jgi.p|Nanoce1779_2|574812, mRNA_964 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574812
Unique Name	mRNA_964
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2589
Alignment location	scaffold_2:868664..871481 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574898
Track	FilteredModels2
ProteinId	574812

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:868664..871481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574812	gene_964	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574812	mRNA_964-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_964	CDS_964	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:868664..871481+
coding sequence from alignment at scaffold_2:868664..871481+

mRNA sequence

>mRNA_964 ID=mRNA_964|Name=jgi.p|Nanoce1779_2|574812|organism=Nannochloropsis oceanica|type=mRNA|length=2589bp
AGACAGGAACGCAGCCTTGCTGGACCAACCTTCCCAACATACTGCTGTCA
TCAGACTGGTTCCAAAGAGTCCACCCTCGAGTCCTCCCCCACACGACCAA
CTAGACAGGCCGGGCTGCATGAGACGCGACAAATAATGACGCCGGAGGAC
GCAGCTACCACCACGGCCGCCCGATGCACGGCTGCCACGGAAGAGCAAGA
AATTACCAAACTAACCGGAAGCCTCGCGACCCTCAGCACGGCATCTTCCT
CGGAGAATAGGAATGCGATGAAGCAATTTCCAGATACCACACAAGAGGAC
AACCGCGAGCATGCCCACCAGAAGCACCAGCAGCGCCAGCAGCAACAGCA
CCCGCAACAACAACAGTACGAGCAGCATCAGCAAGAGTACAATCATCAGC
TGCACGATCATCAGCAGCAGTATCAGCATCAATACGAAGAGGGGCACGAC
GGCGGGCTGGCGGCGTATAAGGAAACGCAAGTAGAGCCGAAAGAGGACAG
TATTCTATTCATCGGTGACTTGGCTCGTGGCCTCACCGAGGCGGACTTGG
TGCAAGCCTTTGAATGTGTGGGCAAGGTGCAAATGGTGGACATCAAACGG
GACAAGCTGACCATGCGCAATCTGGGATATGGCTTTGTGCAAATGAGCAC
GCGGGAGGAAGCCGCGGCCGCGAAAAAGCGCATGCAGGACGTGGAAATCC
AAGGACGACGCATTCGCGTCGGATGGGCGCAGCGCAACACGGCTTTATTT
ATAGGTGATCTGGACGCGAGCACCACTATCGACGACCTCCACCGCGCCTT
CGGTCTCTTTGGACCTTTGTACGAAGACCAGACCTACCTTCGACAGGGGA
AATACGGCAAGTATGGTTCGTGCAAGTTTGCGCAGCGCCAAGACGCAGAA
ACTGCCCGCCGGGAGATGCATGGTCGGATCCTTGGTGCTGGTACGTATCC
GATTCGTGTCGTTTGGCACCATCCCCAGACTAGCAGCACAGGCAGCGGTG
GCCCCTCGGCGTCCACTTTCCACCACCACTCCCACGGGCTGCAGCATGTC
CCGCCTCCACCCCCCCACGGCGTGTCCAGTCGGCCTTACTCCGTACATGT
ACAGTTTGAGGCCGAAGTCATCACCACGATTACAGAGGGCTTGCTCCACA
GCTTCTTTGCGCCGTTTGGAGAAGTGATTGCCGTGATCCTCCCGCAGGGT
CCTGGCATACTCTCATCCGAAGGTGAGAGGACGAGCGGCACCTGTCGTCG
TGGGTATGGTTTTGTGCATTTCAGTGGTTCGTCGCAGGGGCGAAGATGTG
CGATTGAGGCTATTCGGACGTTGCAAGGGGAAATCTCACAAGGCATTCGA
TTGCAATGCGCTTTTAGTAAGAAACCCGGTGCGCCCGTTCGTCTTGGGGA
AGGGGTTGCATTGAGCAAAAGCCACGGGAGCGGGGTCATGCACATGGATC
GTGGAGTGTCCTCTTCTCCACCGACGATGATGCAGCATTATGCCCCTTCG
TGTCGCCCTCTGCACCACCTTCACCCAGATGCCGACGGTGGGGTGGAATA
CATGCAGCACACACACCACCCCTCCACGCACCAAGACATGATACCGCACT
ACTTCTACGATCTGGATCACCAGCACGGCGGTGCAGGATGGCAAATGGTT
CCTCCTTTCCTATCGTCCACTTCCTCTTCGCTGCCCCCTTCCTCTGCATC
AACGGCCACTTCCGGCCCTCATCTCAAGCCTTATCAACAGCTACGGTACC
AGCAGCCGCCGCTTCATTACGACTACCACCCGCAGCACTATCAGCCACAA
GAGGCTTACTTTCACGGTCAACCTCCTCCTCATAATCAAATGCCGCCATA
TGACATGCCCGACCATGCCTACTACTACAGCCCGCCGCATTCTTTCACTG
TGCATCTTCCTCCTCCTTATCTTCTCCCGCCTTCAGGACAGTGCTTAGAC
GGGGGAAGGGTTCATAAAAGTATGGGTAGCAACAGCGAAAGCAATATGGG
TGGGCCGGGAAATGATCTCGAGTATCACGAAGGTACTGGGTACAGACATG
ATTCGCACGGGGACCCACAAGGAACGGGTATGACTTATCCGCCGACTAGG
GCCGTGCATGGAGGGGCGCGATAGTATCGCTTGTGGTGATATGCGGCTTT
CCCCCCGTAAGCAGTGCTAATTGCGTGTGTGATTTCTATACTTGATCGAC
GGAGGGGGAGGAAGAGCGGGGGAAAAGAGGGTAAGGTTTAGGGAAGTAGA
AAAAAAGGAGAGGGGATTCTATGATTGGTCGAAACGAATGACTTATTACA
GGGAAAATACAATACATGGACGGAGCAAAGACAGTGTGGGGCTAAAAGGG
AGTATTGGTCTTGAGAATCGGAGGGAACCAGAGCGAGGGGGTAGGGAGGT
TGGAGGGAAAAATAGAAAGAAGGAATGAAACTGTGGTAGTGTGCTACCAT
GTCTATTGATCAACATTTTCCTATGCATGTGGATCGCATAGCTTTGTCCC
TTTGGCGCTGGAAGGGAAGCAGGAAAGCAAATTTTAAAACGAAATACACC
ATCAATCAACCTCCAGAATACCCGGAGCGATTTCCATCC

