jgi.p|Nanoce1779_2|605283, mRNA_9635 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605283
Unique Name	mRNA_9635
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2478
Alignment location	scaffold_31:152306..154783 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605369
Track	FilteredModels2
ProteinId	605283

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:152306..154783 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605283	gene_9635	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605283	mRNA_9635-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9635	CDS_9635	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:152306..154783-
coding sequence from alignment at scaffold_31:152306..154783-

mRNA sequence

>mRNA_9635 ID=mRNA_9635|Name=jgi.p|Nanoce1779_2|605283|organism=Nannochloropsis oceanica|type=mRNA|length=2478bp
CCAGAATGCAATGAAGGCCACAGGCTCCAATTAACAGCACCAAAAAGAGG
AAATGGTGTTTCCTATGTCGGCGCATACCTTAAATGTGTTTCTTAAGTGA
TATGCCGTGCAAGAAATGCATGAGTCATATTTCAGGTAATTTTTTACATT
CTAGGGAATTCGAAGGGCATTATCGTGACAATCGTGGGGAAGGCTTGGGG
AAACATTGTGCAAAGCCCTTCGGTACAAGCAAGGATTAGCGCTGGCTAGT
TTTCTCTTGCCGGATAGATCGGATAGTCCGTACTTCTAGCCGGGTTAAGC
CGGTGGAGAGTGTTTGGGGAGAATAGGTCGGGTGGAGGGGATATTCCTAG
GGACTGATATTAGGGACCCCTAAATGGAAGATGCGACTTAATTACTCACT
CTCTGCGCAGAAAAATTTGAAAACAGGAAAATCAAGAGCTTTATGTTTTT
TGTTTTTTTCCCGATCCTCTCACTAAGAGGTTCGAGCTGACCGCCTTCTC
TTTGGCTTCCAGGAAATGGTCGAACTAGTTCAAAAATGTATGACCCGAGC
CCGGTATATCGATAACTATATCGGGGATCGAGAATTCGGGGTTCGAGCAT
GTTTTTTAATATTGGAGCGGACAATATGGAGGAAAAGATTTCAACCTATT
ATAAGGTTTTACAATTTACTTTTTTTACTTTTTCAGAAAAATCTACGTAT
GACATAGAACATACAACATTAAAATCAAGAGATACCAAATACGCATATGC
TTACGAACACATTTGAACGTGCTACGGGATTTTCGTGCTAGGACTCTTTT
TTTGTCACAAAACGAGCAAAATTCACCATAGAGCATCAAAATCATGGCGT
CGCGACCCGCTTACTATGTTCCATGGCTAGAAGGAGCTATTTGACTCATT
TCAAGACAGAACATCGAAAATGTAACATAGAACATCCAAAGAACGGCAAC
ATACCAGGACTTCTACTCACGCGCTTCTGGTCTTGATCGGATCATTTAAC
ACATGACCGGCAGCCAAAGAAGTGGCTTGTTCAAAGCCGGATGGCGTCAC
CATTCCGCGAAAGCGCCAGTAGCCTGATGCCGGCAGCTACCCCGTCATGC
GGGACTAGCTTGTTGTGGTGCTAACGTCAAGAGAGAAAGAGATGCCATCA
TGTCGGTGGCAAAGCACGTGAAGGTGATTAAACCCCCCAAATAATAAAAA
GGGCACATTAACGTACACAACTTTCTGTATATTCCGTAGACGGTTTCGCG
GTTTCCAATTGCAATGCAATGTGATTTTTCGAAGCTTTACTTCTGTAATC
GAGGACAAAAATAAACCAGTAAATCACATTAGCATATGAGTAGGTTCTTT
GCATAGGGAAGATACAAAACACTGTGTAATATTCTCAAGCATATAATGGG
GAAAGATCCCCGCTTTCACCGTCTGAATGGCTTGACCACACTTGTCATCA
TTTTATCATGCGGTACTTTGATATCTCTTCCCTGGTACTCATTTCCTAGC
AGCGAACGTATGGTCAGAACATCTGAGAAGCTATACTGCGTAACAGAGCC
CGACAAAGGGGTTTTGTACTTTGCCTACCATAAAGATCATAAGCATGCCA
AGCGTATCTTGATGCGTGCACGCGATAGCATCGATAGTGTTCGACGATAT
AATCCATGCATTAATGTGACTGTCGCAACCAATGTTCCCTTATCTCTAGA
TGACGTCAGAGATACCTGGGGAGTCGACCATGTCATCCCAATCGCAGATG
CTGATATTATTGAGAGCCCACAGGATGCACATGGACGGCAGTGGTGGACA
CGTGCGCTATATTTATCCAAAAGTCCCTATTTTTATACATTGCAGCTGGA
TAGTGACCGGACTGTTTGTGGTAATATATCGCAGGTTTTTCAGCTCCTGC
AGTATTATGACTTTCTGGGCGTATCTGCAGGCATCCTACCCGCTTTCGAT
AACGGCGTGATGGCTTGGGCAAAGCGTCCGATTATTGATGTATTGTGGGA
ACGCTGGAAAGAGGAACTCTTCAAAACCGGTCGTACACTAAATGATCAAC
CACCGCTGGCAAAGGCCTTTGATGACCTACCTGATATACGGGTCGGAGCC
CTAAGCCCTACATTCCAAGGTAAGCTTATACCAGCGCAAGGCGAGCTCTG
GGGACAAGCCAAAGCAAGCCGTACCTTGGTTTTGCACGGTGAAGTCAAGA
TTGTGGCAGGGGGAGCAGATTACTGCCAATCAATAAATGAAGATATCACT
CGACCACGTATTTTCCTGAAAAACTTTCAAGATGAATACAAGGTTGTCTT
CTCCCAGGAAGAATGCAATGAACATTTGAGAAATACCTGTAACTTTCCCG
AAATAGATTGGGATCTAGATTTTCTCGTCATGACACGGACCAAGTATATA
GATTCATATAGAAATTAGGAGTTTCCCAAGTAAAGAAACATAAAAGTCGT
GCGCATGACAAAGTTAGAGCGCGTTCGC

