jgi.p|Nanoce1779_2|256511, mRNA_9633 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|256511
Unique Name	mRNA_9633
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2349
Alignment location	scaffold_31:143430..145883 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	256597
Track	FilteredModels2
ProteinId	256511

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:143430..145883 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|256511	gene_9633	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|256511	mRNA_9633-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9633	CDS_9633	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:143430..145883+
coding sequence from alignment at scaffold_31:143430..145883+

mRNA sequence

>mRNA_9633 ID=mRNA_9633|Name=jgi.p|Nanoce1779_2|256511|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp
ATAGGATGAATCACAGTGCAACGAGCACACACAGGCATCGTCGTCATCCA
TGAGCGGGACATAATGAGGGGTGATCGTCCCTCGTAAACATCAAAAACAG
GTCTGACACCGATAGCAACATCCACCCAGAAGCCAGTTGGGTCGGTCGAG
GAGGCGTGAGGTTGAGGGAGCGCATCGCTTTCGAGATGATTTACTTTGCT
CTTGAAGCCTCGTGGGTCTCGGGCGGGCTTATTTTATTGCTCATAATATG
ATAAAGTAGAGGCCACCATGGCGGTGGCTTTGTCCGTGATGGCGATTAGT
ACCCCAGAAAATAAAAAATAAAATAAAAACTTTGAAGAAACGTGGTTTCC
GCGATGGACGCTGGGTAATTGAGATGGAATGACCATATCCATGATGACTC
GGTGCTCTCTCCGATCATCCCGGCCCCCACCTCTACACCCATTTACACAC
TCTTAATGGCTACTACTTGAACTCAAAAAACAGATGATTAAGATCAATTC
GATGGATAATGAAAGCGAAGGGTTAGGTGTTCATTTATATATTTCGTCAT
CGAAAGCATTTTGTTTACTTTGGTCACTTATTATGGCTATCACTTTGCTC
CTTTTAATCATGCCGTCGGGGCAAGTCTCCCGCGAAGCTTTGTCTGATCA
AAAAGAAATGAACAATACTTGTCAAGACGTAATCGCCAAGCTATACACAA
ACGCCTCGGTGCTGGCGATTCCTCTTTTAAGTCCATCTTGTACGGCCCCG
GAACTCGGCTACTTGCTCTACCAGCGTGAGGACTACGTCCATGCCGCGCG
TCTTTACGAGGAAATGCTGGGCAACGGGATACCAAATACATATGTTGAGA
TTGCTGCTTATCGGTGGCTTTCGGGTTGTTACGAACATCTCGGTCTCTCG
GAGTCCGCAGAATTTTATGCGCGCAGAGCTTTGGAAATCGGAGGTGAGGT
TATGCCCGCACTGAATATAGCAACGCGCTTGGAGGAAAAGGGAGAGATTG
ATGAAGCGGCCGGTCAGTTCAGGCTCGCTTGCACTTTGTATCTGGCATCA
CAACCGCTTCCCAAGGATGGCCGAGAGCAGCTTGAATCCGGTGACCAACG
CGTGCTGTGGCCACATACCTTTTCGACGGGATATCTGAAGAAGCTGCAGA
CACTTGATGCCATCGGGAATGATCACGAAATCACCGATGAAACACGGGCT
CAGGTCCATTGGGAGTTGATTTCTCTAACGCGGCCTCTATTGAATTGTGG
TGAGGAGCTCTTTCGCCGCGGAGGCAATTACGGTAACGGACAGGACTATT
ATTTTGCGACGCCTTCGATCCTGCCGCACCCGACCAACCCGGATGAGGAC
CACCTTATTATCGCGCGACTTATAAATTATCGCATCGACTCCGTAGGACG
TTATTACAAGGATTATCTACCAAAAGATGATAAGAGCGGTATCCTGCGTA
GCGCGTGTGTGCTTTATACCGGTCGTGGTGCAGATCGTGGCGACGTGGTG
CGCATCATGGACGGGCGATTTGAAAGGGTATCATATCGTTTCCTAGGCAC
CGAGGATCCTCGGCTATTTCAATTGGAATCAGGGGAGATTCGCGTTTTTT
GGACTAGCTGGGAATTTTCCAAGTACCTTGGTGAAGGGTCAAGGATAATA
AGCGGAGTCCTACACGTCAATACTTCTACCATTTATGTGGACCACCTCTT
CCAAAGCCCCTTTAATCGATTCTTAGAGAAGAATTGGGTTGTTTTCCAAG
TCCCCGGGGGGCCGCTAAGGATTATTTATGAGTGGCATCCCCTCCGGATA
GGCACATTTAATCACAGTGTTGATATCGACAAAATACAGCTGGATTTAAC
GATTGATACGCCACTGGTTTTCAAGCACGCCCGCGGATCGACGAATGGAT
GTTTTCACAAGGGCGAGCTTTGGTTCCTCATCCACGGTACTACGTGGCAT
AAGGGACCAGGGCCAATCTACTACCATCGAATAGCTGTGTTAGACGGAAC
CACCTTGGATTTGAAGCGGTACACATACCCCTTTAAGCTTGAATCACAGT
ATGGGCCTGTTGAATTCTCTCTGGGGATGACCATAGATGCTAAAGATCGG
CTTTCTATTGCTTATAGTGTGTTTGATTCGTCGTCTGTAATTAGGCGGAT
TCCAATGTGGAAAGTTGAAGCGTTGATGAGAAAACACCAAAATCGGCTGC
CCCTTTTTCGAGAGGATCAGATAGCACGTGATACGAAAAATATCTGAAAT
TTTTATTCACAATCAGCTCTATATTATGTATGAGATTTATCAGCGGTGGT
CACGTCGCATATGCAATTTCTAGCTTCGAGTGGATTTCCTTAATCTGTG