protein sequence of jgi.p|Nanoce1779_2|574812

>mRNA_964-protein ID=mRNA_964-protein|Name=jgi.p|Nanoce1779_2|574812|organism=Nannochloropsis oceanica|type=polypeptide|length=663bp
MTPEDAATTTAARCTAATEEQEITKLTGSLATLSTASSSENRNAMKQFPD
TTQEDNREHAHQKHQQRQQQQHPQQQQYEQHQQEYNHQLHDHQQQYQHQY
EEGHDGGLAAYKETQVEPKEDSILFIGDLARGLTEADLVQAFECVGKVQM
VDIKRDKLTMRNLGYGFVQMSTREEAAAAKKRMQDVEIQGRRIRVGWAQR
NTALFIGDLDASTTIDDLHRAFGLFGPLYEDQTYLRQGKYGKYGSCKFAQ
RQDAETARREMHGRILGAGTYPIRVVWHHPQTSSTGSGGPSASTFHHHSH
GLQHVPPPPPHGVSSRPYSVHVQFEAEVITTITEGLLHSFFAPFGEVIAV
ILPQGPGILSSEGERTSGTCRRGYGFVHFSGSSQGRRCAIEAIRTLQGEI
SQGIRLQCAFSKKPGAPVRLGEGVALSKSHGSGVMHMDRGVSSSPPTMMQ
HYAPSCRPLHHLHPDADGGVEYMQHTHHPSTHQDMIPHYFYDLDHQHGGA
GWQMVPPFLSSTSSSLPPSSASTATSGPHLKPYQQLRYQQPPLHYDYHPQ
HYQPQEAYFHGQPPPHNQMPPYDMPDHAYYYSPPHSFTVHLPPPYLLPPS
GQCLDGGRVHKSMGSNSESNMGGPGNDLEYHEGTGYRHDSHGDPQGTGMT
YPPTRAVHGGAR*

