jgi.p|Nanoce1779_2|605291, mRNA_9637 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605291
Unique Name	mRNA_9637
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2310
Alignment location	scaffold_31:154691..157333 +

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Properties


Property Name	Value
TranscriptId	605377
Track	FilteredModels2
ProteinId	605291

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:154691..157333 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605291	gene_9637	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605291	mRNA_9637-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9637	CDS_9637	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:154691..157333+
coding sequence from alignment at scaffold_31:154691..157333+

mRNA sequence

>mRNA_9637 ID=mRNA_9637|Name=jgi.p|Nanoce1779_2|605291|organism=Nannochloropsis oceanica|type=mRNA|length=2310bp
AGAAACACATTTAAGGTATGCGCCGACATAGGAAACACCATTTCCTCTTT
TTGGTGCTGTTAATTGGAGCCTGTGGCCTTCATTGCATTCTGGTATTTGA
GCGACAGATACGCGACGATTGGAGCTACAAAGCTCCCCCAGCACACAAGG
AAAGACATTCCTTGTACTTCGCTTCATCAGACATGCATATAGATGAGACT
TTGCAGGCATGTTCAGAATATGAGCCGCAATCCACACAAAATTTAATTGC
GTGGACAGATAAGTCATGGAAAGAACTCGTTTGCCCCGGCCCTGATGTTA
TACCATCGCGACTTCTATGTAGCACTTATCAATGAGTATCGACTCGAGGA
GTGTCTTGGACCTCTCCTACGGAGCTCGCACCATTTCGGGACTGTGGAAT
GCGGATTTCGCTACGAGGTGATCCTGGGTTACGATAGCGGTGATGAATTT
TACGACACTCCATTAGGCCAGGAGGTGACTTTCAGATGGTTCCAGACACA
TGTGCAAAACATCCTAGCAAATGCGAACATCAATATTATGCTTGTTTTGA
AGAAAGTAGAAAACAAAATCCAGAAGCCAGGTCCGGTATTCAACGATATA
GCTCGCATGGCCTACAGCCGGGGCGCTGACTACCTTTATCGCGTAAATGA
CGACTCGGAATTCCTCAGCCCTTGGGCTTACAAGTTCGTAAGAACTCTTC
AAGGGATGGGCAGCCCATATGGTGTCGTTGGACCATGGTGTAACCAGAGT
AATACAAAGATATTGAACCATGACTTTACACATCGTACCCATATGGACAT
TTTTGAAGATTATTACCCCCCTCTCCTTACAGACTGGTATCTGGACGATT
GGATATCTATGGTATACGGCAGCACCAGGACGAGACAATTTGAGAATATT
GAGATACTTCATCACACTGGAAACCAAAATGTACGGTATACGGTTGACTA
CTATCGACGGAAGTATTTGGAAGATCTTGTTGTAAAAGGAAAGGGCAAGA
TACTAGAGTATATGGTGATGCATAATGTACCAAATGATGAAATCGAGGCG
TTCGATGCATCTCGCTTCAAAAACTTCACCATTAAACTGGTCAAGTGAGT
GGGATGTAGTAAGAACAAAATAGCCTTGTTAAATTGCCTTGATAAGCCAT
GGATGACATAGAGTATGCGAACTTTCCTTCATTGGTTTTGAGGATTTTAG
AAGAAAAGGGTAGTGGGTCTGTGGAAATCGAGTAACTCTTGATGGCCTTG
TCAGGAGGGTTCATGTGGACTCAATTTCCCATCACGCTCTTGGGTCCCAG
CCATGCACTTTTTCTTTATCATGCATGTTTCGATCCATTACATGCTTTCT
GCTCTCTCTGGCGCAATAGAACACCTTAGAGAATGCTCATTTTTGATCAA
CGATTTGCTTAGAATTCCGGAGGGGTGCCTGATAATTGCCGATGGTTATG
ATATTCGAAGCTTTTATTTCATTTCTTCTCACTCTGTGATGATGGTATGC
ATGTAAAACTTGAAACATTTGGAGCGCTGAGGAACTTTCTGTCTCAAGAG
CCCTCTCTCGAGGTTTCCCGCAGGAAATGCGCCTGAAAAATGAGCTGATG
GAGAAATTCGCGAAAACCTACTTTCAATGTTTGTTGACATTTTCCGTCTT
TCTTGCCTCACAAATAAAGCGGGAGTATAGGAATGCTCAGAAGGCGTTTC
TGTCACACGGGCCTTCTCTGGAGGCTTCGCGCCACACGTTGGATGACTAC
CAATATTCCATAGTCAGTCGCTAAACCTCCTGTCTTGCGATTGTGCATGA
CTATTTGTCGTTACAATCGTCCACTCCAACGATTATGCACGACTATGGCG
ATTTAAACGACTCTCACGACAATGACGACTCCCACTGACTACACAGAAAC
TATACAGAGAGTTATGTAAGGTTTTTGCTCTTTTCACTTTTTTGGGGTTT
CAATCACCATTACGAGCCTTGCTACCGGCATAGTGACATCACCTTCTATC
ATATTTTGAGCACCAAAATAACCCCGCCCCGCATGACGGGGTAGATGCCA
GCATCAGGCCAGTGGTGTTTTCGCGGGACAAAATGTCTCTGATCATATCT
GTGGGACTATCTGATCGTATCTGTGGGATATTCAGACTTACTTGAGGTGA
AAGGGAAAAAAAGAAATTTTGTGTTGCTTTGCGACTGACCTTCGGTCTGC
ATGAGAGCAAAGTCAAACTCACAAAGGAAAGAAGGAAAGAACTAAAGTTT
CATTACACACAATGGTTCACGTACGGTAAACCAGCGAAAATCAATTTACG
TAGTATTTCT