protein sequence of jgi.p|Nanoce1779_2|256511

>mRNA_9633-protein ID=mRNA_9633-protein|Name=jgi.p|Nanoce1779_2|256511|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MIKINSMDNESEGLGVHLYISSSKAFCLLWSLIMAITLLLLIMPSGQVSR
EALSDQKEMNNTCQDVIAKLYTNASVLAIPLLSPSCTAPELGYLLYQRED
YVHAARLYEEMLGNGIPNTYVEIAAYRWLSGCYEHLGLSESAEFYARRAL
EIGGEVMPALNIATRLEEKGEIDEAAGQFRLACTLYLASQPLPKDGREQL
ESGDQRVLWPHTFSTGYLKKLQTLDAIGNDHEITDETRAQVHWELISLTR
PLLNCGEELFRRGGNYGNGQDYYFATPSILPHPTNPDEDHLIIARLINYR
IDSVGRYYKDYLPKDDKSGILRSACVLYTGRGADRGDVVRIMDGRFERVS
YRFLGTEDPRLFQLESGEIRVFWTSWEFSKYLGEGSRIISGVLHVNTSTI
YVDHLFQSPFNRFLEKNWVVFQVPGGPLRIIYEWHPLRIGTFNHSVDIDK
IQLDLTIDTPLVFKHARGSTNGCFHKGELWFLIHGTTWHKGPGPIYYHRI
AVLDGTTLDLKRYTYPFKLESQYGPVEFSLGMTIDAKDRLSIAYSVFDSS
SVIRRIPMWKVEALMRKHQNRLPLFREDQIARDTKNI*

