jgi.p|Nanoce1779_2|560152, mRNA_9644 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|560152
Unique Name	mRNA_9644
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2641
Alignment location	scaffold_31:180498..183370 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	560238
Track	FilteredModels2
ProteinId	560152

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:180498..183370 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560152	gene_9644	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560152	mRNA_9644-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9644	CDS_9644	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:180498..183370+
coding sequence from alignment at scaffold_31:180498..183370+

mRNA sequence

>mRNA_9644 ID=mRNA_9644|Name=jgi.p|Nanoce1779_2|560152|organism=Nannochloropsis oceanica|type=mRNA|length=2641bp
GGTTGGAGACTAAATTATGCATGCAAAAAAAGGTTGTGACAAATGCACTG
CGTGGTTATGTTGGTGGGGTCTCCTACTCTCGCTTCTAGAGCGCGACGTA
GAGTTGACCGTAGGCAAATACCGGGGACGTCCCCTTAGGTGAAAAACAAT
ACCTGCTGTCATGCACGAATGAGATTTAAAGGCACTCATATTTTGTTCTC
ATCTACTTCTGCATATAACAGATGATTTTTCTTATCCCTAAGTCCAAGAA
GACGACCTTCCAGCTGCTCAAAATTTCCCCATCTACAGGCTTGGTGCTGT
TGGGCATAACATTTTTTTGTGCTACCTGGTGGCCGGCAAGTAGTGTAACG
CCATTGTCAATATCCTCGGAAGCAGCATCATCGATAACCGATATTCTTAC
CAAACGGGCTTCGCTAGATGCCGTACGGCGTATTGCCGCTCAACTTCAAA
AGACGGTCACCTCAAGCTGTAAATTGAGTCGATTTGGTAGTGAGTGGGGC
CATCATACCCTGTGCGACTACAAGCCAGCGAAATCATGCCAATTTTATTC
ATTTGGCATATCAAATGATTATTCCTTTGACACGGATCTAGCTCAAAAAT
GGGGCTGCCAGGGTTTCGCAGCTGATCCTACAGTCATCCATCCCTCTAAG
CTACATCCCAACGTGACATTTCATAGCATTGGTGCCAAAATGCGAACAGC
GTTACCCTTTCAAATTGTCACATCTATGCCAGCCCTTCGAAAATGGCTCG
GGCACGCCCAAGTGACTGTTCTCAAGATGGACTGCGAGGGCTGCGAGTAC
TCATTGGGGGAAGACATTGCACTGGAGGACCCAGCATTTTTTACACACGT
CGATCAATTTGCGGTTGAGGTTCACGTGAGTAAACACTGGTTAGAGACGC
AGAATGCTCTCTACTCGCTAGGCTTACTTTTTCATTTTCTGGATGAAGCA
GGTCTAAGGCTTCAGCATGCGGAAATCCTGGGCTGTGATCCAGAAAAGGA
AAGGATAGGATGTATGGACGAGTTGGTTGAAATGGATTACCCATGTGGCC
TCGGGAAGAGTTGCCATAATTATTTGTTTGCCCGCTAAATGATCAATCTA
AAAGTATGCATGCAATTGAACAGAGGAGTCCATTTCTCCCTCCCTCGCTT
CCTCCCTCCGGTAACCTGACCCAAACTATTGGACGACCCGGGTCTGATTT
GGCAGCCCGGGTATTCTGCGGACCGTGTGCAAAAATAATTCTAGACGAGG
CATAAACAGGAAAGATGGAAAAATGGAAAAGAAGAGGTTGACCCGGGGCG
CCTCAAAATTAGCTAGACCCGGGTAAACACCTCAGACCCATCGACCGACA
CTTCTCCACGAAGTCTTTTATCCTTTTCATGGAATTAGCAGGATTACCTC
AGATACAAAGTAGCGAATATTCGAACCAATTTGACAGCTCAATTTTCGAA
GTACTTCTCACTGTTCCCTTCATTCTAAACCTTATTGACATATGAGACCC
TATGCACCGCTGTGGGTAATTGACGGAGAAAGGAGTATAGTGGACGTGTT
AACTGACTGAAGAATCGTTTTGGTATTCGTACGAAGGCCACAAAGAGTGG
AAATGACAGGAGGGCTGGTGCTGGACGAGTCTATGTTTCTGGAGGGAAAT
GTCTTCAATGACGACCGCTCTGATTTCAAGACAAAGAACCACAAATTCCC
TGCAAAGGCACTCCTTCAGAGGAACTTTTGGGTGTCATGTGCGTCGCGAG
CCAGTCCCAACAGTGGCGATGTGGTGCACAATCACCTGGGGAAAGACATG
CACCACATGGTCCCGACGATGGAGGCGGGGAAGACTATTAAGAGGTGGCC
ATGCTTCCACGGGATAATGGACTTGACGGGCGAGACGGACACACAATGTC
TTCGATAGTGAAGCAGCAGCTTGACCCGCAGGAGAAGAATTGCATAAAAG
TGAGGGTGCAGCACAAGGAGATGAGTTACCCTGATGCTTTCGAGGCCTTC
AAAAAAACTCATTGTCTGCAAGCCACGCGGCTGAGGGTAATAGCATGCAT
ATGCACAAGGCATGCCTGTCTGCTGCAGAATTGCCGGAAGCGGGGCCCGA
TGAATCTCCTACACTGCCGGGTGCAAAGGTCTTTCACCACGGCAACCTCT
TATCTCTCCCCTCTTTCCCACATCCAATGAGGTGCAATGGCCTGGGCCAT
GTCTTTGGTCAAAAAGTAGCAGGATGTATCGACGAGAAAGTCGTTTCATG
CGAGTATGATGTGGCTCATATTTTCCAGGGATTCGCAATTATCAAATGTT
AGAAAGGTGCCTTTGGTGTCCAGAATCTTGCGCAGCGAGAATGTCAAGTC
TAATTTTTCTTGTACGAGGAGATTGTGCAGAAGTTCCAGATGGTCGGGTT
CGTTGAAATTATCCTCGTCTAGGTACGCGATGTAGTCGTAGTTTAAAAGC
ATGGCCATGCTCGCGTAGATGCGGTGACCCAGCCATCCGTCGGCACCAGC
TGGGAAAGGCAATACCATGACATGGAGTGGCATTTTATGATTTAACCTTG
GCCATAAGCCTTGACCTTTGGGAACCAAAGGTCTTATCCCATCATCACTT
GAGAATCAAACTTCCTGGTATAACTCACTCCTGAATCATCA

