCG
CAAAAGCCAGAGGATTTGAAGAATCTGGTTATTATTTCATAGGTCGCAAG
AAGGAGATCTTCTCGGCGTTTGATGAACCAGGGCAGGCGGAGTTAGACAC
CCGTTTTCCTGCTAATCCATTTTGAAGTGCGGAATCGGCATCTCAATGAA
GAATGCCCATTGCTTCGAGCTACTGGCTGCATGGCCGAAGAATTGGAGAG
TCCGGGCGTGCAGGATTGAAATATGGGCTGAGTAAATGCTAGCAAGGATA
ATCTTGTCAGCTATTTGATTCTTTTTCAGAGCAATCAGCAGCCTCTTTGG
CAGACAAGAAATAGAACCATCGAACATGCTCTTCACTCTCAAGAGCATTC
TCTCGAGATTTCGTGCACGAAATCCCTTAAATGGTGTTCGACCAGTTGTT
AACTATTAGTGTGGTTCCAGGGTTCTTCCAGAGTTGTTGCCAGGCGGCCA
TCACCTCTGTGAACTCAATCTGAATGAACCTATTACGATCAATTCTAGAT
AAGGTCCTTGATACCTACTCCTAAGTCCTGGAGGGTAATTGGTGACACCA
CATGTATATACTTTCTTTTCCACGGGTCGTATCTGATTTTTCTCCGGGTC
ATTCCGCGACTTGATCGTCTGCTCTTTGTTCGATGCTTCCCGCTGCGCAC
TGTTTTTTGTTGTGCGCCAGTGACCAGTGCTCATCACACCCACTACCAAA
TTCACCCAAATTGACCGCATATCGTAGCTTTGTCCCAAGACATGTCCAGT
TCTTGGGCTTGTCCTCCGAATATGCTTTGCGCTGGTCCACGTCCGCTAGC
ATCAGCACTCAATAGTCCACGTCGC
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protein sequence of jgi.p|Nanoce1779_2|605358

>mRNA_9646-protein ID=mRNA_9646-protein|Name=jgi.p|Nanoce1779_2|605358|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MEKSDRWFNAYHLRRWLKINSFLSLLVAVSLLHWHQDREKVLLTTELHGL
RDDVAASLDYKYLLTCNGKCGPMEKCFLGKCFCLPGRTGSGCQNIRTADW
LLTGDHCPVFHTLKEVQEKPVQEYPVEACHIAEKDPLSCGIFCYWQEDAG
IIQVPKSSWERVSDIEYAIWKDLEKMGPDDRNPEHAEGAFSDLGNYLEIG
AGPYTQTNNILNVRNNVRIKNIYLAEPNIFRYLALDNCIYKDNTIHGQRV
NLLSLPVEELPATEFFDTVVAINVIEHVFSAIDFLTAVYSALKPGGILVF
GERYFDDPDKDALVLGSALLHPIRVKRVFLQHFLRMFDTLYIGDHHTSFA
KARGFEESGYYFIGRKKEIFSAFDEPGQAELDTRFPANPF*
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mRNA from alignment at scaffold_31:185953..187894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9646 ID=mRNA_9646|Name=jgi.p|Nanoce1779_2|605358|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at scaffold_31:185953..187894- (Nannochloropsis oceanica)
AGCGTCCCGGCCTCAGTTGTCGCCCTTTGTCGGGTGCTCTCTCGCGTTGC
TCATGGAAAAATCGGACAGATGGTTCAATGCCTATCATCTACGTAGGTGG
CTAAAAATCAATTCGTTTCTGAGTCTCCTCGTGGCAGTGAGCTTGTTACA
CTGGCATCAAGATAGAGAAAAGGTCCTTTTAACGACTGAATTGCACGGTC
TCAGGGACGATGTTGCGGCAAGTCTTGATTACAAATATTTGTTGACATGC
AACGGCAAGTGCGGCCCCATGGAGAAATGCTTCCTAGGCAAATGTTTCTG
TTTGCCAGGACGTACCGGCAGCGGTTGTCAAAACATTCGCACAGCCGATT
GGTTGCTTACAGGAGACCATTGCCCTGTATTTCATACTTTGAAAGAGGTC