protein sequence of jgi.p|Nanoce1779_2|605283

>mRNA_9635-protein ID=mRNA_9635-protein|Name=jgi.p|Nanoce1779_2|605283|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MGKDPRFHRLNGLTTLVIILSCGTLISLPWYSFPSSERMVRTSEKLYCVT
EPDKGVLYFAYHKDHKHAKRILMRARDSIDSVRRYNPCINVTVATNVPLS
LDDVRDTWGVDHVIPIADADIIESPQDAHGRQWWTRALYLSKSPYFYTLQ
LDSDRTVCGNISQVFQLLQYYDFLGVSAGILPAFDNGVMAWAKRPIIDVL
WERWKEELFKTGRTLNDQPPLAKAFDDLPDIRVGALSPTFQGKLIPAQGE
LWGQAKASRTLVLHGEVKIVAGGADYCQSINEDITRPRIFLKNFQDEYKV
VFSQEECNEHLRNTCNFPEIDWDLDFLVMTRTKYIDSYRN*

mRNA from alignment at scaffold_31:152306..154783-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9635 ID=mRNA_9635|Name=jgi.p|Nanoce1779_2|605283|organism=Nannochloropsis oceanica|type=mRNA|length=2478bp|location=Sequence derived from alignment at scaffold_31:152306..154783- (Nannochloropsis oceanica)
CCAGAATGCAATGAAGGCCACAGGCTCCAATTAACAGCACCAAAAAGAGG
AAATGGTGTTTCCTATGTCGGCGCATACCTTAAATGTGTTTCTTAAGTGA
TATGCCGTGCAAGAAATGCATGAGTCATATTTCAGGTAATTTTTTACATT
CTAGGGAATTCGAAGGGCATTATCGTGACAATCGTGGGGAAGGCTTGGGG
AAACATTGTGCAAAGCCCTTCGGTACAAGCAAGGATTAGCGCTGGCTAGT
TTTCTCTTGCCGGATAGATCGGATAGTCCGTACTTCTAGCCGGGTTAAGC
CGGTGGAGAGTGTTTGGGGAGAATAGGTCGGGTGGAGGGGATATTCCTAG
GGACTGATATTAGGGACCCCTAAATGGAAGATGCGACTTAATTACTCACT
CTCTGCGCAGAAAAATTTGAAAACAGGAAAATCAAGAGCTTTATGTTTTT
TGTTTTTTTCCCGATCCTCTCACTAAGAGGTTCGAGCTGACCGCCTTCTC
TTTGGCTTCCAGGAAATGGTCGAACTAGTTCAAAAATGTATGACCCGAGC
CCGGTATATCGATAACTATATCGGGGATCGAGAATTCGGGGTTCGAGCAT
GTTTTTTAATATTGGAGCGGACAATATGGAGGAAAAGATTTCAACCTATT
ATAAGGTTTTACAATTTACTTTTTTTACTTTTTCAGAAAAATCTACGTAT
GACATAGAACATACAACATTAAAATCAAGAGATACCAAATACGCATATGC
TTACGAACACATTTGAACGTGCTACGGGATTTTCGTGCTAGGACTCTTTT
TTTGTCACAAAACGAGCAAAATTCACCATAGAGCATCAAAATCATGGCGT
