jgi.p|Nanoce1779_2|253436, mRNA_9639 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|253436
Unique Name	mRNA_9639
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3031
Alignment location	scaffold_31:158797..161827 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	253522
Track	FilteredModels2
ProteinId	253436

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:158797..161827 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|253436	gene_9639	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|253436	mRNA_9639-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9639	CDS_9639	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:158797..161827+
coding sequence from alignment at scaffold_31:158797..161827+

mRNA sequence

>mRNA_9639 ID=mRNA_9639|Name=jgi.p|Nanoce1779_2|253436|organism=Nannochloropsis oceanica|type=mRNA|length=3031bp
CACCATAAATATAAATGCAGATTTGACGAATCCACTTTTAAAATTGTTTT
TATTTTCAAAGAAACACTGACCCCCCAATCTCGTTATGCAAAATTGTCTG
AAACTGAAACATTTAAAGGTCATATTATATGACCTTTAAATGTTTCAAGA
ATTAAATAATATGACTCATATTATTTAATTCTTCCCTTCACTTCCATCCT
GAGAATCCCCCACAGAATATTCGAAACTGAACGAGATCGACTATATTCTA
TTTGGAGTCCAGATACGTTGGGCTATGCAATATTTGCATTATCTGCAATA
TTTGCATGTATATTATATAAATCAAAATTCATGTGTCATTAGATGATGGC
AAAGTACTCTCATACTGAGCATTTTGACTATTTATGCAGTATAGAAACCT
GGTAAGATTCATCTTCATCCTAGTTGTCAAACTCACGCTGATGACAAACT
CGTAACAATTCTAAACTAGTGATGGCTTCGAGGCGAGCATGGCGTCGTCG
ATATCCCCAATACCAAGTCCTCAAGATACCAGTATTATGCACTGTTATTA
CGGTGGCGACTTTTTTTTTCTGCAATTTCAGCTTTTCAATATCATTTCAA
AATAGGATCGGTAGTGAGCTATCTCCATTGTCCAAATTGCGTTTAGATTT
CACGTACACAGATCAGGTCTTGAATGCATGCAAAGATATTGACCCGTGTA
TTACTATTCATGTATTTGGATATTGTCGACTTGATGCGACACGAAATTTG
CTCAAAATGCTTTCCGAAGCCAATTATTCAACTTATTTCCATGCAATCCC
CTTGATAATTCATTTGGACCGTCCTATCGAGGAAGGAATCACTGAAAAAG
TGTTACAAGATACTGAGACCATAGTTGATCACGTAAAAGACATGTCGTGG
CCACACGGGCCAAAAATCCTTGACTTGAAACGCCATCACCACGGTCTTAA
GCGCTCTTGGTTATCTGCCTGGCCCTATCCTCGATCTAACGATATTATGA
TTGCTTTTGAGGACGATATGGTGTTGTCGCCAGAATACTTTGTCTGGCTC
ATGAAGGTCTTCGAAGAGTACAAGTTGTGGAAAGCTCCGACTCGGGATCC
