jgi.p|Nanoce1779_2|574808, mRNA_963 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574808
Unique NamemRNA_963
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2355
Alignment locationscaffold_2:864378..866732 -

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Properties
Property NameValue
TranscriptId574894
TrackFilteredModels2
ProteinId574808
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:864378..866732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574808gene_963Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574808mRNA_963-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_963CDS_963Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_963 ID=mRNA_963|Name=jgi.p|Nanoce1779_2|574808|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp
ACAGAGAAAGTATCCTTAATCCCTTCCAAGCTAGCAATCATGGCGGGCGT
GGTGGTGGACGATGGTGTGATCGAATCCGACTATGGCTTCATTCACCGCG
TATCGGGCCCGCTGGTCATTGCCGACAACATGCAAGGTGCGGCCATGTAC
GAGCTAGTGCGTGTGGGTCATCAGATGCTGGTCGGAGAGATCATCAAGCT
TGAGGGCACCACAGCTTCCATCCAGGTTTACGAGGACACGGCTGGCTTGA
CTGTGGGTGACCCTGTCCTCCGGAAGCGCCAGCCCCTGTCGCTGGAGCTT
GGGCCTGGCATCATGGGCACGATCTTCGACGGGATTCAGCGGCCTTTGGA
AGACATTTTCCGGCGTGACCAGAATGTGTACATCCCGCGCGGGGCGGATA
TCCCTTCCTTGGACCCCACCAAGCAGTGGCAGTACACCCCTGTGTCGGGC
CTCCGCGAGGGTATGGCCTTATCCGGTGGCGACATTTTCGGGACCGTCTA
CGAGAACGAGATCATGACCTCGCACAAGATTATGGTCCCTCCCAATATTT
ACGGGAAGGTCAAGAAGGTGTATGGTATGGGGGGGGACAAGAAGGATTCT
TATAACGTCGAGGAAACGGTGCTGGAGGTGGAGAACGAGACGACCAAGCA
AGTGCACAAGCTCAAGCTCTCTCACTTCTGGCCCGTCCGTCGTCCCCGCC
CCGTCGTGGCCAAGCTTCCGGGTAAGAGTGCTTTAACTACTGGCTTGCGC
GTGGTCGATGCCATCTTCCCCTCTGTTCAGGGAGGGACGGTGGCGGTGCC
TGGTGCGTTTGGGTGCGGCAAGACAGTCATTTCTCAGTCCCTCTCCAAGT
TTTCCAATTCGGACGCCATTGTGTATGTCGGTTGCGGGGAGCGCGGGAAT
GAGATGGCGGAGGTGTTGTCGGAATTCCCGGAGTTGAAATTGGATATTAA
TGGGAAAGAGGTCGGGATCATGAATCGCACCTGCTTGGTAGCTAACACGT
CTAACATGCCCGTGGCAGCTCGAGAAGCCTCGATTTATACTGGTATTACA
TTGGCGGAGTACTTGCGTGATATGGGCATGAATGTGTCGATGATGGCTGA
TTCCACCTCGCGATGGGCGGAGGCGTTGCGTGAGATTTCGGGGCGCTTGG
GGGAGATGCCTGCCGATTCCGGGTATCCTGCTTATTTGGGTGCGCGTTTG
GCTGCTTTCTATGAACGTGCTGGTCGCGTGAAGGCGCTCGGCTCGCCTGA
GAGGGAGGGGACAGTGACGGTGGTGGGAGCTGTGTCACCCCCCGGTGGTG
ATTTCTCAGATCCCGTCACGGCGGCTACTTTGTCAATTGTTCAGGTGTTC
TGGGGATTGGACAAAAAATTGGCGCAACGCAAGCATTTCCCTTCGGTGAA
TTGGCTGATTTCATACACGAAGTATATGCGCGTCCTCGAACCGTTCTTTA