CGCGACCCGCTTACTATGTTCCATGGCTAGAAGGAGCTATTTGACTCATT
TCAAGACAGAACATCGAAAATGTAACATAGAACATCCAAAGAACGGCAAC
ATACCAGGACTTCTACTCACGCGCTTCTGGTCTTGATCGGATCATTTAAC
ACATGACCGGCAGCCAAAGAAGTGGCTTGTTCAAAGCCGGATGGCGTCAC
CATTCCGCGAAAGCGCCAGTAGCCTGATGCCGGCAGCTACCCCGTCATGC
GGGACTAGCTTGTTGTGGTGCTAACGTCAAGAGAGAAAGAGATGCCATCA
TGTCGGTGGCAAAGCACGTGAAGGTGATTAAACCCCCCAAATAATAAAAA
GGGCACATTAACGTACACAACTTTCTGTATATTCCGTAGACGGTTTCGCG
GTTTCCAATTGCAATGCAATGTGATTTTTCGAAGCTTTACTTCTGTAATC
GAGGACAAAAATAAACCAGTAAATCACATTAGCATATGAGTAGGTTCTTT
GCATAGGGAAGATACAAAACACTGTGTAATATTCTCAAGCATATAATGGG
GAAAGATCCCCGCTTTCACCGTCTGAATGGCTTGACCACACTTGTCATCA
TTTTATCATGCGGTACTTTGATATCTCTTCCCTGGTACTCATTTCCTAGC
AGCGAACGTATGGTCAGAACATCTGAGAAGCTATACTGCGTAACAGAGCC
CGACAAAGGGGTTTTGTACTTTGCCTACCATAAAGATCATAAGCATGCCA
AGCGTATCTTGATGCGTGCACGCGATAGCATCGATAGTGTTCGACGATAT
AATCCATGCATTAATGTGACTGTCGCAACCAATGTTCCCTTATCTCTAGA
TGACGTCAGAGATACCTGGGGAGTCGACCATGTCATCCCAATCGCAGATG
CTGATATTATTGAGAGCCCACAGGATGCACATGGACGGCAGTGGTGGACA
CGTGCGCTATATTTATCCAAAAGTCCCTATTTTTATACATTGCAGCTGGA
TAGTGACCGGACTGTTTGTGGTAATATATCGCAGGTTTTTCAGCTCCTGC
AGTATTATGACTTTCTGGGCGTATCTGCAGGCATCCTACCCGCTTTCGAT
AACGGCGTGATGGCTTGGGCAAAGCGTCCGATTATTGATGTATTGTGGGA
ACGCTGGAAAGAGGAACTCTTCAAAACCGGTCGTACACTAAATGATCAAC
CACCGCTGGCAAAGGCCTTTGATGACCTACCTGATATACGGGTCGGAGCC
CTAAGCCCTACATTCCAAGGTAAGCTTATACCAGCGCAAGGCGAGCTCTG
GGGACAAGCCAAAGCAAGCCGTACCTTGGTTTTGCACGGTGAAGTCAAGA
TTGTGGCAGGGGGAGCAGATTACTGCCAATCAATAAATGAAGATATCACT
CGACCACGTATTTTCCTGAAAAACTTTCAAGATGAATACAAGGTTGTCTT
CTCCCAGGAAGAATGCAATGAACATTTGAGAAATACCTGTAACTTTCCCG
AAATAGATTGGGATCTAGATTTTCTCGTCATGACACGGACCAAGTATATA
GATTCATATAGAAATTAGGAGTTTCCCAAGTAAAGAAACATAAAAGTCGT
GCGCATGACAAAGTTAGAGCGCGTTCGC

