jgi.p|Nanoce1779_2|642305, mRNA_9626 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642305
Unique NamemRNA_9626
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1593
Alignment locationscaffold_31:118890..120482 -

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Properties
Property NameValue
TranscriptId642391
TrackFilteredModels2
ProteinId642305
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:118890..120482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642305gene_9626Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9626CDS_9626Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642305mRNA_9626-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9626 ID=mRNA_9626|Name=jgi.p|Nanoce1779_2|642305|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATGGGCGCCGTCCTCTTCCACCAGTGGTACCCAAGCCAATCCCTCAAGCC
TAGTCCCCCAGCCAGCGGCGGCGCGGCGCTTTACCCCTTGGCATGGGTCT
ACCGGAATGGAGACGAGTGGTGGGGTGGACTCAAGGCTATCCAGCGGAAT
ACCTCCCGCACTGCCCACTACAAGCCCTTGCGCGAGTTTTTGGAAGGTAC
TTTCGACGAAGCGGAGGCGGCGGTGGGAGAGATGAAGGAGGAGAATGGTG
TGGCAGAGTTCTCCTCGATTCCACCCTCTTCCTTTATTATTTACTGCCTG
GATTTCGAGACGCAAAGTGTGGTGTTCATGGAGATGGAGCCAGGGGCGAA
TTTGTTGGAGGAACCCTTTATGGATCGAGGTGTACGGCACCTGGCGGGGA
AGCACGTGCTGGTGGCATCATTTGATACCGTGGAGGACTACCTGCGGCAG
AAAGAAGCTGAAAAGCAGCAGCAACAGCTTGGAGGAGACAATAAAGAACA
CTTTTTGTGGGTTTGGAATACCGGGAGGTGCGGCTCTACCCTTCTTCACC
GCCTCCTGCTTACCACAGGCCGGGTCTGCTCTCTCTCGGAACCCTACTGG
TGTGAGCAACTTGGTCGGGCCCGCGCCCGGCGACAAGTGAATGACGCGAC
TCTCCGCCGACTTCTGCGTCTCTGCCTCTTGACCGATGCTCAATTGCTTC
GTCAGGCGTCCCAGTGTCCTCCCTCCCACACCTCTTCATCGTCGTCCTCC
TCCTCGTCGCAATCCCTCCCCCATATCATTTCCCTGAATATGAAGGGCAT
GGGACACCATCTTCTCGACCTTGCCTTGGAAGAGTTTCCGAGCTTTTCCC
TCTCTTCTACCTCCAAGCATCTGTACCTATACCGTGACGTTGTCTCCGTC
GTCGAGTCTCTGGCCAGCGTCTTCCACACCGCCTCCCCTCCCTTCATTCG
TGCCTGCCTCTGGGTCTGCCCACGCTGGACTCTCGATCTCGTCATTCCCT
ACCGGAGCCAAAGGCTGCAGACCTGGATAAAGAATGAGGATTTGGAGCTC
AGTCCCTTGGGGAGGGTGGGTCGGTGGGGTGTGGCGCGTGAATTGGCTCT
GGCCTGGTTGGACTCGGTGTGTACATGGCTGGAAGTGATGGAGGGGAAGG
AAGGGGGGGAGGGAGGGAAGGCGGAAGGAGCTGTGGAGCGTGTGGTGCTC
AAGATGGAGGACTTTGTTGACAGTAGTAAGAGAAATAAAGTAGTAGAGCA
TGTGTTGGTCTTTGTTTTTGGGAAGGGAGTGGGGGAGGCGGTAATGAAGG
GGGAGATCAACATGGAGAAGTGCCTAGCGGTATTCGATCGCCACTCCCAG
CAGGGGTCGCGCATGCAGCAGTCATCCAATGTGACGGGCAAACACTTCTT
GACAGAGGCAGGACAGATTCACTTGCGGGCGTTATTGTCGAGTGTGCCGG
ATTGGCGCGTGCGCACGATGCGATTGCCGTTCAAATTATTGGACGACGAG
CAGCGGAGAGGGAAGAAAAAGGGTGAAGAGTTTGAGATAGGGGAGGGAAA