ACGGCATTGACCCTCAGTACTCGGAGCTTCAGAAGCGGACGCGTGAGATC
CTGCAGGTGGAGGAGAATCTGTCGGAAATCGTGCAGCTGGTGGGAAAAGA
GTCTCTGTCTGAAGACCAAAAAGTTTCCATGGAGATCGCGCGTATCATCC
GCGAGGATTTCTTGCAGCAAAACGCGTTCTCGTCTTACGATTACACCTGC
CCGATTAATAAGTCGATTGGGATGCTCCGGGCCATTATCACTCTCTACAA
CTGCTCTCAGAAGGCGATTGCTGATTCCCCGGCGAACCAGAAAGTGACTT
GGGCCTACATCAAGACGGCCTTGGCTCCCGTTATTCAGAAAGTGATTGAG
GGCAAGTTCCAAGAGCCCAAGAATTCGCCTGAGCAACTGCAGGCCTACTA
TAATGATGTGGCGACGGAGGTGGAATTGGCGTTCCAGACGCTATCTGGGC
CGTAGAGGAGGAACGAAGAGAGGGAAGGACGGGTCTCTTTCTGATGAGGG
AAAAGAGAGGTTCGTAGTAAGTGTGCTATGGTTTGTGTAGTTTACTTTGA
AGGGCGGAAGGGCAAGGAAGGGAAGCAGCGCGCGCCTACCAGCAGCAGCA
ACTTAGACCGCCCTTTTCATGAAAGGAGAGACGGCAATGCCTTTCTTTGT
GTGGGTTTTTGTGGGTGGATACACCCTCCAGGGATCGAGGAGGAGAGTGT
GAAATGGTCGCGATGACCACATATAATTATTTGATAGATTTTCCAAAAAC
AGAAGCGATGCATTCGTTTATTCTTCAGCAATCAAAATTTACTGGCCGAG
GGGGACAACAAAAATGGCGACAAGAGGGAGAAATGGGTCGGCGAATAGCA
AGGTGAAGACGAGGAGTAGAGTGAAGAGAGGTCCCACGTGATGACAACAG
ACCAA
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protein sequence of jgi.p|Nanoce1779_2|574808

>mRNA_963-protein ID=mRNA_963-protein|Name=jgi.p|Nanoce1779_2|574808|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MAGVVVDDGVIESDYGFIHRVSGPLVIADNMQGAAMYELVRVGHQMLVGE
IIKLEGTTASIQVYEDTAGLTVGDPVLRKRQPLSLELGPGIMGTIFDGIQ
RPLEDIFRRDQNVYIPRGADIPSLDPTKQWQYTPVSGLREGMALSGGDIF
GTVYENEIMTSHKIMVPPNIYGKVKKVYGMGGDKKDSYNVEETVLEVENE
TTKQVHKLKLSHFWPVRRPRPVVAKLPGKSALTTGLRVVDAIFPSVQGGT
VAVPGAFGCGKTVISQSLSKFSNSDAIVYVGCGERGNEMAEVLSEFPELK
LDINGKEVGIMNRTCLVANTSNMPVAAREASIYTGITLAEYLRDMGMNVS
MMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVKAL
GSPEREGTVTVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHF
PSVNWLISYTKYMRVLEPFFNGIDPQYSELQKRTREILQVEENLSEIVQL
VGKESLSEDQKVSMEIARIIREDFLQQNAFSSYDYTCPINKSIGMLRAII
TLYNCSQKAIADSPANQKVTWAYIKTALAPVIQKVIEGKFQEPKNSPEQL
QAYYNDVATEVELAFQTLSGP*
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mRNA from alignment at scaffold_2:864378..866732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_963 ID=mRNA_963|Name=jgi.p|Nanoce1779_2|574808|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp|location=Sequence derived from alignment at scaffold_2:864378..866732- (Nannochloropsis oceanica)
ACAGAGAAAGTATCCTTAATCCCTTCCAAGCTAGCAATCATGGCGGGCGT
GGTGGTGGACGATGGTGTGATCGAATCCGACTATGGCTTCATTCACCGCG
TATCGGGCCCGCTGGTCATTGCCGACAACATGCAAGGTGCGGCCATGTAC