protein sequence of jgi.p|Nanoce1779_2|560152

>mRNA_9644-protein ID=mRNA_9644-protein|Name=jgi.p|Nanoce1779_2|560152|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MIFLIPKSKKTTFQLLKISPSTGLVLLGITFFCATWWPASSVTPLSISSE
AASSITDILTKRASLDAVRRIAAQLQKTVTSSCKLSRFGSEWGHHTLCDY
KPAKSCQFYSFGISNDYSFDTDLAQKWGCQGFAADPTVIHPSKLHPNVTF
HSIGAKMRTALPFQIVTSMPALRKWLGHAQVTVLKMDCEGCEYSLGEDIA
LEDPAFFTHVDQFAVEVHVSKHWLETQNALYSLGLLFHFLDEAGLRLQHA
EILGCDPEKERIGCMDELVEMDYPCGLGKSCHNYLFAR*

mRNA from alignment at scaffold_31:180498..183370+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9644 ID=mRNA_9644|Name=jgi.p|Nanoce1779_2|560152|organism=Nannochloropsis oceanica|type=mRNA|length=2873bp|location=Sequence derived from alignment at scaffold_31:180498..183370+ (Nannochloropsis oceanica)
GGTTGGAGACTAAATTATGCATGCAAAAAAAGGTTGTGACAAATGCACTG
CGTGGTTATGTTGGTGGGGTCTCCTACTCTCGCTTCTAGAGCGCGACGTA
GAGTTGACCGTAGGCAAATACCGGGGACGTCCCCTTAGGTGAAAAACAAT
ACCTGCTGTCATGCACGAATGAGATTTAAAGGCACTCATATTTTGTTCTC
ATCTACTTCTGCATATAACAGATGATTTTTCTTATCCCTAAGTCCAAGAA
GACGACCTTCCAGCTGCTCAAAATTTCCCCATCTACAGGCTTGGTGCTGT
TGGGCATAACATTTTTTTGTGCTACCTGGTGGCCGGCAAGTAGTGTAACG
CCATTGTCAATATCCTCGGAAGCAGCATCATCGATAACCGATATTCTTAC
CAAACGGGCTTCGCTAGATGCCGTACGGCGTATTGCCGCTCAACTTCAAA
AGACGGTCACCTCAAGCTGTAAATTGAGTCGATTTGGTAGTGAGTGGGGC
CATCATACCCTGTGCGACTACAAGCCAGCGAAATCATGCCAATTTTATTC
ATTTGGCATATCAAATGATTATTCCTTTGACACGGATCTAGCTCAAAAAT
GGGGCTGCCAGGGTTTCGCAGCTGATCCTACAGTCATCCATCCCTCTAAG
CTACATCCCAACGTGACATTTCATAGCATTGGTGCCAAAATGCGAACAGC
GTTACCCTTTCAAATTGTCACATCTATGCCAGCCCTTCGAAAATGGCTCG
GGCACGCCCAAGTGACTGTTCTCAAGATGGACTGCGAGGGCTGCGAGTAC
TCATTGGGGGAAGACATTGCACTGGAGGACCCAGCATTTTTTACACACGT
CGATCAATTTGCGGTTGAGGTTCACGTGAGTAAACACTGGTTAGAGACGC
AGAATGCTCTCTACTCGCTAGGCTTACTTTTTCATTTTCTGGATGAAGCA
GGTCTAAGGCTTCAGCATGCGGAAATCCTGGGCTGTGATCCAGAAAAGGA
AAGGATAGGATGTATGGACGAGTTGGTTGAAATGGATTACCCATGTGGCC
