jgi.p|Nanoce1779_2|673878, mRNA_9643 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673878
Unique NamemRNA_9643
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length932
Alignment locationscaffold_31:177000..178405 +

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Properties
Property NameValue
TranscriptId673964
TrackFilteredModels2
ProteinId673878
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:177000..178405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673878gene_9643Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673878mRNA_9643-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9643CDS_9643Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9643 ID=mRNA_9643|Name=jgi.p|Nanoce1779_2|673878|organism=Nannochloropsis oceanica|type=mRNA|length=932bp
ACACATTGGTCATGGCAAACCCGTTCATGTCCAGACTACCGCCCAAACTG
ACTATCTGCCAAGAATCGTGGAACCATCATGCGGAGAAGAGCAAAAAACG
TATGTAGTCCGTGCGGTGTATGTTATTTTTAGTGTTTTTGATTTAATTAT
GCGCTTCTCTGTTGGTTTAGAGATCTAAGAGGGCTGTATGATGATGTTCA
GGAGTGAAATATGCCCCAAACTTTGATGCACTCGAAGTAATGATTGCACG
TAAGAGCTGGGAGAAACAGCAAAAGGATGGGAGAACGGAGGCGGCGAGGG
AGGCGGACAAGGCATCTCCACGCCCCAAGGCGCCATCACTCTTGCGCCAT
CACTCTTGCCATGGCTGCCTCAGGCAGAGAAAGGAGTATAGTGGACGTGT
TAACTGACTGAAGAATCGTTTTGGTATTCGTACGAAGGCCACAAAGAGTG
GAAATGACAGGAGGGCTGGTGCTGGACGAGTCTATGTTTCTGGAGGGAAA
TGTCTTCAATGACGACCGCTCTGATTTCAAGACAAAGAACCACAAATTCC
CTGCAAAGGCACTCCTTCAGAGGAACTTTTGGGTGTCATGTGCGTCGCGA
GCCAGTCCCAACAGTGGCGATGTGGTGCACAATCACCTGGGGAAAGACAT
GCACCACATGGTCCCGACGATGGAGGCGGGGAAGACTATTAAGAGGTGGC
CATGCTTCCACGGGATAATGGACTTGACGGGCGAGACGGACACACAATGT
CTTCGATAGTGAAGCAGCAGCTTGACCCGCAGGAGAAGAATTGCATAAAA
GTGAGGGTGCAGCACAAGGAGATGAGTTACCCTGATGCTTTCGAGGCCTT
CAAAGTAAGCGACATGTTGAAGGGCCATGAGATTGTGCAGAAGTTCCAGA
TGGTCGGGTTCGTTGAAATTATCCTCGTCTAG
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protein sequence of jgi.p|Nanoce1779_2|673878

>mRNA_9643-protein ID=mRNA_9643-protein|Name=jgi.p|Nanoce1779_2|673878|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MTGGLVLDESMFLEGNVFNDDRSDFKTKNHKFPAKALLQRNFWVSCASRA
SPNSGDVVHNHLGKDMHHMVPTMEAGKTIKRWPCFHGIMDLTGETDTQCL
R*
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mRNA from alignment at scaffold_31:177000..178405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9643 ID=mRNA_9643|Name=jgi.p|Nanoce1779_2|673878|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp|location=Sequence derived from alignment at scaffold_31:177000..178405+ (Nannochloropsis oceanica)
ACACATTGGTCATGGCAAACCCGTTCATGTCCAGACTACCGCCCAAACTG
ACTATCTGCCAAGAATCGTGGAACCATCATGCGGAGAAGAGCAAAAAACG
TATGTAGTCCGTGCGGTGTATGTTATTTTTAGTGTTTTTGATTTAATTAT
GCGCTTCTCTGTTGGTTTAGAGATCTAAGAGGGCTGTATGATGATGTTCA
GGAGTGAAATATGCCCCAAACTTTGATGCACTCGAAGTAATGATTGCACG
TAAGAGCTGGGAGAAACAGCAAAAGGATGGGAGAACGGAGGCGGCGAGGG
AGGCGGACAAGGCATCTCCACGCCCCAAGGCGCCATCACTCTTGCGCCAT
CACTCTTGCCATGGCTGCCTCAGGCAGAGAAAGGAGTATAGTGGACGTGT
TAACTGACTGAAGAATCGTTTTGGTATTCGTACGAAGGCCACAAAGAGTG
GAAATGACAGGAGGGCTGGTGCTGGACGAGTCTATGTTTCTGGAGGGAAA
TGTCTTCAATGACGACCGCTCTGATTTCAAGACAAAGAACCACAAATTCC
CTGCAAAGGCACTCCTTCAGAGGAACTTTTGGGTGTCATGTGCGTCGCGA
GCCAGTCCCAACAGTGGCGATGTGGTGCACAATCACCTGGGGAAAGACAT
GCACCACATGGTCCCGACGATGGAGGCGGGGAAGACTATTAAGAGGTGGC
CATGCTTCCACGGGATAATGGACTTGACGGGCGAGACGGACACACAATGT
CTTCGATAGTGAAGCAGCAGCTTGACCCGCAGGAGAAGAATTGCATAAAA
GTGAGGGTGCAGCACAAGGAGATGAGTTACCCTGATGCTTTCGAGGCCTT
CAAAGTAAGCGACATGTTGAAGGGCCATGTGGAGGCAAACGAGATTTCAA
CTTCCCTTTTCACCTTCTCCTGGTTCTTAACCAACAAATCATTTCAGATC
ATTTCAGGTCAATAACCCTCGTCGCAACCCCTCACAGAAAACTCATTGTC
TGCAAGCCACGCGGCTGAGGGTAATAGCATGCATATGCACAAGGCATGCC
TGTCTGCTGCAGAATTGCCGGAAGCGGGGCCCGATGAATCTCCTACACTG
CCGGGTGCAAAGGTCTTTCACCACGGCAACCTCTTATCTCTCCCCTCTTT
CCCACATCCAATGAGGTGCAATGGCCTGGGCCATGTCTTTGGTCAAAAAG
TAGCAGGATGTATCGACGAGAAAGTCGTTTCATGCGAGTATGATGTGGCT
CATATTTTCCAGGGATTCGCAATTATCAAATGTTAGAAAGGTGCCTTTGG
TGTCCAGAATCTTGCGCAGCGAGAATGTCAAGTCTAATTTTTCTTGTACG
AGGAGATTGTGCAGAAGTTCCAGATGGTCGGGTTCGTTGAAATTATCCTC
GTCTAG
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Coding sequence (CDS) from alignment at scaffold_31:177000..178405+

>mRNA_9643 ID=mRNA_9643|Name=jgi.p|Nanoce1779_2|673878|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_31:177000..178405+ (Nannochloropsis oceanica)
ATGACAGGAGGGCTGGTGCTGGACGAGTCTATGTTTCTGGAGGGAAATGT
CTTCAATGACGACCGCTCTGATTTCAAGACAAAGAACCACAAATTCCCTG
CAAAGGCACTCCTTCAGAGGAACTTTTGGGTGTCATGTGCGTCGCGAGCC
AGTCCCAACAGTGGCGATGTGGTGCACAATCACCTGGGGAAAGACATGCA
CCACATGGTCCCGACGATGGAGGCGGGGAAGACTATTAAGAGGTGGCCAT
GCTTCCACGGGATAATGGACTTGACGGGCGAGACGGACACACAATGTCTT
CGATAG
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Synonyms
Publications