CAGGAGAAACCGGTTCAGGAGTACCCTGTTGAAGCGTGCCACATCGCCGA
GAAAGATCCTCTCAGCTGCGGCATATTTTGTTATTGGCAGGAGGATGCCG
GCATCATTCAAGTCCCCAAATCCAGCTGGGAAAGAGTATCCGACATAGAG
TATGCCATCTGGAAGGATTTGGAAAAGATGGGACCGGACGACCGAAATCC
TGAGCATGCGGAAGGGTTAGGAGCCTTCGCAGCGCTTTTTCAGACTTGGG
TAATTACCTTGAAATTGGCGCTGGCCCATACACACAGACCAACAATATTC
TTAATGTTCGAAACAACGTGCGCATCAAAAATATCTATCTGGCAGAACCC
AACATCTTTCGGTACTTAGCTTTGGATAACTGTATCTACAAAGATAATAC
CATTCATGGTCAGCGGGTAAATTTGCTCTCCTTACCGGTGGAAGAGCTGC
CTGCTACGGAATTTTTTGATACAGTTGTGGCTATTAATGTCATCGAACAT
GTGTTCAGTGCCATCGACTTCCTCACGGCCGTGTATAGCGCTTTGAAGCC
CGGCGGGATCTTAGTGTTCGGAGAGCGTTACTTCGATGACCCGGACAAGG
ACGCGCTGGTGCTGGGCTCCGCGCTTCTTCATCCCATTCGTGTGAAGCGC
GTGTTTTTACAGCATTTTTTGCGAATGTTTGATACCCTGTACATAGGCGA
CCATCACACAAGCTTCGCAAAAGCCAGAGGATTTGAAGAATCTGGTTATT
ATTTCATAGGTCGCAAGAAGGAGATCTTCTCGGCGTTTGATGAACCAGGG
CAGGCGGAGTTAGACACCCGTTTTCCTGCTAATCCATTTTGAAGTGCGGA
ATCGGCATCTCAATGAAGAATGCCCATTGCTTCGAGCTACTGGCTGCATG
GCCGAAGAATTGGAGAGTCCGGGCGTGCAGGATTGAAATATGGGCTGAGT
AAATGCTAGCAAGGATAATCTTGTCAGCTATTTGATTCTTTTTCAGAGCA
ATCAGCAGCCTCTTTGGCAGACAAGAAATAGAACCATCGAACATGCTCTT
CACTCTCAAGAGCATTCTCTCGAGATTTCGTGCACGAAATCCCTTAAATG
GTGTTCGACCAGTTGTTAACTATTAGTGTGGTTCCAGGGTTCTTCCAGAG
TTGTTGCCAGGCGGCCATCACCTCTGTGAACTCAATCTGAATGAACCTAT
TACGATCAATTCTAGATAAGGTCCTTGATACCTACTCCTAAGTCCTGGAG
GGTAATTGGTGACACCACATGTATATACTTTCTTTTCCACGGGTCGTATC
TGATTTTTCTCCGGGTCATTCCGCGACTTGATCGTCTGCTCTTTGTTCGA
TGCTTCCCGCTGCGCACTGTTTTTTGTTGTGCGCCAGTGACCAGTGCTCA
TCACACCCACTACCAAATTCACCCAAATTGACCGCATATCGTAGCTTTGT
CCCAAGACATGTCCAGTTCTTGGGCTTGTCCTCCGAATATGCTTTGCGCT
GGTCCACGTCCGCTAGCATCAGCACTCAATAGTCCACGTCGC
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Coding sequence (CDS) from alignment at scaffold_31:185953..187894-

>mRNA_9646 ID=mRNA_9646|Name=jgi.p|Nanoce1779_2|605358|organism=Nannochloropsis oceanica|type=CDS|length=2346bp|location=Sequence derived from alignment at scaffold_31:185953..187894- (Nannochloropsis oceanica)
CGCTTTTTCAGACTTGGGTAATTACCTTGAAATTGGCGCTGGCCCATACA
CACAGACCAACAATATTCTTAATGTTCGAAACAACGTGCGCATCAAAAAT
ATCTATCTGGCAGAACCCAACATCTTTCGGTACTTAGCTTTGGATAACTG
TATCTACAAAGATAATACCATTCATGGTCAGCGGGTAAATTTGCTCTCCT
TACCGGTGGAAGAGCTGCCTGCTACGGAATTTTTTGATACAGTTGTGGCT