TCGGGAAGAGTTGCCATAATTATTTGTTTGCCCGCTAAATGATCAATCTA
AAAGTATGCATGCAATTGAACAGAGGAGTCCATTTCTCCCTCCCTCGCTT
CCTCCCTCCGGTAACCTGACCCAAACTATTGGACGACCCGGGTCTGATTT
GGCAGCCCGGGTATTCTGCGGACCGTGTGCAAAAATAATTCTAGACGAGG
CATAAACAGGAAAGATGGAAAAATGGAAAAGAAGAGGTAATGAGGATGAG
TATGTGAGCAGTCGAAATGATTGTGCGCTGTTGTTTTTGGAGGGGGGCTT
GAAATTAACTCATCCCTTCTCACCCCCTTAACTAGGTTGACCCGGGGCGC
CTCAAAATTAGCTAGACCCGGGTAAACACCTCAGACCCATCGACCGACAC
TTCTCCACGAAGTCTTTTATCCTTTTCATGGAATTAGCAGGATTACCTCA
GATACAAAGTAGCGAATATTCGAACCAATTTGACAGCTCAATTTTCGAAG
TACTTCTCACTGTTCCCTTCATTCTAAACCTTATTGACATATGAGACCCT
ATGCACCGCTGTGGGTAATTGACGGAGAAAGGAGTATAGTGGACGTGTTA
ACTGACTGAAGAATCGTTTTGGTATTCGTACGAAGGCCACAAAGAGTGGA
AATGACAGGAGGGCTGGTGCTGGACGAGTCTATGTTTCTGGAGGGAAATG
TCTTCAATGACGACCGCTCTGATTTCAAGACAAAGAACCACAAATTCCCT
GCAAAGGCACTCCTTCAGAGGAACTTTTGGGTGTCATGTGCGTCGCGAGC
CAGTCCCAACAGTGGCGATGTGGTGCACAATCACCTGGGGAAAGACATGC
ACCACATGGTCCCGACGATGGAGGCGGGGAAGACTATTAAGAGGTGGCCA
TGCTTCCACGGGATAATGGACTTGACGGGCGAGACGGACACACAATGTCT
TCGATAGTGAAGCAGCAGCTTGACCCGCAGGAGAAGAATTGCATAAAAGT
GAGGGTGCAGCACAAGGAGATGAGTTACCCTGATGCTTTCGAGGCCTTCA
AAGTAAGCGACATGTTGAAGGGCCATGTGGAGGCAAACGAGATTTCAACT
TCCCTTTTCACCTTCTCCTGGTTCTTAACCAACAAATCATTTCAGATCAT
TTCAGGTCAATAACCCTCGTCGCAACCCCTCACAGAAAACTCATTGTCTG
CAAGCCACGCGGCTGAGGGTAATAGCATGCATATGCACAAGGCATGCCTG
TCTGCTGCAGAATTGCCGGAAGCGGGGCCCGATGAATCTCCTACACTGCC
GGGTGCAAAGGTCTTTCACCACGGCAACCTCTTATCTCTCCCCTCTTTCC
CACATCCAATGAGGTGCAATGGCCTGGGCCATGTCTTTGGTCAAAAAGTA
GCAGGATGTATCGACGAGAAAGTCGTTTCATGCGAGTATGATGTGGCTCA
TATTTTCCAGGGATTCGCAATTATCAAATGTTAGAAAGGTGCCTTTGGTG
TCCAGAATCTTGCGCAGCGAGAATGTCAAGTCTAATTTTTCTTGTACGAG
GAGATTGTGCAGAAGTTCCAGATGGTCGGGTTCGTTGAAATTATCCTCGT
CTAGGTACGCGATGTAGTCGTAGTTTAAAAGCATGGCCATGCTCGCGTAG
ATGCGGTGACCCAGCCATCCGTCGGCACCAGCTGGGAAAGGCAATACCAT
GACATGGAGTGGCATTTTATGATTTAACCTTGGCCATAAGCCTTGACCTT
TGGGAACCAAAGGTCTTATCCCATCATCACTTGAGAATCAAACTTCCTGG
TATAACTCACTCCTGAATCATCA