AGATGAGAAAGGGAAGGGGGAGAAGGGAAAGAAGGAGAAATAG
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protein sequence of jgi.p|Nanoce1779_2|642305

>mRNA_9626-protein ID=mRNA_9626-protein|Name=jgi.p|Nanoce1779_2|642305|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MGAVLFHQWYPSQSLKPSPPASGGAALYPLAWVYRNGDEWWGGLKAIQRN
TSRTAHYKPLREFLEGTFDEAEAAVGEMKEENGVAEFSSIPPSSFIIYCL
DFETQSVVFMEMEPGANLLEEPFMDRGVRHLAGKHVLVASFDTVEDYLRQ
KEAEKQQQQLGGDNKEHFLWVWNTGRCGSTLLHRLLLTTGRVCSLSEPYW
CEQLGRARARRQVNDATLRRLLRLCLLTDAQLLRQASQCPPSHTSSSSSS
SSSQSLPHIISLNMKGMGHHLLDLALEEFPSFSLSSTSKHLYLYRDVVSV
VESLASVFHTASPPFIRACLWVCPRWTLDLVIPYRSQRLQTWIKNEDLEL
SPLGRVGRWGVARELALAWLDSVCTWLEVMEGKEGGEGGKAEGAVERVVL
KMEDFVDSSKRNKVVEHVLVFVFGKGVGEAVMKGEINMEKCLAVFDRHSQ
QGSRMQQSSNVTGKHFLTEAGQIHLRALLSSVPDWRVRTMRLPFKLLDDE
QRRGKKKGEEFEIGEGKDEKGKGEKGKKEK*
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mRNA from alignment at scaffold_31:118890..120482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9626 ID=mRNA_9626|Name=jgi.p|Nanoce1779_2|642305|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp|location=Sequence derived from alignment at scaffold_31:118890..120482- (Nannochloropsis oceanica)
ATGGGCGCCGTCCTCTTCCACCAGTGGTACCCAAGCCAATCCCTCAAGCC
TAGTCCCCCAGCCAGCGGCGGCGCGGCGCTTTACCCCTTGGCATGGGTCT
ACCGGAATGGAGACGAGTGGTGGGGTGGACTCAAGGCTATCCAGCGGAAT
ACCTCCCGCACTGCCCACTACAAGCCCTTGCGCGAGTTTTTGGAAGGTAC
TTTCGACGAAGCGGAGGCGGCGGTGGGAGAGATGAAGGAGGAGAATGGTG
TGGCAGAGTTCTCCTCGATTCCACCCTCTTCCTTTATTATTTACTGCCTG
GATTTCGAGACGCAAAGTGTGGTGTTCATGGAGATGGAGCCAGGGGCGAA
TTTGTTGGAGGAACCCTTTATGGATCGAGGTGTACGGCACCTGGCGGGGA
AGCACGTGCTGGTGGCATCATTTGATACCGTGGAGGACTACCTGCGGCAG
AAAGAAGCTGAAAAGCAGCAGCAACAGCTTGGAGGAGACAATAAAGAACA
CTTTTTGTGGGTTTGGAATACCGGGAGGTGCGGCTCTACCCTTCTTCACC
GCCTCCTGCTTACCACAGGCCGGGTCTGCTCTCTCTCGGAACCCTACTGG
TGTGAGCAACTTGGTCGGGCCCGCGCCCGGCGACAAGTGAATGACGCGAC
TCTCCGCCGACTTCTGCGTCTCTGCCTCTTGACCGATGCTCAATTGCTTC
GTCAGGCGTCCCAGTGTCCTCCCTCCCACACCTCTTCATCGTCGTCCTCC
TCCTCGTCGCAATCCCTCCCCCATATCATTTCCCTGAATATGAAGGGCAT
GGGACACCATCTTCTCGACCTTGCCTTGGAAGAGTTTCCGAGCTTTTCCC
TCTCTTCTACCTCCAAGCATCTGTACCTATACCGTGACGTTGTCTCCGTC
GTCGAGTCTCTGGCCAGCGTCTTCCACACCGCCTCCCCTCCCTTCATTCG
TGCCTGCCTCTGGGTCTGCCCACGCTGGACTCTCGATCTCGTCATTCCCT
ACCGGAGCCAAAGGCTGCAGACCTGGATAAAGAATGAGGATTTGGAGCTC
AGTCCCTTGGGGAGGGTGGGTCGGTGGGGTGTGGCGCGTGAATTGGCTCT
GGCCTGGTTGGACTCGGTGTGTACATGGCTGGAAGTGATGGAGGGGAAGG
AAGGGGGGGAGGGAGGGAAGGCGGAAGGAGCTGTGGAGCGTGTGGTGCTC