TCTCTTGCTTGGTATATCTCTAGCTCCAGTGCTTATAGATGAGGTTGGGG
ATCCGCCTCATAAATGGGAACCATATGAGGAAATGCCACCTGAAAGGTAC
CCACTATATCTTCATGGGTTGCCTTCTTCTTGGGGCGCTGTTTATTTTGG
AAACCAATGGAAAGAATTCCTACGATTTGTAGATGTACGTGGTCGGTCAC
CATTTTTTTCCAATGTCGATGACAGCAACAGAAAAAAAGGGGAAAGTGAC
GACCGGCAGGATGACCCAAATCTATGGCTTCCTCAGAGTAAGACAAACTT
GTGGCGCAATTCCTGGAAACGCTTCATGATTGATTTTGCATACGGGCGCG
GATGCTACATGCTGCACCCAAATATGGGGCCATCTCTAGGGCTTGCTACT
TCAACATTCCTCGCGGGCGAGCATTTCGGTGACGGGTCATCAAAAAACCC
GCGGCAAGGGACGTTGGTCAATAGGACCCAACTTCGCCTAGAGCTGCCCT
TTCCTCCCTATATGGATTTACCACTAGTAGACATATACAGTAGAGCCATT
GACAGCATTATCATGGCCCAGAAAGGTGATAGATTCGTCAGACGCATATC
GGCCTTGAGTCCTTCCCACAGTGTGCTAGCTTCGCTGTGGAGTCGTCCCT
GTGTACTGGATCAAAAACATGCACCTACACAAAAATTCCCCCTGGGCGGC
CAGTCTAAGATGCTTCTGGTCATTCCTGAGGGCAATATTCATCAACAAAT
GCTGACTCTTACTTGTGGATCAATAATAGCAACAACACTGGAACGTTCAC
TGGTAATGCCGCCCGTACAAGTGCATGGGTTGAATCATAGCGACCCGAAA
GGCGGCCGTTGGACGCCTTTGGCATCCTTAATTGATCCAGTACAGCTTCA
AGCAATATTTACCACACTTGATATTGTGTACCTAAGTATGAATGACTTGT
TTCAGTGGGATCCAGCTCGCATTTCAGTCTTCGATTCAAGAATCGAAAAT
GAGAATGTATTTATTTCTTCCGCTGGTTGGGGAGACGTCCCCCGATTTCT
CTGGAACTCCACAAGTCGACATATGCCCCCTCTTTGGAACGAAAGGCATG
TATATGCGGCATTTGGAACATGTTCAGATGATATGCTGGTGCTTTCTAAA
CTGCCTGTATCTTTGATCACAGAGTTGAAGAAATCAGAGACCTTCGATCG
CATCAATCGAGCGCTGATGACTTTAACAGATCAGTTGCCTTGAGCACTTG
AGATCCGGAAAATATGTATGTCTTTGACAAGAACCGCCGACTGACTTGAC
TGAACCATGCTTCTACCAATGTGTGATGAAACATTTTATAAACAACTTCA
TGAATTTCAATGATACCTTACCTCCGTCGGATGATAGACACAATTGTGCA
GCACTCAAGGCGCTATACAACCTTAAAGCCCATGAGTTTCTGGGATGACG
ATCTAAAGATTTCATAGTGAAACCACGTACCGCTTGTAGCACGGATGGAA
GTATAAATATACTCAGTGCGCCGTACAATGGCCTCCCCCGAAAAAATGCC
CTTCATCCATCTGCATATTATGTAAGGCTTCCTCCCATTATTTTTGCCTT
GCTTTATCCTTCTGCATCCAAAATATGGCCTTCAAGCGGCGTGTGAGCTT
CGTTCTCGATATATGTCCATATATCGAGAACGAAATTACCTCATCGTGCT
CCGCACTTTTGTGTACGAAGTCACCGGAAACATTCACCGCCTTAATAAAT
TATATCTATAGCAACCGTTTACCTGTCAGGTTTGCTGGCAAATGTTGTTA
TACAATACAAATTGACAAATAAACTCGTGCTTAGAAGGATCTAAACGCTC
AAGATCAGCGCTCATACGAATGAGGGGGGGGGACGCTCAGGAGACGTTCC
TGTCTCACGGGCCTTTTCTCGACCTCACGCA