protein sequence of jgi.p|Nanoce1779_2|605291

>mRNA_9637-protein ID=mRNA_9637-protein|Name=jgi.p|Nanoce1779_2|605291|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MLYHRDFYVALINEYRLEECLGPLLRSSHHFGTVECGFRYEVILGYDSGD
EFYDTPLGQEVTFRWFQTHVQNILANANINIMLVLKKVENKIQKPGPVFN
DIARMAYSRGADYLYRVNDDSEFLSPWAYKFVRTLQGMGSPYGVVGPWCN
QSNTKILNHDFTHRTHMDIFEDYYPPLLTDWYLDDWISMVYGSTRTRQFE
NIEILHHTGNQNVRYTVDYYRRKYLEDLVVKGKGKILEYMVMHNVPNDEI
EAFDASRFKNFTIKLVK*

mRNA from alignment at scaffold_31:154691..157333+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9637 ID=mRNA_9637|Name=jgi.p|Nanoce1779_2|605291|organism=Nannochloropsis oceanica|type=mRNA|length=2643bp|location=Sequence derived from alignment at scaffold_31:154691..157333+ (Nannochloropsis oceanica)
AGAAACACATTTAAGGTATGCGCCGACATAGGAAACACCATTTCCTCTTT
TTGGTGCTGTTAATTGGAGCCTGTGGCCTTCATTGCATTCTGGTATTTGA
GCGACAGATACGCGACGATTGGAGCTACAAAGCTCCCCCAGCACACAAGG
AAAGACATTCCTTGTACTTCGCTTCATCAGACATGTACGTGCATTTGATC
TTAAGAGACAATTTCGATGAGGAATGTTATATTACCCGTGATTGTCTCTT
CGAACAGGCATATAGATGAGACTTTGCAGGCATGTTCAGAATATGAGCCG
CAATCCACACAAAATTTAATTGCGTGGACAGATAAGTCATGGAAAGAACT
CGTTTGCCCCGGCCCTGATGTTATACCATCGCGACTTCTATGTAGCACTT
ATCAATGTAAGTAAGGCACATCACAGGTTAACTTGATCCATGTCGTTCAG
GAACCCCATACAATAAAGACAGCGACCCAGTAGAGACTTTGATCACTATT
TTGGCAGGAGTATCGACTCGAGGAGTGTCTTGGACCTCTCCTACGGAGCT
CGCACCATTTCGGGTAAGTTCTTTGTCCTATATTTTGAACTAGACGTGAT
CCTTGATTCTCATTGCTGATTATCGAAGCATTTGCTTCCATCGATTGTAA
GGACTGTGGAATGCGGATTTCGCTACGAGGTGATCCTGGGTTACGATAGC
GGTGATGAATTTTACGACACTCCATTAGGCCAGGAGGTGACTTTCAGATG
GTTCCAGGTATTTATAAATATGCATTTTCCCTTGGTCCCTTCAATCTGTT
TTTTCTCACATTGTCTTAACCCTAACAGACACATGTGCAAAACATCCTAG
CAAATGCGAACATCAATATTATGCTTGTTTTGAAGAAAGTAGAAAACAAA
ATCCAGAAGCCAGGTCCGGTATTCAACGATATAGCTCGCATGGCCTACAG