GAGCTAGTGCGTGTGGGTCATCAGATGCTGGTCGGAGAGATCATCAAGCT
TGAGGGCACCACAGCTTCCATCCAGGTTTACGAGGACACGGCTGGCTTGA
CTGTGGGTGACCCTGTCCTCCGGAAGCGCCAGCCCCTGTCGCTGGAGCTT
GGGCCTGGCATCATGGGCACGATCTTCGACGGGATTCAGCGGCCTTTGGA
AGACATTTTCCGGCGTGACCAGAATGTGTACATCCCGCGCGGGGCGGATA
TCCCTTCCTTGGACCCCACCAAGCAGTGGCAGTACACCCCTGTGTCGGGC
CTCCGCGAGGGTATGGCCTTATCCGGTGGCGACATTTTCGGGACCGTCTA
CGAGAACGAGATCATGACCTCGCACAAGATTATGGTCCCTCCCAATATTT
ACGGGAAGGTCAAGAAGGTGTATGGTATGGGGGGGGACAAGAAGGATTCT
TATAACGTCGAGGAAACGGTGCTGGAGGTGGAGAACGAGACGACCAAGCA
AGTGCACAAGCTCAAGCTCTCTCACTTCTGGCCCGTCCGTCGTCCCCGCC
CCGTCGTGGCCAAGCTTCCGGGTAAGAGTGCTTTAACTACTGGCTTGCGC
GTGGTCGATGCCATCTTCCCCTCTGTTCAGGGAGGGACGGTGGCGGTGCC
TGGTGCGTTTGGGTGCGGCAAGACAGTCATTTCTCAGTCCCTCTCCAAGT
TTTCCAATTCGGACGCCATTGTGTATGTCGGTTGCGGGGAGCGCGGGAAT
GAGATGGCGGAGGTGTTGTCGGAATTCCCGGAGTTGAAATTGGATATTAA
TGGGAAAGAGGTCGGGATCATGAATCGCACCTGCTTGGTAGCTAACACGT
CTAACATGCCCGTGGCAGCTCGAGAAGCCTCGATTTATACTGGTATTACA
TTGGCGGAGTACTTGCGTGATATGGGCATGAATGTGTCGATGATGGCTGA
TTCCACCTCGCGATGGGCGGAGGCGTTGCGTGAGATTTCGGGGCGCTTGG
GGGAGATGCCTGCCGATTCCGGGTATCCTGCTTATTTGGGTGCGCGTTTG
GCTGCTTTCTATGAACGTGCTGGTCGCGTGAAGGCGCTCGGCTCGCCTGA
GAGGGAGGGGACAGTGACGGTGGTGGGAGCTGTGTCACCCCCCGGTGGTG
ATTTCTCAGATCCCGTCACGGCGGCTACTTTGTCAATTGTTCAGGTGTTC
TGGGGATTGGACAAAAAATTGGCGCAACGCAAGCATTTCCCTTCGGTGAA
TTGGCTGATTTCATACACGAAGTATATGCGCGTCCTCGAACCGTTCTTTA
ACGGCATTGACCCTCAGTACTCGGAGCTTCAGAAGCGGACGCGTGAGATC
CTGCAGGTGGAGGAGAATCTGTCGGAAATCGTGCAGCTGGTGGGAAAAGA
GTCTCTGTCTGAAGACCAAAAAGTTTCCATGGAGATCGCGCGTATCATCC
GCGAGGATTTCTTGCAGCAAAACGCGTTCTCGTCTTACGATTACACCTGC
CCGATTAATAAGTCGATTGGGATGCTCCGGGCCATTATCACTCTCTACAA
CTGCTCTCAGAAGGCGATTGCTGATTCCCCGGCGAACCAGAAAGTGACTT
GGGCCTACATCAAGACGGCCTTGGCTCCCGTTATTCAGAAAGTGATTGAG
GGCAAGTTCCAAGAGCCCAAGAATTCGCCTGAGCAACTGCAGGCCTACTA
TAATGATGTGGCGACGGAGGTGGAATTGGCGTTCCAGACGCTATCTGGGC
CGTAGAGGAGGAACGAAGAGAGGGAAGGACGGGTCTCTTTCTGATGAGGG
AAAAGAGAGGTTCGTAGTAAGTGTGCTATGGTTTGTGTAGTTTACTTTGA
AGGGCGGAAGGGCAAGGAAGGGAAGCAGCGCGCGCCTACCAGCAGCAGCA
ACTTAGACCGCCCTTTTCATGAAAGGAGAGACGGCAATGCCTTTCTTTGT
GTGGGTTTTTGTGGGTGGATACACCCTCCAGGGATCGAGGAGGAGAGTGT
GAAATGGTCGCGATGACCACATATAATTATTTGATAGATTTTCCAAAAAC
AGAAGCGATGCATTCGTTTATTCTTCAGCAATCAAAATTTACTGGCCGAG
GGGGACAACAAAAATGGCGACAAGAGGGAGAAATGGGTCGGCGAATAGCA
AGGTGAAGACGAGGAGTAGAGTGAAGAGAGGTCCCACGTGATGACAACAG
ACCAA