mRNA from alignment at scaffold_2:868664..871481+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_964 ID=mRNA_964|Name=jgi.p|Nanoce1779_2|574812|organism=Nannochloropsis oceanica|type=mRNA|length=2818bp|location=Sequence derived from alignment at scaffold_2:868664..871481+ (Nannochloropsis oceanica)
AGACAGGAACGCAGCCTTGCTGGTGAGATGTGATGTGGAAGCGAGAGGCT
AGGGCTTGGTCCGTGTCTCACCCAAGCTCATGGTACCTGTTGACAACATC
TTTTATTCCATATATTTCCCTCCAAAGGACCAACCTTCCCAACATACTGC
TGTCATCAGACTGGTTCCAAAGAGTCCACCCTCGAGTCCTCCCCCACACG
ACCAACTAGACAGGCCGGGCTGCATGAGGTACACGAGTCTAGCCGTGCTT
CGGGAAATCACTGTAGAGCATAGCGATTCAATTGCGGGAATAACATCTAG
TCATTATCCGCCTACTCTCTATTCTACCCAAAACACCACTCCCATTTAAT
AGACGCGACAAATAATGACGCCGGAGGACGCAGCTACCACCACGGCCGCC
CGATGCACGGCTGCCACGGAAGAGCAAGAAATTACCAAACTAACCGGAAG
CCTCGCGACCCTCAGCACGGCATCTTCCTCGGAGAATAGGAATGCGATGA
AGCAATTTCCAGATACCACACAAGAGGACAACCGCGAGCATGCCCACCAG
AAGCACCAGCAGCGCCAGCAGCAACAGCACCCGCAACAACAACAGTACGA
GCAGCATCAGCAAGAGTACAATCATCAGCTGCACGATCATCAGCAGCAGT
ATCAGCATCAATACGAAGAGGGGCACGACGGCGGGCTGGCGGCGTATAAG
GAAACGCAAGTAGAGCCGAAAGAGGACAGTATTCTATTCATCGGTGACTT
GGCTCGTGGCCTCACCGAGGCGGACTTGGTGCAAGCCTTTGAATGTGTGG
GCAAGGTGCAAATGGTGGACATCAAACGGGACAAGCTGACCATGCGCAAT
CTGGGATATGGCTTTGTGCAAATGAGCACGCGGGAGGAAGCCGCGGCCGC
GAAAAAGCGCATGCAGGACGTGGAAATCCAAGGACGACGCATTCGCGTCG
GATGGGCGCAGCGCAACACGGCTTTATTTATAGGTGATCTGGACGCGAGC
ACCACTATCGACGACCTCCACCGCGCCTTCGGTCTCTTTGGACCTTTGTA
CGAAGACCAGACCTACCTTCGACAGGGGAAATACGGCAAGTATGGTTCGT
GCAAGTTTGCGCAGCGCCAAGACGCAGAAACTGCCCGCCGGGAGATGCAT
GGTCGGATCCTTGGTGCTGGTACGTATCCGATTCGTGTCGTTTGGCACCA
TCCCCAGACTAGCAGCACAGGCAGCGGTGGCCCCTCGGCGTCCACTTTCC