CCGGGGCGCTGACTACCTTTATCGCGTAAATGACGACTCGGAATTCCTCA
GCCCTTGGGCTTACAAGTTCGTAAGAACTCTTCAAGGGATGGGCAGCCCA
TATGGTGTCGTTGGACCATGGTGTAACCAGAGTAATACAAAGATATTGAA
CCATGACTTTACACATCGTACCCATATGGACATTTTTGAAGATTATTACC
CCCCTCTCCTTACAGACTGGTATCTGGACGATTGGATATCTATGGTATAC
GGCAGCACCAGGACGAGACAATTTGAGAATATTGAGATACTTCATCACAC
TGGAAACCAAAATGTACGGTATACGGTTGACTACTATCGACGGAAGTATT
TGGAAGATCTTGTTGTAAAAGGAAAGGGCAAGATACTAGAGTATATGGTG
ATGCATAATGTACCAAATGATGAAATCGAGGCGTTCGATGCATCTCGCTT
CAAAAACTTCACCATTAAACTGGTCAAGTGAGTGGGATGTAGTAAGAACA
AAATAGCCTTGTTAAATTGCCTTGATAAGCCATGGATGACATAGAGTATG
CGAACTTTCCTTCATTGGTTTTGAGGATTTTAGAAGAAAAGGGTAGTGGG
TCTGTGGAAATCGAGTAACTCTTGATGGCCTTGTCAGGAGGGTTCATGTG
GACTCAATTTCCCATCACGCTCTTGGGTCCCAGCCATGCACTTTTTCTTT
ATCATGCATGTTTCGATCCATTACATGCTTTCTGCTCTCTCTGGCGCAAT
AGAACACCTTAGAGAATGCTCATTTTTGATCAACGATTTGCTTAGAATTC
CGGAGGGGTGCCTGATAATTGCCGATGGTTATGATATTCGAAGCTTTTAT
TTCATTTCTTCTCACTCTGTGATGATGGTATGCATGTAAAACTTGAAACA
TTTGGAGCGCTGAGGAACTTTCTGTCTCAAGAGCCCTCTCTCGAGGTTTC
CCGCAGGAAATGCGCCTGAAAAATGAGCTGATGGAGAAATTCGCGAAAAC
CTACTTTCAATGTTTGTTGACATTTTCCGTCTTTCTTGCCTCACAAATAA
AGCGGGAGTATAGGAATGCTCAGAAGGCGTTTCTGTCACACGGGCCTTCT
CTGGAGGCTTCGCGCCACACGTTGGATGACTACCAATATTCCATAGTCAG
TCGCTAAACCTCCTGTCTTGCGATTGTGCATGACTATTTGTCGTTACAAT
CGTCCACTCCAACGATTATGCACGACTATGGCGATTTAAACGACTCTCAC
GACAATGACGACTCCCACTGACTACACAGAAACTATACAGAGAGTTATGT
AAGGTTTTTGCTCTTTTCACTTTTTTGGGGTTTCAATCACCATTACGAGC
CTTGCTACCGGCATAGTGACATCACCTTCTATCATATTTTGAGCACCAAA
ATAACCCCGCCCCGCATGACGGGGTAGATGCCAGCATCAGGCCAGTGGTG
TTTTCGCGGGACAAAATGTCTCTGATCATATCTGTGGGACTATCTGATCG
TATCTGTGGGATATTCAGACTTACTTGAGGTGAAAGGGAAAAAAAGAAAT
TTTGTGTTGCTTTGCGACTGACCTTCGGTCTGCATGAGAGCAAAGTCAAA
CTCACAAAGGAAAGAAGGAAAGAACTAAAGTTTCATTACACACAATGGTT
CACGTACGGTAAACCAGCGAAAATCAATTTACGTAGTATTTCT