ATTAATGTCATCGAACATGTGTTCAGTGCCATCGACTTCCTCACGGCCGT
GTATAGCGCTTTGAAGCCCGGCGGGATCTTAGTGTTCGGAGAGCGTTACT
TCGATGACCCGGACAAGGACGCGCTGGTGCTGGGCTCCGCGCTTCTTCAT
CCCATTCGTGTGAAGCGCGTGTTTTTACAGCATTTTTTGCGAATGTTTGA
TACCCTGTACATAGGCGACCATCACACAAGCTTCGCAAAAGCCAGAGGAT
TTGAAGAATCTGGTTATTATTTCATAGGTCGCAAGAAGGAGATCTTCTCG
GCGTTTGATGAACCAGGGCAGGCGGAGTTAGACACCCGTTTTCCTGCTAA
TCCATTTTGAATGGAAAAATCGGACAGATGGTTCAATGCCTATCATCTAC
GTAGGTGGCTAAAAATCAATTCGTTTCTGAGTCTCCTCGTGGCAGTGAGC
TTGTTACACTGGCATCAAGATAGAGAAAAGGTCCTTTTAACGACTGAATT
GCACGGTCTCAGGGACGATGTTGCGGCAAGTCTTGATTACAAATATTTGT
TGACATGCAACGGCAAGTGCGGCCCCATGGAGAAATGCTTCCTAGGCAAA
TGTTTCTGTTTGCCAGGACGTACCGGCAGCGGTTGTCAAAACATTCGCAC
AGCCGATTGGTTGCTTACAGGAGACCATTGCCCTGTATTTCATACTTTGA
AAGAGGTCCAGGAGAAACCGGTTCAGGAGTACCCTGTTGAAGCGTGCCAC
ATCGCCGAGAAAGATCCTCTCAGCTGCGGCATATTTTGTTATTGGCAGGA
GGATGCCGGCATCATTCAAGTCCCCAAATCCAGCTGGGAAAGAGTATCCG
ACATAGAGTATGCCATCTGGAAGGATTTGGAAAAGATGGGACCGGACGAC
CGAAATCCTGAGCATGCGGAAGGCGCTTTTTCAGACTTGGGTAATTACCT
TGAAATTGGCGCTGGCCCATACACACAGACCAACAATATTCTTAATGTTC
GAAACAACGTGCGCATCAAAAATATCTATCTGGCAGAACCCAACATCTTT
CGGTACTTAGCTTTGGATAACTGTATCTACAAAGATAATACCATTCATGG
TCAGCGGGTAAATTTGCTCTCCTTACCGGTGGAAGAGCTGCCTGCTACGG
AATTTTTTGATACAGTTGTGGCTATTAATGTCATCGAACATGTGTTCAGT
GCCATCGACTTCCTCACGGCCGTGTATAGCGCTTTGAAGCCCGGCGGGAT
CTTAGTGTTCGGAGAGCGTTACTTCGATGACCCGGACAAGGACGCGCTGG
TGCTGGGCTCCGCGCTTCTTCATCCCATTCGTGTGAAGCGCGTGTTTTTA
CAGCATTTTTTGCGAATGTTTGATACCCTGTACATAGGCGACCATCACAC
AAGCTTCGCAAAAGCCAGAGGATTTGAAGAATCTGGTTATTATTTCATAG
GTCGCAAGAAGGAGATCTTCTCGGCGTTTGATGAACCAGGGCAGGCGGAG
TTAGACACCCGTTTTCCTGCTAATCCATTTTGAATGGAAAAATCGGACAG
ATGGTTCAATGCCTATCATCTACGTAGGTGGCTAAAAATCAATTCGTTTC
TGAGTCTCCTCGTGGCAGTGAGCTTGTTACACTGGCATCAAGATAGAGAA
AAGGTCCTTTTAACGACTGAATTGCACGGTCTCAGGGACGATGTTGCGGC
AAGTCTTGATTACAAATATTTGTTGACATGCAACGGCAAGTGCGGCCCCA
TGGAGAAATGCTTCCTAGGCAAATGTTTCTGTTTGCCAGGACGTACCGGC
AGCGGTTGTCAAAACATTCGCACAGCCGATTGGTTGCTTACAGGAGACCA
TTGCCCTGTATTTCATACTTTGAAAGAGGTCCAGGAGAAACCGGTTCAGG
AGTACCCTGTTGAAGCGTGCCACATCGCCGAGAAAGATCCTCTCAGCTGC
GGCATATTTTGTTATTGGCAGGAGGATGCCGGCATCATTCAAGTCCCCAA
ATCCAGCTGGGAAAGAGTATCCGACATAGAGTATGCCATCTGGAAGGATT
TGGAAAAGATGGGACCGGACGACCGAAATCCTGAGCATGCGGAAGG
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Synonyms
Publications