jgi.p|Nanoce1779_2|533176, mRNA_9622 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533176
Unique NamemRNA_9622
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length648
Alignment locationscaffold_31:104432..105079 -

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Properties
Property NameValue
TranscriptId533262
TrackFilteredModels2
ProteinId533176
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:104432..105079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533176gene_9622Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9622CDS_9622Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533176mRNA_9622-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9622 ID=mRNA_9622|Name=jgi.p|Nanoce1779_2|533176|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
ATGGCTGCCCCTAGCAACACCAGCAGCAGTAGCACCGCAGTCATCGGCGG
CATGTCGCCCTTATTGAGGAGGGTTTTCTTCTTGTACTTTGCCACGCACA
TCCCCATCACCCTTCTTATCGATGCGCAAGGAGTATCCTCCGCCTTCCAC
CCCCAAGCCTGCAAGGACCTGCTCGCCTGGTACACCAAGGAGTTCGGAGA
CTTCCTCATGGATAGCCCTCCCCAGTGGTTTCGGTCCATCGTGGCTTGCG
AACTGCTCTTCCAACTGCCCTTCTTCTTTGTCGCGGTCAACGGCTTCTGG
CACGGCAAGAACTCCATGCGTCTCCCGTGCTTGGTGTACGGTGCCCACGT
CGCCACCACCCTCGTTCCCATCTTGGACGCCTTTGCCCACGCTTCGCACC
TCACGCCGGAGCAAAAAGCCATATTGATTGGCATCTATTTCCCCTACTTG
CTCGTCCCGCTGCTATTGGTGTGGGTCATGTGGATGCACGAGAGGCCATT
TGGAATCGAGGGTGAGGTGCCAATGGGGCACCCAAAGGGCGGGGATGCCT
CCAAGTGCCCTTTTGCCAGCATGATAGGATTTGCGGCGGCGGAAGGCGTG
TCGGTGGCGCCGTTGGAAGGGGGGAAGGGGGGAAAGAAGGAGAGATAA
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protein sequence of jgi.p|Nanoce1779_2|533176

>mRNA_9622-protein ID=mRNA_9622-protein|Name=jgi.p|Nanoce1779_2|533176|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MAAPSNTSSSSTAVIGGMSPLLRRVFFLYFATHIPITLLIDAQGVSSAFH
PQACKDLLAWYTKEFGDFLMDSPPQWFRSIVACELLFQLPFFFVAVNGFW
HGKNSMRLPCLVYGAHVATTLVPILDAFAHASHLTPEQKAILIGIYFPYL
LVPLLLVWVMWMHERPFGIEGEVPMGHPKGGDASKCPFASMIGFAAAEGV
SVAPLEGGKGGKKER*
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mRNA from alignment at scaffold_31:104432..105079-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9622 ID=mRNA_9622|Name=jgi.p|Nanoce1779_2|533176|organism=Nannochloropsis oceanica|type=mRNA|length=648bp|location=Sequence derived from alignment at scaffold_31:104432..105079- (Nannochloropsis oceanica)
ATGGCTGCCCCTAGCAACACCAGCAGCAGTAGCACCGCAGTCATCGGCGG
CATGTCGCCCTTATTGAGGAGGGTTTTCTTCTTGTACTTTGCCACGCACA
TCCCCATCACCCTTCTTATCGATGCGCAAGGAGTATCCTCCGCCTTCCAC
CCCCAAGCCTGCAAGGACCTGCTCGCCTGGTACACCAAGGAGTTCGGAGA
CTTCCTCATGGATAGCCCTCCCCAGTGGTTTCGGTCCATCGTGGCTTGCG
AACTGCTCTTCCAACTGCCCTTCTTCTTTGTCGCGGTCAACGGCTTCTGG
CACGGCAAGAACTCCATGCGTCTCCCGTGCTTGGTGTACGGTGCCCACGT
CGCCACCACCCTCGTTCCCATCTTGGACGCCTTTGCCCACGCTTCGCACC
TCACGCCGGAGCAAAAAGCCATATTGATTGGCATCTATTTCCCCTACTTG
CTCGTCCCGCTGCTATTGGTGTGGGTCATGTGGATGCACGAGAGGCCATT
TGGAATCGAGGGTGAGGTGCCAATGGGGCACCCAAAGGGCGGGGATGCCT
CCAAGTGCCCTTTTGCCAGCATGATAGGATTTGCGGCGGCGGAAGGCGTG
TCGGTGGCGCCGTTGGAAGGGGGGAAGGGGGGAAAGAAGGAGAGATAA
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Coding sequence (CDS) from alignment at scaffold_31:104432..105079-

>mRNA_9622 ID=mRNA_9622|Name=jgi.p|Nanoce1779_2|533176|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_31:104432..105079- (Nannochloropsis oceanica)
ATGGCTGCCCCTAGCAACACCAGCAGCAGTAGCACCGCAGTCATCGGCGG
CATGTCGCCCTTATTGAGGAGGGTTTTCTTCTTGTACTTTGCCACGCACA
TCCCCATCACCCTTCTTATCGATGCGCAAGGAGTATCCTCCGCCTTCCAC
CCCCAAGCCTGCAAGGACCTGCTCGCCTGGTACACCAAGGAGTTCGGAGA
CTTCCTCATGGATAGCCCTCCCCAGTGGTTTCGGTCCATCGTGGCTTGCG
AACTGCTCTTCCAACTGCCCTTCTTCTTTGTCGCGGTCAACGGCTTCTGG
CACGGCAAGAACTCCATGCGTCTCCCGTGCTTGGTGTACGGTGCCCACGT
CGCCACCACCCTCGTTCCCATCTTGGACGCCTTTGCCCACGCTTCGCACC
TCACGCCGGAGCAAAAAGCCATATTGATTGGCATCTATTTCCCCTACTTG
CTCGTCCCGCTGCTATTGGTGTGGGTCATGTGGATGCACGAGAGGCCATT
TGGAATCGAGGGTGAGGTGCCAATGGGGCACCCAAAGGGCGGGGATGCCT
CCAAGTGCCCTTTTGCCAGCATGATAGGATTTGCGGCGGCGGAAGGCGTG
TCGGTGGCGCCGTTGGAAGGGGGGAAGGGGGGAAAGAAGGAGAGATAA
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Synonyms
Publications