Coding sequence (CDS) from alignment at scaffold_31:154691..157333+

>mRNA_9637 ID=mRNA_9637|Name=jgi.p|Nanoce1779_2|605291|organism=Nannochloropsis oceanica|type=CDS|length=3216bp|location=Sequence derived from alignment at scaffold_31:154691..157333+ (Nannochloropsis oceanica)
ATGTTATACCATCGCGACTTCTATGTAGCACTTATCAATGAGTATCGACT
CGAGGAGTGTCTTGGACCTCTCCTACGGAGCTCGCACCATTTCGGGACTG
TGGAATGCGGATTTCGCTACGAGGTGATCCTGGGTTACGATAGCGGTGAT
GAATTTTACGACACTCCATTAGGCCAGGAGGTGACTTTCAGATGGTTCCA
GACACATGTGCAAAACATCCTAGCAAATGCGAACATCAATATTATGCTTG
TTTTGAAGAAAGTAGAAAACAAAATCCAGAAGCCAGGTCCGGTATTCAAC
GATATAGCTCGCATGGCCTACAGCCGGGGCGCTGACTACCTTTATCGCGT
AAATGACGACTCGGAATTCCTCAGCCCTTGGGCTTACAAGTTCGTAAGAA
CTCTTCAAGGGATGGGCAGCCCATATGGTGTCGTTGGACCATGGTGTAAC
CAGAGTAATACAAAGATATTGAACCATGACTTTACACATCGTACCCATAT
GGACATTTTTGAAGATTATTACCCCCCTCTCCTTACAGACTGGTATCTGG
ACGATTGGATATCTATGGTATACGGCAGCACCAGGACGAGACAATTTGAG
AATATTGAGATACTTCATCACACTGGAAACCAAAATGTACGGTATACGGT
TGACTACTATCGACGGAAGTATTTGGAAGATCTTGTTGTAAAAGGAAAGG
GCAAGATACTAGAGTATATGGTGATGCATAATGTACCAAATGATGAAATC
GAGGCGTTCGATGCATCTCGCTTCAAAAACTTCACCATTAAACTGGTCAA
GTGAATGTTATACCATCGCGACTTCTATGTAGCACTTATCAATGAGTATC
GACTCGAGGAGTGTCTTGGACCTCTCCTACGGAGCTCGCACCATTTCGGG
ACTGTGGAATGCGGATTTCGCTACGAGGTGATCCTGGGTTACGATAGCGG
TGATGAATTTTACGACACTCCATTAGGCCAGGAGGTGACTTTCAGATGGT
TCCAGACACATGTGCAAAACATCCTAGCAAATGCGAACATCAATATTATG
CTTGTTTTGAAGAAAGTAGAAAACAAAATCCAGAAGCCAGGTCCGGTATT
CAACGATATAGCTCGCATGGCCTACAGCCGGGGCGCTGACTACCTTTATC
GCGTAAATGACGACTCGGAATTCCTCAGCCCTTGGGCTTACAAGTTCGTA
AGAACTCTTCAAGGGATGGGCAGCCCATATGGTGTCGTTGGACCATGGTG
TAACCAGAGTAATACAAAGATATTGAACCATGACTTTACACATCGTACCC
ATATGGACATTTTTGAAGATTATTACCCCCCTCTCCTTACAGACTGGTAT
CTGGACGATTGGATATCTATGGTATACGGCAGCACCAGGACGAGACAATT
TGAGAATATTGAGATACTTCATCACACTGGAAACCAAAATGTACGGTATA
CGGTTGACTACTATCGACGGAAGTATTTGGAAGATCTTGTTGTAAAAGGA