protein sequence of jgi.p|Nanoce1779_2|253436

>mRNA_9639-protein ID=mRNA_9639-protein|Name=jgi.p|Nanoce1779_2|253436|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MASRRAWRRRYPQYQVLKIPVLCTVITVATFFFCNFSFSISFQNRIGSEL
SPLSKLRLDFTYTDQVLNACKDIDPCITIHVFGYCRLDATRNLLKMLSEA
NYSTYFHAIPLIIHLDRPIEEGITEKVLQDTETIVDHVKDMSWPHGPKIL
DLKRHHHGLKRSWLSAWPYPRSNDIMIAFEDDMVLSPEYFVWLMKVFEEY
KLWKAPTRDPLLLGISLAPVLIDEVGDPPHKWEPYEEMPPERYPLYLHGL
PSSWGAVYFGNQWKEFLRFVDVRGRSPFFSNVDDSNRKKGESDDRQDDPN
LWLPQSKTNLWRNSWKRFMIDFAYGRGCYMLHPNMGPSLGLATSTFLAGE
HFGDGSSKNPRQGTLVNRTQLRLELPFPPYMDLPLVDIYSRAIDSIIMAQ
KGDRFVRRISALSPSHSVLASLWSRPCVLDQKHAPTQKFPLGGQSKMLLV
IPEGNIHQQMLTLTCGSIIATTLERSLVMPPVQVHGLNHSDPKGGRWTPL
ASLIDPVQLQAIFTTLDIVYLSMNDLFQWDPARISVFDSRIENENVFISS
AGWGDVPRFLWNSTSRHMPPLWNERHVYAAFGTCSDDMLVLSKLPVSLIT
ELKKSETFDRINRALMTLTDQLP*

