jgi.p|Nanoce1779_2|258293, mRNA_9640 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|258293
Unique NamemRNA_9640
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length719
Alignment locationscaffold_31:162547..163478 -

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Properties
Property NameValue
TranscriptId258379
TrackFilteredModels2
ProteinId258293
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:162547..163478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|258293gene_9640Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|258293mRNA_9640-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9640CDS_9640Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9640 ID=mRNA_9640|Name=jgi.p|Nanoce1779_2|258293|organism=Nannochloropsis oceanica|type=mRNA|length=719bp
CTCTCACCCAGTCCAAAATTCAGTCGTTTCTTCCTTTTTATTCATCCCTG
ATGGGTGTTGGCCTCCGAAAGCCCCTAAGGAATGGATAGCAGGGGGGGTA
TGCCCCGAAGGCAACACGGAATGCTACACCACTTCCAGATCTCCCTCAAC
AATTCTTCAAAAATAGATTTCTCGCGTGCCATTGACGTCTCGATCGCCTT
TGCACAAACAAGATCATTACTTGAAAAATTTGTTTCCACCCAATTTGGCC
GTCATAGCCCACCCCCGCTCGAAGGTGGAGCCAAAGGTGATGCGCTTTTC
CTGGATAGCAGGAACGAATTTCTGCAGGTGCGGGAATTCGCCTTCAGCTG
GATGCCCGTCTCCGCCTCCCACTCCTCGCTGTCGTGGTACTATTTGTGCT
TGACCGGACAATTGAAAACATCCTGGGAAGTACCGAGGTGGTTACCCTTC
TTCCTGATCCTGCTCTCGCTGTGCTGGACAGGGCAGCCCCTCATGTACAC
TTGTCCTTGCATTCCGGGCACGTCCTGTCGTAGCAGGCCCAGGAGCGCAT
GCCGTCCGTATTCTTCCTGCACATGGTGAGCTCCCCCAGCTGCTTGACCG
CAGTCATCCCGTCGTTCTGCCCCATAAAGGGATGGACGCTCCGACACTTC
CCATCCACGCAATGGTCGCAGAGACATCCCCCCTTCCCGCCGCAATGCTG
GTGGAGGACGCTGCTCCTT
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protein sequence of jgi.p|Nanoce1779_2|258293

>mRNA_9640-protein ID=mRNA_9640-protein|Name=jgi.p|Nanoce1779_2|258293|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MDSRGGMPRRQHGMLHHFQISLNNSSKIDFSRAIDVSIAFAQTRSLLEKF
VSTQFGRHSPPPLEGGAKGDALFLDSRNEFLQVREFAFSWMPVSASHSSL
SWYYLCLTGQLKTSWEVPRWLPFFLILLSLCWTGQPLMYTCPCIPGTSCR
SRPRSACRPYSSCTW*
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mRNA from alignment at scaffold_31:162547..163478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9640 ID=mRNA_9640|Name=jgi.p|Nanoce1779_2|258293|organism=Nannochloropsis oceanica|type=mRNA|length=932bp|location=Sequence derived from alignment at scaffold_31:162547..163478- (Nannochloropsis oceanica)
CTCTCACCCAGTCCAAAATTCAGTCGTTTCTTCCTTTTTATTCATCCCTG
ATGGGTGTTGGCCTCCGAAAGCCCCTAAGGAATGGATAGCAGGGGGGGTA
TGCCCCGAAGGCAACACGGAATGCTACACCACTTCCAGATCTCCCTCAAC
AATTCTTCAAAAATAGATTTCTCGCGTGCCATTGACGTCTCGATCGCCTT
TGCACAAACAAGATCATTACTTGAAAAATTTGTTTCCACCCAATTTGGCC
GTCATAGCCCACCCCCGCTCGAAGGTGGAGCCAAAGGTGATGCGCTTTTC
CTGGATAGCAGGAACGAATTTCTGCAGGTCTGTCCACTATTCGTTTCCCT
CCTCTATGGTAAGTCCGACGCCACAAGCTCGCACTTATCATATTCCATGT
TTCTGCAACGCTGGCACGTGCAGGAGGTGGGAAATATCAAAACGTACCCA
CCGCACGTCACAAAGCTATGATGAGACTTGATCCCCGCCATATCCCTCAC
CACATCCTTGTCCACACCCACCAACTCCACAAATACGAAGGTGCGGGAAT
TCGCCTTCAGCTGGATGCCCGTCTCCGCCTCCCACTCCTCGCTGTCGTGG
TACTATTTGTGCTTGACCGGACAATTGAAAACATCCTGGGAAGTACCGAG
GTGGTTACCCTTCTTCCTGATCCTGCTCTCGCTGTGCTGGACAGGGCAGC
CCCTCATGTACACTTGTCCTTGCATTCCGGGCACGTCCTGTCGTAGCAGG
CCCAGGAGCGCATGCCGTCCGTATTCTTCCTGCACATGGTGAGCTCCCCC
AGCTGCTTGACCGCAGTCATCCCGTCGTTCTGCCCCATAAAGGGATGGAC
GCTCCGACACTTCCCATCCACGCAATGGTCGCAGAGACATCCCCCCTTCC
CGCCGCAATGCTGGTGGAGGACGCTGCTCCTT
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Coding sequence (CDS) from alignment at scaffold_31:162547..163478-