ACCACCACTCCCACGGGCTGCAGCATGTCCCGCCTCCACCCCCCCACGGC
GTGTCCAGTCGGCCTTACTCCGTACATGTACAGTTTGAGGCCGAAGTCAT
CACCACGATTACAGAGGGCTTGCTCCACAGCTTCTTTGCGCCGTTTGGAG
AAGTGATTGCCGTGATCCTCCCGCAGGGTCCTGGCATACTCTCATCCGAA
GGTGAGAGGACGAGCGGCACCTGTCGTCGTGGGTATGGTTTTGTGCATTT
CAGTGGTTCGTCGCAGGGGCGAAGATGTGCGATTGAGGCTATTCGGACGT
TGCAAGGGGAAATCTCACAAGGCATTCGATTGCAATGCGCTTTTAGTAAG
AAACCCGGTGCGCCCGTTCGTCTTGGGGAAGGGGTTGCATTGAGCAAAAG
CCACGGGAGCGGGGTCATGCACATGGATCGTGGAGTGTCCTCTTCTCCAC
CGACGATGATGCAGCATTATGCCCCTTCGTGTCGCCCTCTGCACCACCTT
CACCCAGATGCCGACGGTGGGGTGGAATACATGCAGCACACACACCACCC
CTCCACGCACCAAGACATGATACCGCACTACTTCTACGATCTGGATCACC
AGCACGGCGGTGCAGGATGGCAAATGGTTCCTCCTTTCCTATCGTCCACT
TCCTCTTCGCTGCCCCCTTCCTCTGCATCAACGGCCACTTCCGGCCCTCA
TCTCAAGCCTTATCAACAGCTACGGTACCAGCAGCCGCCGCTTCATTACG
ACTACCACCCGCAGCACTATCAGCCACAAGAGGCTTACTTTCACGGTCAA
CCTCCTCCTCATAATCAAATGCCGCCATATGACATGCCCGACCATGCCTA
CTACTACAGCCCGCCGCATTCTTTCACTGTGCATCTTCCTCCTCCTTATC
TTCTCCCGCCTTCAGGACAGTGCTTAGACGGGGGAAGGGTTCATAAAAGT
ATGGGTAGCAACAGCGAAAGCAATATGGGTGGGCCGGGAAATGATCTCGA
GTATCACGAAGGTACTGGGTACAGACATGATTCGCACGGGGACCCACAAG
GAACGGGTATGACTTATCCGCCGACTAGGGCCGTGCATGGAGGGGCGCGA
TAGTATCGCTTGTGGTGATATGCGGCTTTCCCCCCGTAAGCAGTGCTAAT
TGCGTGTGTGATTTCTATACTTGATCGACGGAGGGGGAGGAAGAGCGGGG
GAAAAGAGGGTAAGGTTTAGGGAAGTAGAAAAAAAGGAGAGGGGATTCTA
TGATTGGTCGAAACGAATGACTTATTACAGGGAAAATACAATACATGGAC
GGAGCAAAGACAGTGTGGGGCTAAAAGGGAGTATTGGTCTTGAGAATCGG
AGGGAACCAGAGCGAGGGGGTAGGGAGGTTGGAGGGAAAAATAGAAAGAA
GGAATGAAACTGTGGTAGTGTGCTACCATGTCTATTGATCAACATTTTCC
TATGCATGTGGATCGCATAGCTTTGTCCCTTTGGCGCTGGAAGGGAAGCA
GGAAAGCAAATTTTAAAACGAAATACACCATCAATCAACCTCCAGAATAC
CCGGAGCGATTTCCATCC