AAGATGGAGGACTTTGTTGACAGTAGTAAGAGAAATAAAGTAGTAGAGCA
TGTGTTGGTCTTTGTTTTTGGGAAGGGAGTGGGGGAGGCGGTAATGAAGG
GGGAGATCAACATGGAGAAGTGCCTAGCGGTATTCGATCGCCACTCCCAG
CAGGGGTCGCGCATGCAGCAGTCATCCAATGTGACGGGCAAACACTTCTT
GACAGAGGCAGGACAGATTCACTTGCGGGCGTTATTGTCGAGTGTGCCGG
ATTGGCGCGTGCGCACGATGCGATTGCCGTTCAAATTATTGGACGACGAG
CAGCGGAGAGGGAAGAAAAAGGGTGAAGAGTTTGAGATAGGGGAGGGAAA
AGATGAGAAAGGGAAGGGGGAGAAGGGAAAGAAGGAGAAATAG
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Coding sequence (CDS) from alignment at scaffold_31:118890..120482-

>mRNA_9626 ID=mRNA_9626|Name=jgi.p|Nanoce1779_2|642305|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_31:118890..120482- (Nannochloropsis oceanica)
ATGGGCGCCGTCCTCTTCCACCAGTGGTACCCAAGCCAATCCCTCAAGCC
TAGTCCCCCAGCCAGCGGCGGCGCGGCGCTTTACCCCTTGGCATGGGTCT
ACCGGAATGGAGACGAGTGGTGGGGTGGACTCAAGGCTATCCAGCGGAAT
ACCTCCCGCACTGCCCACTACAAGCCCTTGCGCGAGTTTTTGGAAGGTAC
TTTCGACGAAGCGGAGGCGGCGGTGGGAGAGATGAAGGAGGAGAATGGTG
TGGCAGAGTTCTCCTCGATTCCACCCTCTTCCTTTATTATTTACTGCCTG
GATTTCGAGACGCAAAGTGTGGTGTTCATGGAGATGGAGCCAGGGGCGAA
TTTGTTGGAGGAACCCTTTATGGATCGAGGTGTACGGCACCTGGCGGGGA
AGCACGTGCTGGTGGCATCATTTGATACCGTGGAGGACTACCTGCGGCAG
AAAGAAGCTGAAAAGCAGCAGCAACAGCTTGGAGGAGACAATAAAGAACA
CTTTTTGTGGGTTTGGAATACCGGGAGGTGCGGCTCTACCCTTCTTCACC
GCCTCCTGCTTACCACAGGCCGGGTCTGCTCTCTCTCGGAACCCTACTGG
TGTGAGCAACTTGGTCGGGCCCGCGCCCGGCGACAAGTGAATGACGCGAC
TCTCCGCCGACTTCTGCGTCTCTGCCTCTTGACCGATGCTCAATTGCTTC
GTCAGGCGTCCCAGTGTCCTCCCTCCCACACCTCTTCATCGTCGTCCTCC
TCCTCGTCGCAATCCCTCCCCCATATCATTTCCCTGAATATGAAGGGCAT
GGGACACCATCTTCTCGACCTTGCCTTGGAAGAGTTTCCGAGCTTTTCCC
TCTCTTCTACCTCCAAGCATCTGTACCTATACCGTGACGTTGTCTCCGTC
GTCGAGTCTCTGGCCAGCGTCTTCCACACCGCCTCCCCTCCCTTCATTCG
TGCCTGCCTCTGGGTCTGCCCACGCTGGACTCTCGATCTCGTCATTCCCT
ACCGGAGCCAAAGGCTGCAGACCTGGATAAAGAATGAGGATTTGGAGCTC
AGTCCCTTGGGGAGGGTGGGTCGGTGGGGTGTGGCGCGTGAATTGGCTCT
GGCCTGGTTGGACTCGGTGTGTACATGGCTGGAAGTGATGGAGGGGAAGG
AAGGGGGGGAGGGAGGGAAGGCGGAAGGAGCTGTGGAGCGTGTGGTGCTC
AAGATGGAGGACTTTGTTGACAGTAGTAAGAGAAATAAAGTAGTAGAGCA
TGTGTTGGTCTTTGTTTTTGGGAAGGGAGTGGGGGAGGCGGTAATGAAGG
GGGAGATCAACATGGAGAAGTGCCTAGCGGTATTCGATCGCCACTCCCAG
CAGGGGTCGCGCATGCAGCAGTCATCCAATGTGACGGGCAAACACTTCTT
GACAGAGGCAGGACAGATTCACTTGCGGGCGTTATTGTCGAGTGTGCCGG
ATTGGCGCGTGCGCACGATGCGATTGCCGTTCAAATTATTGGACGACGAG
CAGCGGAGAGGGAAGAAAAAGGGTGAAGAGTTTGAGATAGGGGAGGGAAA
AGATGAGAAAGGGAAGGGGGAGAAGGGAAAGAAGGAGAAATAG
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Synonyms
Publications