jgi.p|Nanoce1779_2|605267, mRNA_9630 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605267
Unique Name	mRNA_9630
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2178
Alignment location	scaffold_31:135026..137203 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605353
Track	FilteredModels2
ProteinId	605267

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:135026..137203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605267	gene_9630	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605267	mRNA_9630-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9630	CDS_9630	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:135026..137203+
coding sequence from alignment at scaffold_31:135026..137203+

mRNA sequence

>mRNA_9630 ID=mRNA_9630|Name=jgi.p|Nanoce1779_2|605267|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp
CCTCAAGCTGCGGTCACCATGCACGCTGCCTTTCCGATGCTCAGGTAGAC
AGAGATGGTCAGACCTTCGCGATGGACTCTGCGGGTGACTTCCCCCTCTC
CCTTCCTTCCTCCATGCCTTGTTTTATCCCTTCGTCATTCGACGGTCTTT
TGCTTGCCCCCTTGACGACGCCCTCTGCCGGTCCTTTGAGCACGCAGACA
CCACTTGCCTTTTCCCCCATCTAGGTGGTTGTGGGAATACCTGAATGTGG
TCACCAAGGCAAGATTTCGAGCGGGAGGCTGTCTTTCGAAGGACGAGATG
GAAAGCATACTTCAGGAGGCATGGCGGAGACAATGACAGAAATGCAGGAA
AGATTCGCCTTGTCGTCTTTCATGAAATTCAAGTGTGGTATGGAGAAGCA
GAAACAGACACACAGAGCAGACCTTCGATTTCTCTCTTCCAACACGTGCT
ATCTCTGCATGCTTTGCAAACAACAACTTGTTCTGCAAACAACAACTTGT
TTTCCGGACGTCCGAACACGTCCCGGACGTTCCTGTCTCCTTGCCCATAG
GTCTTTATTTTGGGGGGACTATGTCTCTTCCCATGTTACAAACCACAAAA
TGTGCTGCATACAAGGAAGTCGTGTACTGTTTCAAAACTAGGGAAGTGTG
TCGCCTAGGTAATGATAGGGTGTATCTGTGGCGCAGGCATGTACCATGAG
CGTATTCAGATAATGCGTTTGTGCACGTGACGCAGGCAGGTACCACTCTT
CCCTTCAACTCCAGGAGAGGAGCACAGGAGCGCGAGGAAGCGAGCGATAG
ATGCCGCTGAAAACAAAGTCCACAAGTTGTCATGGCAATTCTGACGATGT
TTGTTGGAAAGGCAGGGGATACATGGTTCGTATTTGTCCTTCCTTTCTTC
CTTCGTCTTTGCCAGCCTCTTCTCTTCCTCGAGCCCTTTCTCCTCCTCTT
CGACTTCCAGCCTATCCTCTCCGAGGTAGAACTCTGAATGGGATAGCATG
TTTTTCTTTCACCCCTCCTCTTTCAAAAAGACGTGAGTTAGGACCTGGGA
CTGTAAAGCACACAGCAAGCACACGACGAGGAGGCTTGCTGCAAGACAGC
TTGAACGTGGTGAGCACGTTTTGTCCCCGTCGTATTTTTCCCTCCTTGTT
TCACCAAGGTCATGAAAAAGGATTTGGTGCTTCAAGTCTGTGGAAACAGC
GCACTCTTCGGTGGAACCTATCGTGGCCCTGTCGACTTCCAAGCGAGATC
GCACTCGCATTGTTCTACGACGCCGGCAGTTGGGTGGGCAATGTGTTGTA
TCGTTTTGATTTGTTCTGGTTTTCAATATTGATTTCGGTCTCGTCGCTAT
GATAGAAGTAGATGCCATCGTGCCCCGGTGGCAAGGCTCGTGATGGTAGA
TTAAAACCCCCAAAAAAGAGCAAAATACGTACATAACTTTCTGTGTAGTC
CGTCATGAGACGAAGGGGAGGACGTCTTTGTCTTTGATCTCTACTTTTCG
CCAACAATTTGTGAGAGGATAAAGGGGGGGAGATCCAGATTAAAAATCTC
TGCGCATTGGGCAAAGGATTTACGAGCAGCCTCGATCGGTTTGTATTTCT
CTAGGCAGGGAGGAATGGAGGCATTATTATTGTATTGTCCTGTCATTCCC
TCTTCTACATAGAACGAACGTGGGCAACATTCGATAGAGAACAAGTGCAT
GACATTCTGATCGCCCTTCCATGGACGTCCTTTTACTTCATGGCCTGTGG
TCCCACGTCAGATGTGGAGATGTCGCTTGCTTATCTTGCTTCCCAGTTGT
AACGTCAGGGCTGAGCAAGGGAAGGGGAGAATATCGTCCGAGGTAGAAGT
GGTGCTTAAATGGAAAATGACAAAAATACTTTTCAAGCATGACGTTTGGA
TATGTGATTGGGTGGAGCCTCCACCGTGGAGGTGCACTCTGTAAAAATAT
GTCAAGGCAAGCCAAGGAAAGATGACGTTGTGCAAGCGGGAGCATCGAGA
TGGCAAAGATATTGTCCGAGCAGGGATTATTATTTATTATCATCTCTCGT
TAACAGGTGGGCAGGCTTTCTTTGCAGGAAGACTTGAGGTGGGTGTGGAG
GGCTGGTAGTATCGTGATTGTATGGGTGTGGTATGCATCGTACGATAAAA
AGGGGGGAGAGAACGGGGTGTGGCCGTG