Coding sequence (CDS) from alignment at scaffold_31:152306..154783-

>mRNA_9635 ID=mRNA_9635|Name=jgi.p|Nanoce1779_2|605283|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_31:152306..154783- (Nannochloropsis oceanica)
ATGGGGAAAGATCCCCGCTTTCACCGTCTGAATGGCTTGACCACACTTGT
CATCATTTTATCATGCGGTACTTTGATATCTCTTCCCTGGTACTCATTTC
CTAGCAGCGAACGTATGGTCAGAACATCTGAGAAGCTATACTGCGTAACA
GAGCCCGACAAAGGGGTTTTGTACTTTGCCTACCATAAAGATCATAAGCA
TGCCAAGCGTATCTTGATGCGTGCACGCGATAGCATCGATAGTGTTCGAC
GATATAATCCATGCATTAATGTGACTGTCGCAACCAATGTTCCCTTATCT
CTAGATGACGTCAGAGATACCTGGGGAGTCGACCATGTCATCCCAATCGC
AGATGCTGATATTATTGAGAGCCCACAGGATGCACATGGACGGCAGTGGT
GGACACGTGCGCTATATTTATCCAAAAGTCCCTATTTTTATACATTGCAG
CTGGATAGTGACCGGACTGTTTGTGGTAATATATCGCAGGTTTTTCAGCT
CCTGCAGTATTATGACTTTCTGGGCGTATCTGCAGGCATCCTACCCGCTT
TCGATAACGGCGTGATGGCTTGGGCAAAGCGTCCGATTATTGATGTATTG
TGGGAACGCTGGAAAGAGGAACTCTTCAAAACCGGTCGTACACTAAATGA
TCAACCACCGCTGGCAAAGGCCTTTGATGACCTACCTGATATACGGGTCG
GAGCCCTAAGCCCTACATTCCAAGGTAAGCTTATACCAGCGCAAGGCGAG
CTCTGGGGACAAGCCAAAGCAAGCCGTACCTTGGTTTTGCACGGTGAAGT
CAAGATTGTGGCAGGGGGAGCAGATTACTGCCAATCAATAAATGAAGATA
TCACTCGACCACGTATTTTCCTGAAAAACTTTCAAGATGAATACAAGGTT
GTCTTCTCCCAGGAAGAATGCAATGAACATTTGAGAAATACCTGTAACTT
TCCCGAAATAGATTGGGATCTAGATTTTCTCGTCATGACACGGACCAAGT
ATATAGATTCATATAGAAATTAG

Synonyms

Publications