|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 605281 |
| Track | FilteredModels2 |
| ProteinId | 605195 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_31 | supercontig | scaffold_31:93973..95881 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9620 ID=mRNA_9620|Name=jgi.p|Nanoce1779_2|605195|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
AGTACACGCACAAAAACACAGGTCTCTCTAACACACGCGGGGGTTAGAAA
GCGCCATGCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGA
ACAACTTCCTCTCTTTTGCTGGCACTTTTCCTTGTCCACCTGCTACTGCT
GTTCTCCGATAGAATAGAAGCATTTGCCATTCCAGACCCCATCCGCAGCC
GTAGAAGAAGCGTGACGAGGACAAGGATAACCATGACCCAAGCTCCTCGG
CTAAAAGACTGCGAGCAGCTCACGACACGCGCGCACACCCTCTTCCAAAA
TGCCGCCGCGGTGACAGGGGGAGTTCTTTTTGGAAGTGCCATCTCGAGCA
GAGGCGGGATCACGAAGGCTCAGGCTGCCTTGGACCCCATCGTTAGCCAA
ACGTACATGGAGCAAGTCCGCGACGCCATCCCCGTCAAAACCATCCGCGG
CGTGTGGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGCTCTGCA
AAGGACGGCTGAAGATGCGAGGCTTTGTGGAGGAGCCGAATAAAGGAACA
CTGGAGTACATGGGCTGCAACGACAGCAAGGGAAAAGGGAATTGGTTGCT
CAAGCCCGCGCGAATCGCCAACGGGCAAATACGTTTCTCGGCAAGATGGA
AGGTCCGCTTCTCAGACGGGGAGTCGCTCATTTACCGGGGCGACGTGCTG
GCCGGCGGGAACTACGCCAAAGCCACGGCCTCGATCGTGGATGGAGACAT
CTTGCAGCCCTTCACGGGCATTACCGGCAATTTGTCCGAGAGGAAGATCG
GCAGCTTTGAGGCCGACCTGATCGAGGTCAGCGACGACCAAGAAAAGCTG
TAGAGTAAGGTAGAGAATGAAGACAGCACACACAACGCGATAACATCCCG
AGCAACTAAAGATAAGGAAACGATTGGATCTGA back to topprotein sequence of jgi.p|Nanoce1779_2|605195 >mRNA_9620-protein ID=mRNA_9620-protein|Name=jgi.p|Nanoce1779_2|605195|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MPVRRGTPARESTRRTTSSLLLALFLVHLLLLFSDRIEAFAIPDPIRSRR
RSVTRTRITMTQAPRLKDCEQLTTRAHTLFQNAAAVTGGVLFGSAISSRG
GITKAQAALDPIVSQTYMEQVRDAIPVKTIRGVWRIREYRDKSTGTLCKG
RLKMRGFVEEPNKGTLEYMGCNDSKGKGNWLLKPARIANGQIRFSARWKV
RFSDGESLIYRGDVLAGGNYAKATASIVDGDILQPFTGITGNLSERKIGS
FEADLIEVSDDQEKL* back to topmRNA from alignment at scaffold_31:93973..95881- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9620 ID=mRNA_9620|Name=jgi.p|Nanoce1779_2|605195|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp|location=Sequence derived from alignment at scaffold_31:93973..95881- (Nannochloropsis oceanica)
AGTACACGCACAAAAACACAGGTCTCTCTAACACACGCGGGGGTTAGAAA
GCGCCATGCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGA
AGTATGTTTGATAGGAAGGAGGCAGGTCGTGGTGGAATCGTGTGCAGGTA
TCGACCCCCTCCCTCCATCCCCTCCCTCCACCCTCACAGCAACTTCCTCT
CTTTTGCTGGCACTTTTCCTTGTCCACCTGCTACTGCTGTTCTCCGATAG
AATAGAAGCATTTGCCATTCCAGACCCCATCCGCAGCCGTAGAAGAAGCG
TGACGAGGACAAGGATAACCATGACCCAAGCTCCTCGGCTAAAAGACTGC
GAGCAGCTCACGACACGCGCGCACACCCTCTTCCAAAATGCCGCCGCGGT