mRNA from alignment at scaffold_31:143430..145883+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9633 ID=mRNA_9633|Name=jgi.p|Nanoce1779_2|256511|organism=Nannochloropsis oceanica|type=mRNA|length=2454bp|location=Sequence derived from alignment at scaffold_31:143430..145883+ (Nannochloropsis oceanica)
ATAGGATGAATCACAGTGCAACGAGCACACACAGGCATCGTCGTCATCCA
TGAGCGGGACATAATGAGGGGTGATCGTCCCTCGTAAACATCAAAAACAG
GTCTGACACCGATAGCAACATCCACCCAGAAGCCAGTTGGGTCGGTCGAG
GAGGCGTGAGGTTGAGGGAGCGCATCGCTTTCGAGATGATTTACTTTGCT
CTTGAAGCCTCGTGGGTCTCGGGCGGGCTTATTTTATTGCTCATAATATG
ATAAAGTAGAGGCCACCATGGCGGTGGCTTTGTCCGTGATGGCGATTAGT
ACCCCAGAAAATAAAAAATAAAATAAAAACTTTGGTCCGTAGGTAATTGC
CATGCATGCTGAATGACTGGCTAAGCATCTCACTTCCCCCCACGTCACTA
ATGATAATAATATTATTAATATAATAATGTAATCGGCAGAAGAAACGTGG
TTTCCGCGATGGACGCTGGGTAATTGAGATGGAATGACCATATCCATGAT
GACTCGGTGCTCTCTCCGATCATCCCGGCCCCCACCTCTACACCCATTTA
CACACTCTTAATGGCTACTACTTGAACTCAAAAAACAGATGATTAAGATC
AATTCGATGGATAATGAAAGCGAAGGGTTAGGTGTTCATTTATATATTTC
GTCATCGAAAGCATTTTGTTTACTTTGGTCACTTATTATGGCTATCACTT
TGCTCCTTTTAATCATGCCGTCGGGGCAAGTCTCCCGCGAAGCTTTGTCT
GATCAAAAAGAAATGAACAATACTTGTCAAGACGTAATCGCCAAGCTATA
CACAAACGCCTCGGTGCTGGCGATTCCTCTTTTAAGTCCATCTTGTACGG
CCCCGGAACTCGGCTACTTGCTCTACCAGCGTGAGGACTACGTCCATGCC
GCGCGTCTTTACGAGGAAATGCTGGGCAACGGGATACCAAATACATATGT
TGAGATTGCTGCTTATCGGTGGCTTTCGGGTTGTTACGAACATCTCGGTC
TCTCGGAGTCCGCAGAATTTTATGCGCGCAGAGCTTTGGAAATCGGAGGT
GAGGTTATGCCCGCACTGAATATAGCAACGCGCTTGGAGGAAAAGGGAGA
GATTGATGAAGCGGCCGGTCAGTTCAGGCTCGCTTGCACTTTGTATCTGG
CATCACAACCGCTTCCCAAGGATGGCCGAGAGCAGCTTGAATCCGGTGAC
CAACGCGTGCTGTGGCCACATACCTTTTCGACGGGATATCTGAAGAAGCT
GCAGACACTTGATGCCATCGGGAATGATCACGAAATCACCGATGAAACAC
GGGCTCAGGTCCATTGGGAGTTGATTTCTCTAACGCGGCCTCTATTGAAT
TGTGGTGAGGAGCTCTTTCGCCGCGGAGGCAATTACGGTAACGGACAGGA
CTATTATTTTGCGACGCCTTCGATCCTGCCGCACCCGACCAACCCGGATG
AGGACCACCTTATTATCGCGCGACTTATAAATTATCGCATCGACTCCGTA
GGACGTTATTACAAGGATTATCTACCAAAAGATGATAAGAGCGGTATCCT
GCGTAGCGCGTGTGTGCTTTATACCGGTCGTGGTGCAGATCGTGGCGACG
TGGTGCGCATCATGGACGGGCGATTTGAAAGGGTATCATATCGTTTCCTA
GGCACCGAGGATCCTCGGCTATTTCAATTGGAATCAGGGGAGATTCGCGT
TTTTTGGACTAGCTGGGAATTTTCCAAGTACCTTGGTGAAGGGTCAAGGA
TAATAAGCGGAGTCCTACACGTCAATACTTCTACCATTTATGTGGACCAC
CTCTTCCAAAGCCCCTTTAATCGATTCTTAGAGAAGAATTGGGTTGTTTT
CCAAGTCCCCGGGGGGCCGCTAAGGATTATTTATGAGTGGCATCCCCTCC
GGATAGGCACATTTAATCACAGTGTTGATATCGACAAAATACAGCTGGAT
TTAACGATTGATACGCCACTGGTTTTCAAGCACGCCCGCGGATCGACGAA
TGGATGTTTTCACAAGGGCGAGCTTTGGTTCCTCATCCACGGTACTACGT
GGCATAAGGGACCAGGGCCAATCTACTACCATCGAATAGCTGTGTTAGAC
GGAACCACCTTGGATTTGAAGCGGTACACATACCCCTTTAAGCTTGAATC
ACAGTATGGGCCTGTTGAATTCTCTCTGGGGATGACCATAGATGCTAAAG
ATCGGCTTTCTATTGCTTATAGTGTGTTTGATTCGTCGTCTGTAATTAGG
CGGATTCCAATGTGGAAAGTTGAAGCGTTGATGAGAAAACACCAAAATCG
GCTGCCCCTTTTTCGAGAGGATCAGATAGCACGTGATACGAAAAATATCT
GAAATTTTTATTCACAATCAGCTCTATATTATGTATGAGATTTATCAGCG
GTGGTCACGTCGCATATGCAATTTCTAGCTTCGAGTGGATTTCCTTAATC
TGTG