protein sequence of jgi.p|Nanoce1779_2|605267

>mRNA_9630-protein ID=mRNA_9630-protein|Name=jgi.p|Nanoce1779_2|605267|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MPLKTKSTSCHGNSDDVCWKGRGYMVRICPSFLPSSLPASSLPRALSPPL
RLPAYPLRGRTLNGIACFSFTPPLSKRRELGPGTVKHTASTRRGGLLQDS
LNVVSTFCPRRIFPSLFHQGHEKGFGASSLWKQRTLRWNLSWPCRLPSEI
ALALFYDAGSWVGNVLYRFDLFWFSILISVSSL*

mRNA from alignment at scaffold_31:135026..137203+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9630 ID=mRNA_9630|Name=jgi.p|Nanoce1779_2|605267|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at scaffold_31:135026..137203+ (Nannochloropsis oceanica)
CCTCAAGCTGCGGTCACCATGCACGCTGCCTTTCCGATGCTCAGGTAGAC
AGAGATGGTCAGACCTTCGCGATGGACTCTGCGGGTGACTTCCCCCTCTC
CCTTCCTTCCTCCATGCCTTGTTTTATCCCTTCGTCATTCGACGGTCTTT
TGCTTGCCCCCTTGACGACGCCCTCTGCCGGTCCTTTGAGCACGCAGACA
CCACTTGCCTTTTCCCCCATCTAGGTGGTTGTGGGAATACCTGAATGTGG
TCACCAAGGCAAGATTTCGAGCGGGAGGCTGTCTTTCGAAGGACGAGATG
GAAAGCATACTTCAGGAGGCATGGCGGAGACAATGACAGAAATGCAGGAA
AGATTCGCCTTGTCGTCTTTCATGAAATTCAAGTGTGGTATGGAGAAGCA
GAAACAGACACACAGAGCAGACCTTCGATTTCTCTCTTCCAACACGTGCT
ATCTCTGCATGCTTTGCAAACAACAACTTGTTCTGCAAACAACAACTTGT
TTTCCGGACGTCCGAACACGTCCCGGACGTTCCTGTCTCCTTGCCCATAG
GTCTTTATTTTGGGGGGACTATGTCTCTTCCCATGTTACAAACCACAAAA
TGTGCTGCATACAAGGAAGTCGTGTACTGTTTCAAAACTAGGGAAGTGTG
TCGCCTAGGTAATGATAGGGTGTATCTGTGGCGCAGGCATGTACCATGAG
CGTATTCAGATAATGCGTTTGTGCACGTGACGCAGGCAGGTACCACTCTT
CCCTTCAACTCCAGGAGAGGAGCACAGGAGCGCGAGGAAGCGAGCGATAG
ATGCCGCTGAAAACAAAGTCCACAAGTTGTCATGGCAATTCTGACGATGT
TTGTTGGAAAGGCAGGGGATACATGGTTCGTATTTGTCCTTCCTTTCTTC
CTTCGTCTTTGCCAGCCTCTTCTCTTCCTCGAGCCCTTTCTCCTCCTCTT
CGACTTCCAGCCTATCCTCTCCGAGGTAGAACTCTGAATGGGATAGCATG
TTTTTCTTTCACCCCTCCTCTTTCAAAAAGACGTGAGTTAGGACCTGGGA
CTGTAAAGCACACAGCAAGCACACGACGAGGAGGCTTGCTGCAAGACAGC
TTGAACGTGGTGAGCACGTTTTGTCCCCGTCGTATTTTTCCCTCCTTGTT
TCACCAAGGTCATGAAAAAGGATTTGGTGCTTCAAGTCTGTGGAAACAGC