GACAGGGGGAGTTCTTTTTGGAAGTGCCATCTCGAGCAGAGGCGGGATCA
CGAAGGCTCAGGCTGCCTTGGACCCCATCGTTAGCCAAACGTACATGGAG
CAAGTCCGCGACGGTACGTTACTCCTACTACTTCTCGCCTCTGGCATTCC
CTCCCTCCTTCCCTCCTCGTGTTTCTATCTCCAAATCAAGTTTATATCTC
TCATGCACTGAAACTTTTGACCGTTACATCTCCGTTCGTCTCACCCCGTC
CTTCCTCCCTTCCTCCCTCCCTCCCTCCATGTCTCCTCCCAGCCATCCCC
GTCAAAACCATCCGCGGCGTGTGGCGCATCCGGGAATACCGCGATAAGAG
CACTGGAACGCTCTGCAAAGGACGGCTGAAGATGCGAGGTAGGGAGGAAG
GCTGAACGAGGAAGGAAGGGTCGAAGGGAGGAGACTTGAGGGATGGAGGT
AGGAGGGAGAAGGCTGGAGGGACGAGGACAGGCTTGTCGGCATTGTTTCA
GGGTTTACAGGCTTAAGAGGCTGATTTTGACTTCTAGGCTTAATATATAT
AACGTAATGTGCACGTAATTTATGTCTCTACGCAGGCTTTGTGGAGGAGC
CGAATAAAGGAACACTGGAGTACATGGGCTGCAACGACAGCAAGGGAAAA
GGTGAGGGTAAAGGGTATAGGGAGGGAGGGAGGGGAGGAAGAGAGGAAGT
AAAGGAGGGGAATTGATAGTCGGGTGCATGCTGCTGGTTCTCAAGCTCTC
GGCTTGTACCTTCATCTTCCTCCTCCTCCCAAGGGAATTGGTTGCTCAAG
CCCGCGCGAATCGCCAACGGGCAAATACGTTTCTCGGCAAGGTACGTTGA
GAAATCAAGATCAAGTCTTTCGTCCCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTTCATCTCCCCTCGCACCGACTCTTCTCTTTGCACGGCGC
TGAATCCTCTCTCTCCATACGTTCTTCCTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCAGATGGAAGGTCCGCTTCTCAGACGG
GGAGTCGCTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAACTACGCCA
AAGCCACGGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTTCACGGGC
ATTACCGGTAGGGTTCGAGGGAGGGAGGGAGGGAGGGAAGAGACGATGGA
GTAGAAAGCATTTTTTTCGTGGATGAACCCGACCAGTCAATGGCTGCCTC
TTTGCGAATGTGCCTCGTTCAACTCTCCACCCCCTACTCCCCCCCCCCCC
CCCTCTGCCCTTCCCTTCCCCCTTCCCTCCGGCCGGGCACCCCCACTTGC
AGGCAATTTGTCCGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATCG
AGGTCAGCGACGACCAAGAAAAGCTGTAGAGTAAGGTAGAGAATGAAGAC
AGCACACACAACGCGATAACATCCCGAGCAACTAAAGATAAGGAAACGAT
TGGATCTGA back to topCoding sequence (CDS) from alignment at scaffold_31:93973..95881- >mRNA_9620 ID=mRNA_9620|Name=jgi.p|Nanoce1779_2|605195|organism=Nannochloropsis oceanica|type=CDS|length=5586bp|location=Sequence derived from alignment at scaffold_31:93973..95881- (Nannochloropsis oceanica)
GCAATTTGTCCGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATCGAG
GTCAGCGACGACCAAGAAAAGCTGTAGATGGAAGGTCCGCTTCTCAGACG
GGGAGTCGCTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAACTACGCC
AAAGCCACGGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTTCACGGG
CATTACCGGGAATTGGTTGCTCAAGCCCGCGCGAATCGCCAACGGGCAAA
TACGTTTCTCGGCAAGGCTTTGTGGAGGAGCCGAATAAAGGAACACTGGA
GTACATGGGCTGCAACGACAGCAAGGGAAAAGCCATCCCCGTCAAAACCA
TCCGCGGCGTGTGGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACG
CTCTGCAAAGGACGGCTGAAGATGCGAGCAACTTCCTCTCTTTTGCTGGC
ACTTTTCCTTGTCCACCTGCTACTGCTGTTCTCCGATAGAATAGAAGCAT
TTGCCATTCCAGACCCCATCCGCAGCCGTAGAAGAAGCGTGACGAGGACA
