jgi.p|Nanoce1779_2|605288, mRNA_9636 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605288
Unique NamemRNA_9636
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length692
Alignment locationscaffold_31:154691..155447 +

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Properties
Property NameValue
TranscriptId605374
TrackFilteredModels2
ProteinId605288
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:154691..155447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605288gene_9636Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605288mRNA_9636-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9636CDS_9636Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9636 ID=mRNA_9636|Name=jgi.p|Nanoce1779_2|605288|organism=Nannochloropsis oceanica|type=mRNA|length=692bp
AGAAACACATTTAAGGTATGCGCCGACATAGGAAACACCATTTCCTCTTT
TTGGTGCTGTTAATTGGAGCCTGTGGCCTTCATTGCATTCTGGTATTTGA
GCGACAGATACGCGACGATTGGAGCTACAAAGCTCCCCCAGCACACAAGG
AAAGACATTCCTTGTACTTCGCTTCATCAGACATGTACGTGCATTTGATC
TTAAGAGACAATTTCGATGAGGAATGTTATATTACCCGTGATTGTCTCTT
CGAACAGGCATATAGATGAGACTTTGCAGGCATGTTCAGAATATGAGCCG
CAATCCACACAAAATTTAATTGCGTGGACAGATAAGTCATGGAAAGAACT
CGTTTGCCCCGGCCCTGATGTTATACCATCGCGACTTCTATGTAGCACTT
ATCAATGTAAGTAAGGCACATCACAGGTTAACTTGATCCATGTCGTTCAG
GAACCCCATACAATAAAGACAGCGACCCAGTAGAGACTTTGATCACTATT
TTGGCAGGAGTATCGACTCGAGGAGTGTCTTGGACCTCTCCTACGGAGCT
CGCACCATTTCGGCATTTGCTTCCATCGATTGTAAGGACTGTGGAATGCG
GATTTCGCTACGAGGTGATCCTGGGTTACGATAGCGGTGATGAATTTTAC
GACACTCCATTAGGCCAGGAGGTGACTTTCAGATGGTTCCAG
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protein sequence of jgi.p|Nanoce1779_2|605288

>mRNA_9636-protein ID=mRNA_9636-protein|Name=jgi.p|Nanoce1779_2|605288|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MRRHRKHHFLFLVLLIGACGLHCILVFERQIRDDWSYKAPPAHKERHSLY
FASSDMYVHLILRDNFDEECYITRDCLFEQAYR*
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mRNA from alignment at scaffold_31:154691..155447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9636 ID=mRNA_9636|Name=jgi.p|Nanoce1779_2|605288|organism=Nannochloropsis oceanica|type=mRNA|length=757bp|location=Sequence derived from alignment at scaffold_31:154691..155447+ (Nannochloropsis oceanica)
AGAAACACATTTAAGGTATGCGCCGACATAGGAAACACCATTTCCTCTTT
TTGGTGCTGTTAATTGGAGCCTGTGGCCTTCATTGCATTCTGGTATTTGA
GCGACAGATACGCGACGATTGGAGCTACAAAGCTCCCCCAGCACACAAGG
AAAGACATTCCTTGTACTTCGCTTCATCAGACATGTACGTGCATTTGATC
TTAAGAGACAATTTCGATGAGGAATGTTATATTACCCGTGATTGTCTCTT
CGAACAGGCATATAGATGAGACTTTGCAGGCATGTTCAGAATATGAGCCG
CAATCCACACAAAATTTAATTGCGTGGACAGATAAGTCATGGAAAGAACT
CGTTTGCCCCGGCCCTGATGTTATACCATCGCGACTTCTATGTAGCACTT
ATCAATGTAAGTAAGGCACATCACAGGTTAACTTGATCCATGTCGTTCAG
GAACCCCATACAATAAAGACAGCGACCCAGTAGAGACTTTGATCACTATT
TTGGCAGGAGTATCGACTCGAGGAGTGTCTTGGACCTCTCCTACGGAGCT
CGCACCATTTCGGGTAAGTTCTTTGTCCTATATTTTGAACTAGACGTGAT
CCTTGATTCTCATTGCTGATTATCGAAGCATTTGCTTCCATCGATTGTAA
GGACTGTGGAATGCGGATTTCGCTACGAGGTGATCCTGGGTTACGATAGC
GGTGATGAATTTTACGACACTCCATTAGGCCAGGAGGTGACTTTCAGATG
GTTCCAG
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Coding sequence (CDS) from alignment at scaffold_31:154691..155447+

>mRNA_9636 ID=mRNA_9636|Name=jgi.p|Nanoce1779_2|605288|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_31:154691..155447+ (Nannochloropsis oceanica)
ATGCGCCGACATAGGAAACACCATTTCCTCTTTTTGGTGCTGTTAATTGG
AGCCTGTGGCCTTCATTGCATTCTGGTATTTGAGCGACAGATACGCGACG
ATTGGAGCTACAAAGCTCCCCCAGCACACAAGGAAAGACATTCCTTGTAC
TTCGCTTCATCAGACATGTACGTGCATTTGATCTTAAGAGACAATTTCGA
TGAGGAATGTTATATTACCCGTGATTGTCTCTTCGAACAGGCATATAGAT
GA
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Synonyms
Publications