mRNA from alignment at scaffold_31:158797..161827+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9639 ID=mRNA_9639|Name=jgi.p|Nanoce1779_2|253436|organism=Nannochloropsis oceanica|type=mRNA|length=3031bp|location=Sequence derived from alignment at scaffold_31:158797..161827+ (Nannochloropsis oceanica)
CACCATAAATATAAATGCAGATTTGACGAATCCACTTTTAAAATTGTTTT
TATTTTCAAAGAAACACTGACCCCCCAATCTCGTTATGCAAAATTGTCTG
AAACTGAAACATTTAAAGGTCATATTATATGACCTTTAAATGTTTCAAGA
ATTAAATAATATGACTCATATTATTTAATTCTTCCCTTCACTTCCATCCT
GAGAATCCCCCACAGAATATTCGAAACTGAACGAGATCGACTATATTCTA
TTTGGAGTCCAGATACGTTGGGCTATGCAATATTTGCATTATCTGCAATA
TTTGCATGTATATTATATAAATCAAAATTCATGTGTCATTAGATGATGGC
AAAGTACTCTCATACTGAGCATTTTGACTATTTATGCAGTATAGAAACCT
GGTAAGATTCATCTTCATCCTAGTTGTCAAACTCACGCTGATGACAAACT
CGTAACAATTCTAAACTAGTGATGGCTTCGAGGCGAGCATGGCGTCGTCG
ATATCCCCAATACCAAGTCCTCAAGATACCAGTATTATGCACTGTTATTA
CGGTGGCGACTTTTTTTTTCTGCAATTTCAGCTTTTCAATATCATTTCAA
AATAGGATCGGTAGTGAGCTATCTCCATTGTCCAAATTGCGTTTAGATTT
CACGTACACAGATCAGGTCTTGAATGCATGCAAAGATATTGACCCGTGTA
TTACTATTCATGTATTTGGATATTGTCGACTTGATGCGACACGAAATTTG
CTCAAAATGCTTTCCGAAGCCAATTATTCAACTTATTTCCATGCAATCCC
CTTGATAATTCATTTGGACCGTCCTATCGAGGAAGGAATCACTGAAAAAG
TGTTACAAGATACTGAGACCATAGTTGATCACGTAAAAGACATGTCGTGG
CCACACGGGCCAAAAATCCTTGACTTGAAACGCCATCACCACGGTCTTAA
GCGCTCTTGGTTATCTGCCTGGCCCTATCCTCGATCTAACGATATTATGA
TTGCTTTTGAGGACGATATGGTGTTGTCGCCAGAATACTTTGTCTGGCTC
ATGAAGGTCTTCGAAGAGTACAAGTTGTGGAAAGCTCCGACTCGGGATCC
TCTCTTGCTTGGTATATCTCTAGCTCCAGTGCTTATAGATGAGGTTGGGG
ATCCGCCTCATAAATGGGAACCATATGAGGAAATGCCACCTGAAAGGTAC
CCACTATATCTTCATGGGTTGCCTTCTTCTTGGGGCGCTGTTTATTTTGG
AAACCAATGGAAAGAATTCCTACGATTTGTAGATGTACGTGGTCGGTCAC
CATTTTTTTCCAATGTCGATGACAGCAACAGAAAAAAAGGGGAAAGTGAC
GACCGGCAGGATGACCCAAATCTATGGCTTCCTCAGAGTAAGACAAACTT
GTGGCGCAATTCCTGGAAACGCTTCATGATTGATTTTGCATACGGGCGCG
GATGCTACATGCTGCACCCAAATATGGGGCCATCTCTAGGGCTTGCTACT
TCAACATTCCTCGCGGGCGAGCATTTCGGTGACGGGTCATCAAAAAACCC
GCGGCAAGGGACGTTGGTCAATAGGACCCAACTTCGCCTAGAGCTGCCCT
TTCCTCCCTATATGGATTTACCACTAGTAGACATATACAGTAGAGCCATT
GACAGCATTATCATGGCCCAGAAAGGTGATAGATTCGTCAGACGCATATC
GGCCTTGAGTCCTTCCCACAGTGTGCTAGCTTCGCTGTGGAGTCGTCCCT
GTGTACTGGATCAAAAACATGCACCTACACAAAAATTCCCCCTGGGCGGC
CAGTCTAAGATGCTTCTGGTCATTCCTGAGGGCAATATTCATCAACAAAT
GCTGACTCTTACTTGTGGATCAATAATAGCAACAACACTGGAACGTTCAC
TGGTAATGCCGCCCGTACAAGTGCATGGGTTGAATCATAGCGACCCGAAA
GGCGGCCGTTGGACGCCTTTGGCATCCTTAATTGATCCAGTACAGCTTCA
AGCAATATTTACCACACTTGATATTGTGTACCTAAGTATGAATGACTTGT
TTCAGTGGGATCCAGCTCGCATTTCAGTCTTCGATTCAAGAATCGAAAAT
GAGAATGTATTTATTTCTTCCGCTGGTTGGGGAGACGTCCCCCGATTTCT
CTGGAACTCCACAAGTCGACATATGCCCCCTCTTTGGAACGAAAGGCATG
TATATGCGGCATTTGGAACATGTTCAGATGATATGCTGGTGCTTTCTAAA
CTGCCTGTATCTTTGATCACAGAGTTGAAGAAATCAGAGACCTTCGATCG
CATCAATCGAGCGCTGATGACTTTAACAGATCAGTTGCCTTGAGCACTTG
AGATCCGGAAAATATGTATGTCTTTGACAAGAACCGCCGACTGACTTGAC
TGAACCATGCTTCTACCAATGTGTGATGAAACATTTTATAAACAACTTCA
TGAATTTCAATGATACCTTACCTCCGTCGGATGATAGACACAATTGTGCA
GCACTCAAGGCGCTATACAACCTTAAAGCCCATGAGTTTCTGGGATGACG
ATCTAAAGATTTCATAGTGAAACCACGTACCGCTTGTAGCACGGATGGAA
GTATAAATATACTCAGTGCGCCGTACAATGGCCTCCCCCGAAAAAATGCC
CTTCATCCATCTGCATATTATGTAAGGCTTCCTCCCATTATTTTTGCCTT
GCTTTATCCTTCTGCATCCAAAATATGGCCTTCAAGCGGCGTGTGAGCTT
CGTTCTCGATATATGTCCATATATCGAGAACGAAATTACCTCATCGTGCT
CCGCACTTTTGTGTACGAAGTCACCGGAAACATTCACCGCCTTAATAAAT
TATATCTATAGCAACCGTTTACCTGTCAGGTTTGCTGGCAAATGTTGTTA
TACAATACAAATTGACAAATAAACTCGTGCTTAGAAGGATCTAAACGCTC
AAGATCAGCGCTCATACGAATGAGGGGGGGGGACGCTCAGGAGACGTTCC
TGTCTCACGGGCCTTTTCTCGACCTCACGCA