Coding sequence (CDS) from alignment at scaffold_31:180498..183370+

>mRNA_9644 ID=mRNA_9644|Name=jgi.p|Nanoce1779_2|560152|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at scaffold_31:180498..183370+ (Nannochloropsis oceanica)
ATGATTTTTCTTATCCCTAAGTCCAAGAAGACGACCTTCCAGCTGCTCAA
AATTTCCCCATCTACAGGCTTGGTGCTGTTGGGCATAACATTTTTTTGTG
CTACCTGGTGGCCGGCAAGTAGTGTAACGCCATTGTCAATATCCTCGGAA
GCAGCATCATCGATAACCGATATTCTTACCAAACGGGCTTCGCTAGATGC
CGTACGGCGTATTGCCGCTCAACTTCAAAAGACGGTCACCTCAAGCTGTA
AATTGAGTCGATTTGGTAGTGAGTGGGGCCATCATACCCTGTGCGACTAC
AAGCCAGCGAAATCATGCCAATTTTATTCATTTGGCATATCAAATGATTA
TTCCTTTGACACGGATCTAGCTCAAAAATGGGGCTGCCAGGGTTTCGCAG
CTGATCCTACAGTCATCCATCCCTCTAAGCTACATCCCAACGTGACATTT
CATAGCATTGGTGCCAAAATGCGAACAGCGTTACCCTTTCAAATTGTCAC
ATCTATGCCAGCCCTTCGAAAATGGCTCGGGCACGCCCAAGTGACTGTTC
TCAAGATGGACTGCGAGGGCTGCGAGTACTCATTGGGGGAAGACATTGCA
CTGGAGGACCCAGCATTTTTTACACACGTCGATCAATTTGCGGTTGAGGT
TCACGTGAGTAAACACTGGTTAGAGACGCAGAATGCTCTCTACTCGCTAG
GCTTACTTTTTCATTTTCTGGATGAAGCAGGTCTAAGGCTTCAGCATGCG
GAAATCCTGGGCTGTGATCCAGAAAAGGAAAGGATAGGATGTATGGACGA
GTTGGTTGAAATGGATTACCCATGTGGCCTCGGGAAGAGTTGCCATAATT
ATTTGTTTGCCCGCTAA

Synonyms

Publications