AAGGGCAAGATACTAGAGTATATGGTGATGCATAATGTACCAAATGATGA
AATCGAGGCGTTCGATGCATCTCGCTTCAAAAACTTCACCATTAAACTGG
TCAAGTGAATGTTATACCATCGCGACTTCTATGTAGCACTTATCAATGAG
TATCGACTCGAGGAGTGTCTTGGACCTCTCCTACGGAGCTCGCACCATTT
CGGGACTGTGGAATGCGGATTTCGCTACGAGGTGATCCTGGGTTACGATA
GCGGTGATGAATTTTACGACACTCCATTAGGCCAGGAGGTGACTTTCAGA
TGGTTCCAGACACATGTGCAAAACATCCTAGCAAATGCGAACATCAATAT
TATGCTTGTTTTGAAGAAAGTAGAAAACAAAATCCAGAAGCCAGGTCCGG
TATTCAACGATATAGCTCGCATGGCCTACAGCCGGGGCGCTGACTACCTT
TATCGCGTAAATGACGACTCGGAATTCCTCAGCCCTTGGGCTTACAAGTT
CGTAAGAACTCTTCAAGGGATGGGCAGCCCATATGGTGTCGTTGGACCAT
GGTGTAACCAGAGTAATACAAAGATATTGAACCATGACTTTACACATCGT
ACCCATATGGACATTTTTGAAGATTATTACCCCCCTCTCCTTACAGACTG
GTATCTGGACGATTGGATATCTATGGTATACGGCAGCACCAGGACGAGAC
AATTTGAGAATATTGAGATACTTCATCACACTGGAAACCAAAATGTACGG
TATACGGTTGACTACTATCGACGGAAGTATTTGGAAGATCTTGTTGTAAA
AGGAAAGGGCAAGATACTAGAGTATATGGTGATGCATAATGTACCAAATG
ATGAAATCGAGGCGTTCGATGCATCTCGCTTCAAAAACTTCACCATTAAA
CTGGTCAAGTGAATGTTATACCATCGCGACTTCTATGTAGCACTTATCAA
TGAGTATCGACTCGAGGAGTGTCTTGGACCTCTCCTACGGAGCTCGCACC
ATTTCGGGACTGTGGAATGCGGATTTCGCTACGAGGTGATCCTGGGTTAC
GATAGCGGTGATGAATTTTACGACACTCCATTAGGCCAGGAGGTGACTTT
CAGATGGTTCCAGACACATGTGCAAAACATCCTAGCAAATGCGAACATCA
ATATTATGCTTGTTTTGAAGAAAGTAGAAAACAAAATCCAGAAGCCAGGT
CCGGTATTCAACGATATAGCTCGCATGGCCTACAGCCGGGGCGCTGACTA
CCTTTATCGCGTAAATGACGACTCGGAATTCCTCAGCCCTTGGGCTTACA
AGTTCGTAAGAACTCTTCAAGGGATGGGCAGCCCATATGGTGTCGTTGGA
CCATGGTGTAACCAGAGTAATACAAAGATATTGAACCATGACTTTACACA
TCGTACCCATATGGACATTTTTGAAGATTATTACCCCCCTCTCCTTACAG
ACTGGTATCTGGACGATTGGATATCTATGGTATACGGCAGCACCAGGACG
AGACAATTTGAGAATATTGAGATACTTCATCACACTGGAAACCAAAATGT
ACGGTATACGGTTGACTACTATCGACGGAAGTATTTGGAAGATCTTGTTG
TAAAAGGAAAGGGCAAGATACTAGAGTATATGGTGATGCATAATGTACCA
AATGATGAAATCGAGGCGTTCGATGCATCTCGCTTCAAAAACTTCACCAT
TAAACTGGTCAAGTGA

Synonyms

Publications