Coding sequence (CDS) from alignment at scaffold_31:158797..161827+

>mRNA_9639 ID=mRNA_9639|Name=jgi.p|Nanoce1779_2|253436|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_31:158797..161827+ (Nannochloropsis oceanica)
ATGGCTTCGAGGCGAGCATGGCGTCGTCGATATCCCCAATACCAAGTCCT
CAAGATACCAGTATTATGCACTGTTATTACGGTGGCGACTTTTTTTTTCT
GCAATTTCAGCTTTTCAATATCATTTCAAAATAGGATCGGTAGTGAGCTA
TCTCCATTGTCCAAATTGCGTTTAGATTTCACGTACACAGATCAGGTCTT
GAATGCATGCAAAGATATTGACCCGTGTATTACTATTCATGTATTTGGAT
ATTGTCGACTTGATGCGACACGAAATTTGCTCAAAATGCTTTCCGAAGCC
AATTATTCAACTTATTTCCATGCAATCCCCTTGATAATTCATTTGGACCG
TCCTATCGAGGAAGGAATCACTGAAAAAGTGTTACAAGATACTGAGACCA
TAGTTGATCACGTAAAAGACATGTCGTGGCCACACGGGCCAAAAATCCTT
GACTTGAAACGCCATCACCACGGTCTTAAGCGCTCTTGGTTATCTGCCTG
GCCCTATCCTCGATCTAACGATATTATGATTGCTTTTGAGGACGATATGG
TGTTGTCGCCAGAATACTTTGTCTGGCTCATGAAGGTCTTCGAAGAGTAC
AAGTTGTGGAAAGCTCCGACTCGGGATCCTCTCTTGCTTGGTATATCTCT
AGCTCCAGTGCTTATAGATGAGGTTGGGGATCCGCCTCATAAATGGGAAC
CATATGAGGAAATGCCACCTGAAAGGTACCCACTATATCTTCATGGGTTG
CCTTCTTCTTGGGGCGCTGTTTATTTTGGAAACCAATGGAAAGAATTCCT
ACGATTTGTAGATGTACGTGGTCGGTCACCATTTTTTTCCAATGTCGATG
ACAGCAACAGAAAAAAAGGGGAAAGTGACGACCGGCAGGATGACCCAAAT
CTATGGCTTCCTCAGAGTAAGACAAACTTGTGGCGCAATTCCTGGAAACG
CTTCATGATTGATTTTGCATACGGGCGCGGATGCTACATGCTGCACCCAA
ATATGGGGCCATCTCTAGGGCTTGCTACTTCAACATTCCTCGCGGGCGAG
CATTTCGGTGACGGGTCATCAAAAAACCCGCGGCAAGGGACGTTGGTCAA
TAGGACCCAACTTCGCCTAGAGCTGCCCTTTCCTCCCTATATGGATTTAC
CACTAGTAGACATATACAGTAGAGCCATTGACAGCATTATCATGGCCCAG
AAAGGTGATAGATTCGTCAGACGCATATCGGCCTTGAGTCCTTCCCACAG
TGTGCTAGCTTCGCTGTGGAGTCGTCCCTGTGTACTGGATCAAAAACATG
CACCTACACAAAAATTCCCCCTGGGCGGCCAGTCTAAGATGCTTCTGGTC
ATTCCTGAGGGCAATATTCATCAACAAATGCTGACTCTTACTTGTGGATC
AATAATAGCAACAACACTGGAACGTTCACTGGTAATGCCGCCCGTACAAG
TGCATGGGTTGAATCATAGCGACCCGAAAGGCGGCCGTTGGACGCCTTTG
GCATCCTTAATTGATCCAGTACAGCTTCAAGCAATATTTACCACACTTGA
TATTGTGTACCTAAGTATGAATGACTTGTTTCAGTGGGATCCAGCTCGCA
TTTCAGTCTTCGATTCAAGAATCGAAAATGAGAATGTATTTATTTCTTCC
GCTGGTTGGGGAGACGTCCCCCGATTTCTCTGGAACTCCACAAGTCGACA
TATGCCCCCTCTTTGGAACGAAAGGCATGTATATGCGGCATTTGGAACAT
GTTCAGATGATATGCTGGTGCTTTCTAAACTGCCTGTATCTTTGATCACA
GAGTTGAAGAAATCAGAGACCTTCGATCGCATCAATCGAGCGCTGATGAC
TTTAACAGATCAGTTGCCTTGA

Synonyms

Publications