Coding sequence (CDS) from alignment at scaffold_31:143430..145883+

>mRNA_9633 ID=mRNA_9633|Name=jgi.p|Nanoce1779_2|256511|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_31:143430..145883+ (Nannochloropsis oceanica)
ATGATTAAGATCAATTCGATGGATAATGAAAGCGAAGGGTTAGGTGTTCA
TTTATATATTTCGTCATCGAAAGCATTTTGTTTACTTTGGTCACTTATTA
TGGCTATCACTTTGCTCCTTTTAATCATGCCGTCGGGGCAAGTCTCCCGC
GAAGCTTTGTCTGATCAAAAAGAAATGAACAATACTTGTCAAGACGTAAT
CGCCAAGCTATACACAAACGCCTCGGTGCTGGCGATTCCTCTTTTAAGTC
CATCTTGTACGGCCCCGGAACTCGGCTACTTGCTCTACCAGCGTGAGGAC
TACGTCCATGCCGCGCGTCTTTACGAGGAAATGCTGGGCAACGGGATACC
AAATACATATGTTGAGATTGCTGCTTATCGGTGGCTTTCGGGTTGTTACG
AACATCTCGGTCTCTCGGAGTCCGCAGAATTTTATGCGCGCAGAGCTTTG
GAAATCGGAGGTGAGGTTATGCCCGCACTGAATATAGCAACGCGCTTGGA
GGAAAAGGGAGAGATTGATGAAGCGGCCGGTCAGTTCAGGCTCGCTTGCA
CTTTGTATCTGGCATCACAACCGCTTCCCAAGGATGGCCGAGAGCAGCTT
GAATCCGGTGACCAACGCGTGCTGTGGCCACATACCTTTTCGACGGGATA
TCTGAAGAAGCTGCAGACACTTGATGCCATCGGGAATGATCACGAAATCA
CCGATGAAACACGGGCTCAGGTCCATTGGGAGTTGATTTCTCTAACGCGG
CCTCTATTGAATTGTGGTGAGGAGCTCTTTCGCCGCGGAGGCAATTACGG
TAACGGACAGGACTATTATTTTGCGACGCCTTCGATCCTGCCGCACCCGA
CCAACCCGGATGAGGACCACCTTATTATCGCGCGACTTATAAATTATCGC
ATCGACTCCGTAGGACGTTATTACAAGGATTATCTACCAAAAGATGATAA
GAGCGGTATCCTGCGTAGCGCGTGTGTGCTTTATACCGGTCGTGGTGCAG
ATCGTGGCGACGTGGTGCGCATCATGGACGGGCGATTTGAAAGGGTATCA
TATCGTTTCCTAGGCACCGAGGATCCTCGGCTATTTCAATTGGAATCAGG
GGAGATTCGCGTTTTTTGGACTAGCTGGGAATTTTCCAAGTACCTTGGTG
AAGGGTCAAGGATAATAAGCGGAGTCCTACACGTCAATACTTCTACCATT
TATGTGGACCACCTCTTCCAAAGCCCCTTTAATCGATTCTTAGAGAAGAA
TTGGGTTGTTTTCCAAGTCCCCGGGGGGCCGCTAAGGATTATTTATGAGT
GGCATCCCCTCCGGATAGGCACATTTAATCACAGTGTTGATATCGACAAA
ATACAGCTGGATTTAACGATTGATACGCCACTGGTTTTCAAGCACGCCCG
CGGATCGACGAATGGATGTTTTCACAAGGGCGAGCTTTGGTTCCTCATCC
ACGGTACTACGTGGCATAAGGGACCAGGGCCAATCTACTACCATCGAATA
GCTGTGTTAGACGGAACCACCTTGGATTTGAAGCGGTACACATACCCCTT
TAAGCTTGAATCACAGTATGGGCCTGTTGAATTCTCTCTGGGGATGACCA
TAGATGCTAAAGATCGGCTTTCTATTGCTTATAGTGTGTTTGATTCGTCG
TCTGTAATTAGGCGGATTCCAATGTGGAAAGTTGAAGCGTTGATGAGAAA
ACACCAAAATCGGCTGCCCCTTTTTCGAGAGGATCAGATAGCACGTGATA
CGAAAAATATCTGA

Synonyms

Publications