>mRNA_9640 ID=mRNA_9640|Name=jgi.p|Nanoce1779_2|258293|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_31:162547..163478- (Nannochloropsis oceanica)
GTGCGGGAATTCGCCTTCAGCTGGATGCCCGTCTCCGCCTCCCACTCCTC
GCTGTCGTGGTACTATTTGTGCTTGACCGGACAATTGAAAACATCCTGGG
AAGTACCGAGGTGGTTACCCTTCTTCCTGATCCTGCTCTCGCTGTGCTGG
ACAGGGCAGCCCCTCATGTACACTTGTCCTTGCATTCCGGGCACGTCCTG
TCGTAGCAGGCCCAGGAGCGCATGCCGTCCGTATTCTTCCTGCACATGGT
GAATGGATAGCAGGGGGGGTATGCCCCGAAGGCAACACGGAATGCTACAC
CACTTCCAGATCTCCCTCAACAATTCTTCAAAAATAGATTTCTCGCGTGC
CATTGACGTCTCGATCGCCTTTGCACAAACAAGATCATTACTTGAAAAAT
TTGTTTCCACCCAATTTGGCCGTCATAGCCCACCCCCGCTCGAAGGTGGA
GCCAAAGGTGATGCGCTTTTCCTGGATAGCAGGAACGAATTTCTGCAGGT
GCGGGAATTCGCCTTCAGCTGGATGCCCGTCTCCGCCTCCCACTCCTCGC
TGTCGTGGTACTATTTGTGCTTGACCGGACAATTGAAAACATCCTGGGAA
GTACCGAGGTGGTTACCCTTCTTCCTGATCCTGCTCTCGCTGTGCTGGAC
AGGGCAGCCCCTCATGTACACTTGTCCTTGCATTCCGGGCACGTCCTGTC
GTAGCAGGCCCAGGAGCGCATGCCGTCCGTATTCTTCCTGCACATGGTGA
ATGGATAGCAGGGGGGGTATGCCCCGAAGGCAACACGGAATGCTACACCA
CTTCCAGATCTCCCTCAACAATTCTTCAAAAATAGATTTCTCGCGTGCCA
TTGACGTCTCGATCGCCTTTGCACAAACAAGATCATTACTTGAAAAATTT
GTTTCCACCCAATTTGGCCGTCATAGCCCACCCCCGCTCGAAGGTGGAGC
CAAAGGTGATGCGCTTTTCCTGGATAGCAGGAACGAATTTCTGCAG
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Synonyms
Publications