Coding sequence (CDS) from alignment at scaffold_2:868664..871481+

>mRNA_964 ID=mRNA_964|Name=jgi.p|Nanoce1779_2|574812|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_2:868664..871481+ (Nannochloropsis oceanica)
ATGACGCCGGAGGACGCAGCTACCACCACGGCCGCCCGATGCACGGCTGC
CACGGAAGAGCAAGAAATTACCAAACTAACCGGAAGCCTCGCGACCCTCA
GCACGGCATCTTCCTCGGAGAATAGGAATGCGATGAAGCAATTTCCAGAT
ACCACACAAGAGGACAACCGCGAGCATGCCCACCAGAAGCACCAGCAGCG
CCAGCAGCAACAGCACCCGCAACAACAACAGTACGAGCAGCATCAGCAAG
AGTACAATCATCAGCTGCACGATCATCAGCAGCAGTATCAGCATCAATAC
GAAGAGGGGCACGACGGCGGGCTGGCGGCGTATAAGGAAACGCAAGTAGA
GCCGAAAGAGGACAGTATTCTATTCATCGGTGACTTGGCTCGTGGCCTCA
CCGAGGCGGACTTGGTGCAAGCCTTTGAATGTGTGGGCAAGGTGCAAATG
GTGGACATCAAACGGGACAAGCTGACCATGCGCAATCTGGGATATGGCTT
TGTGCAAATGAGCACGCGGGAGGAAGCCGCGGCCGCGAAAAAGCGCATGC
AGGACGTGGAAATCCAAGGACGACGCATTCGCGTCGGATGGGCGCAGCGC
AACACGGCTTTATTTATAGGTGATCTGGACGCGAGCACCACTATCGACGA
CCTCCACCGCGCCTTCGGTCTCTTTGGACCTTTGTACGAAGACCAGACCT
ACCTTCGACAGGGGAAATACGGCAAGTATGGTTCGTGCAAGTTTGCGCAG
CGCCAAGACGCAGAAACTGCCCGCCGGGAGATGCATGGTCGGATCCTTGG
TGCTGGTACGTATCCGATTCGTGTCGTTTGGCACCATCCCCAGACTAGCA
GCACAGGCAGCGGTGGCCCCTCGGCGTCCACTTTCCACCACCACTCCCAC
GGGCTGCAGCATGTCCCGCCTCCACCCCCCCACGGCGTGTCCAGTCGGCC
TTACTCCGTACATGTACAGTTTGAGGCCGAAGTCATCACCACGATTACAG
AGGGCTTGCTCCACAGCTTCTTTGCGCCGTTTGGAGAAGTGATTGCCGTG
ATCCTCCCGCAGGGTCCTGGCATACTCTCATCCGAAGGTGAGAGGACGAG
CGGCACCTGTCGTCGTGGGTATGGTTTTGTGCATTTCAGTGGTTCGTCGC
AGGGGCGAAGATGTGCGATTGAGGCTATTCGGACGTTGCAAGGGGAAATC
TCACAAGGCATTCGATTGCAATGCGCTTTTAGTAAGAAACCCGGTGCGCC
CGTTCGTCTTGGGGAAGGGGTTGCATTGAGCAAAAGCCACGGGAGCGGGG
TCATGCACATGGATCGTGGAGTGTCCTCTTCTCCACCGACGATGATGCAG
CATTATGCCCCTTCGTGTCGCCCTCTGCACCACCTTCACCCAGATGCCGA
CGGTGGGGTGGAATACATGCAGCACACACACCACCCCTCCACGCACCAAG
ACATGATACCGCACTACTTCTACGATCTGGATCACCAGCACGGCGGTGCA
GGATGGCAAATGGTTCCTCCTTTCCTATCGTCCACTTCCTCTTCGCTGCC
CCCTTCCTCTGCATCAACGGCCACTTCCGGCCCTCATCTCAAGCCTTATC
AACAGCTACGGTACCAGCAGCCGCCGCTTCATTACGACTACCACCCGCAG
CACTATCAGCCACAAGAGGCTTACTTTCACGGTCAACCTCCTCCTCATAA
TCAAATGCCGCCATATGACATGCCCGACCATGCCTACTACTACAGCCCGC
CGCATTCTTTCACTGTGCATCTTCCTCCTCCTTATCTTCTCCCGCCTTCA
GGACAGTGCTTAGACGGGGGAAGGGTTCATAAAAGTATGGGTAGCAACAG
CGAAAGCAATATGGGTGGGCCGGGAAATGATCTCGAGTATCACGAAGGTA
CTGGGTACAGACATGATTCGCACGGGGACCCACAAGGAACGGGTATGACT
TATCCGCCGACTAGGGCCGTGCATGGAGGGGCGCGATAG

Synonyms

Publications