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Coding sequence (CDS) from alignment at scaffold_2:864378..866732-

>mRNA_963 ID=mRNA_963|Name=jgi.p|Nanoce1779_2|574808|organism=Nannochloropsis oceanica|type=CDS|length=1866bp|location=Sequence derived from alignment at scaffold_2:864378..866732- (Nannochloropsis oceanica)
ATGGCGGGCGTGGTGGTGGACGATGGTGTGATCGAATCCGACTATGGCTT
CATTCACCGCGTATCGGGCCCGCTGGTCATTGCCGACAACATGCAAGGTG
CGGCCATGTACGAGCTAGTGCGTGTGGGTCATCAGATGCTGGTCGGAGAG
ATCATCAAGCTTGAGGGCACCACAGCTTCCATCCAGGTTTACGAGGACAC
GGCTGGCTTGACTGTGGGTGACCCTGTCCTCCGGAAGCGCCAGCCCCTGT
CGCTGGAGCTTGGGCCTGGCATCATGGGCACGATCTTCGACGGGATTCAG
CGGCCTTTGGAAGACATTTTCCGGCGTGACCAGAATGTGTACATCCCGCG
CGGGGCGGATATCCCTTCCTTGGACCCCACCAAGCAGTGGCAGTACACCC
CTGTGTCGGGCCTCCGCGAGGGTATGGCCTTATCCGGTGGCGACATTTTC
GGGACCGTCTACGAGAACGAGATCATGACCTCGCACAAGATTATGGTCCC
TCCCAATATTTACGGGAAGGTCAAGAAGGTGTATGGTATGGGGGGGGACA
AGAAGGATTCTTATAACGTCGAGGAAACGGTGCTGGAGGTGGAGAACGAG
ACGACCAAGCAAGTGCACAAGCTCAAGCTCTCTCACTTCTGGCCCGTCCG
TCGTCCCCGCCCCGTCGTGGCCAAGCTTCCGGGTAAGAGTGCTTTAACTA
CTGGCTTGCGCGTGGTCGATGCCATCTTCCCCTCTGTTCAGGGAGGGACG
GTGGCGGTGCCTGGTGCGTTTGGGTGCGGCAAGACAGTCATTTCTCAGTC
CCTCTCCAAGTTTTCCAATTCGGACGCCATTGTGTATGTCGGTTGCGGGG
AGCGCGGGAATGAGATGGCGGAGGTGTTGTCGGAATTCCCGGAGTTGAAA
TTGGATATTAATGGGAAAGAGGTCGGGATCATGAATCGCACCTGCTTGGT
AGCTAACACGTCTAACATGCCCGTGGCAGCTCGAGAAGCCTCGATTTATA
CTGGTATTACATTGGCGGAGTACTTGCGTGATATGGGCATGAATGTGTCG
ATGATGGCTGATTCCACCTCGCGATGGGCGGAGGCGTTGCGTGAGATTTC
GGGGCGCTTGGGGGAGATGCCTGCCGATTCCGGGTATCCTGCTTATTTGG
GTGCGCGTTTGGCTGCTTTCTATGAACGTGCTGGTCGCGTGAAGGCGCTC
GGCTCGCCTGAGAGGGAGGGGACAGTGACGGTGGTGGGAGCTGTGTCACC
CCCCGGTGGTGATTTCTCAGATCCCGTCACGGCGGCTACTTTGTCAATTG
TTCAGGTGTTCTGGGGATTGGACAAAAAATTGGCGCAACGCAAGCATTTC
CCTTCGGTGAATTGGCTGATTTCATACACGAAGTATATGCGCGTCCTCGA
ACCGTTCTTTAACGGCATTGACCCTCAGTACTCGGAGCTTCAGAAGCGGA
CGCGTGAGATCCTGCAGGTGGAGGAGAATCTGTCGGAAATCGTGCAGCTG
GTGGGAAAAGAGTCTCTGTCTGAAGACCAAAAAGTTTCCATGGAGATCGC
GCGTATCATCCGCGAGGATTTCTTGCAGCAAAACGCGTTCTCGTCTTACG
ATTACACCTGCCCGATTAATAAGTCGATTGGGATGCTCCGGGCCATTATC
ACTCTCTACAACTGCTCTCAGAAGGCGATTGCTGATTCCCCGGCGAACCA
GAAAGTGACTTGGGCCTACATCAAGACGGCCTTGGCTCCCGTTATTCAGA
AAGTGATTGAGGGCAAGTTCCAAGAGCCCAAGAATTCGCCTGAGCAACTG
CAGGCCTACTATAATGATGTGGCGACGGAGGTGGAATTGGCGTTCCAGAC
GCTATCTGGGCCGTAG
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Synonyms
Publications