GCACTCTTCGGTGGAACCTATCGTGGCCCTGTCGACTTCCAAGCGAGATC
GCACTCGCATTGTTCTACGACGCCGGCAGTTGGGTGGGCAATGTGTTGTA
TCGTTTTGATTTGTTCTGGTTTTCAATATTGATTTCGGTCTCGTCGCTAT
GATAGAAGTAGATGCCATCGTGCCCCGGTGGCAAGGCTCGTGATGGTAGA
TTAAAACCCCCAAAAAAGAGCAAAATACGTACATAACTTTCTGTGTAGTC
CGTCATGAGACGAAGGGGAGGACGTCTTTGTCTTTGATCTCTACTTTTCG
CCAACAATTTGTGAGAGGATAAAGGGGGGGAGATCCAGATTAAAAATCTC
TGCGCATTGGGCAAAGGATTTACGAGCAGCCTCGATCGGTTTGTATTTCT
CTAGGCAGGGAGGAATGGAGGCATTATTATTGTATTGTCCTGTCATTCCC
TCTTCTACATAGAACGAACGTGGGCAACATTCGATAGAGAACAAGTGCAT
GACATTCTGATCGCCCTTCCATGGACGTCCTTTTACTTCATGGCCTGTGG
TCCCACGTCAGATGTGGAGATGTCGCTTGCTTATCTTGCTTCCCAGTTGT
AACGTCAGGGCTGAGCAAGGGAAGGGGAGAATATCGTCCGAGGTAGAAGT
GGTGCTTAAATGGAAAATGACAAAAATACTTTTCAAGCATGACGTTTGGA
TATGTGATTGGGTGGAGCCTCCACCGTGGAGGTGCACTCTGTAAAAATAT
GTCAAGGCAAGCCAAGGAAAGATGACGTTGTGCAAGCGGGAGCATCGAGA
TGGCAAAGATATTGTCCGAGCAGGGATTATTATTTATTATCATCTCTCGT
TAACAGGTGGGCAGGCTTTCTTTGCAGGAAGACTTGAGGTGGGTGTGGAG
GGCTGGTAGTATCGTGATTGTATGGGTGTGGTATGCATCGTACGATAAAA
AGGGGGGAGAGAACGGGGTGTGGCCGTG

Coding sequence (CDS) from alignment at scaffold_31:135026..137203+

>mRNA_9630 ID=mRNA_9630|Name=jgi.p|Nanoce1779_2|605267|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_31:135026..137203+ (Nannochloropsis oceanica)
ATGCCGCTGAAAACAAAGTCCACAAGTTGTCATGGCAATTCTGACGATGT
TTGTTGGAAAGGCAGGGGATACATGGTTCGTATTTGTCCTTCCTTTCTTC
CTTCGTCTTTGCCAGCCTCTTCTCTTCCTCGAGCCCTTTCTCCTCCTCTT
CGACTTCCAGCCTATCCTCTCCGAGGTAGAACTCTGAATGGGATAGCATG
TTTTTCTTTCACCCCTCCTCTTTCAAAAAGACGTGAGTTAGGACCTGGGA
CTGTAAAGCACACAGCAAGCACACGACGAGGAGGCTTGCTGCAAGACAGC
TTGAACGTGGTGAGCACGTTTTGTCCCCGTCGTATTTTTCCCTCCTTGTT
TCACCAAGGTCATGAAAAAGGATTTGGTGCTTCAAGTCTGTGGAAACAGC
GCACTCTTCGGTGGAACCTATCGTGGCCCTGTCGACTTCCAAGCGAGATC
GCACTCGCATTGTTCTACGACGCCGGCAGTTGGGTGGGCAATGTGTTGTA
TCGTTTTGATTTGTTCTGGTTTTCAATATTGATTTCGGTCTCGTCGCTAT
GA

Synonyms

Publications