AGGATAACCATGACCCAAGCTCCTCGGCTAAAAGACTGCGAGCAGCTCAC
GACACGCGCGCACACCCTCTTCCAAAATGCCGCCGCGGTGACAGGGGGAG
TTCTTTTTGGAAGTGCCATCTCGAGCAGAGGCGGGATCACGAAGGCTCAG
GCTGCCTTGGACCCCATCGTTAGCCAAACGTACATGGAGCAAGTCCGCGA
CGATGCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGAAGC
AATTTGTCCGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATCGAGGT
CAGCGACGACCAAGAAAAGCTGTAGATGGAAGGTCCGCTTCTCAGACGGG
GAGTCGCTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAACTACGCCAA
AGCCACGGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTTCACGGGCA
TTACCGGGAATTGGTTGCTCAAGCCCGCGCGAATCGCCAACGGGCAAATA
CGTTTCTCGGCAAGGCTTTGTGGAGGAGCCGAATAAAGGAACACTGGAGT
ACATGGGCTGCAACGACAGCAAGGGAAAAGCCATCCCCGTCAAAACCATC
CGCGGCGTGTGGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGCT
CTGCAAAGGACGGCTGAAGATGCGAGCAACTTCCTCTCTTTTGCTGGCAC
TTTTCCTTGTCCACCTGCTACTGCTGTTCTCCGATAGAATAGAAGCATTT
GCCATTCCAGACCCCATCCGCAGCCGTAGAAGAAGCGTGACGAGGACAAG
GATAACCATGACCCAAGCTCCTCGGCTAAAAGACTGCGAGCAGCTCACGA
CACGCGCGCACACCCTCTTCCAAAATGCCGCCGCGGTGACAGGGGGAGTT
CTTTTTGGAAGTGCCATCTCGAGCAGAGGCGGGATCACGAAGGCTCAGGC
TGCCTTGGACCCCATCGTTAGCCAAACGTACATGGAGCAAGTCCGCGACG
ATGCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGAAGCAA
TTTGTCCGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATCGAGGTCA
GCGACGACCAAGAAAAGCTGTAGATGGAAGGTCCGCTTCTCAGACGGGGA
GTCGCTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAACTACGCCAAAG
CCACGGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTTCACGGGCATT
ACCGGGAATTGGTTGCTCAAGCCCGCGCGAATCGCCAACGGGCAAATACG
TTTCTCGGCAAGGCTTTGTGGAGGAGCCGAATAAAGGAACACTGGAGTAC
ATGGGCTGCAACGACAGCAAGGGAAAAGCCATCCCCGTCAAAACCATCCG
CGGCGTGTGGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGCTCT
GCAAAGGACGGCTGAAGATGCGAGCAACTTCCTCTCTTTTGCTGGCACTT
TTCCTTGTCCACCTGCTACTGCTGTTCTCCGATAGAATAGAAGCATTTGC
CATTCCAGACCCCATCCGCAGCCGTAGAAGAAGCGTGACGAGGACAAGGA
TAACCATGACCCAAGCTCCTCGGCTAAAAGACTGCGAGCAGCTCACGACA
CGCGCGCACACCCTCTTCCAAAATGCCGCCGCGGTGACAGGGGGAGTTCT
TTTTGGAAGTGCCATCTCGAGCAGAGGCGGGATCACGAAGGCTCAGGCTG
CCTTGGACCCCATCGTTAGCCAAACGTACATGGAGCAAGTCCGCGACGAT
GCCTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGAAGCAATT
TGTCCGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATCGAGGTCAGC
GACGACCAAGAAAAGCTGTAGATGGAAGGTCCGCTTCTCAGACGGGGAGT
CGCTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAACTACGCCAAAGCC
ACGGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTTCACGGGCATTAC
CGGGAATTGGTTGCTCAAGCCCGCGCGAATCGCCAACGGGCAAATACGTT
TCTCGGCAAGGCTTTGTGGAGGAGCCGAATAAAGGAACACTGGAGTACAT
GGGCTGCAACGACAGCAAGGGAAAAGCCATCCCCGTCAAAACCATCCGCG
GCGTGTGGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGCTCTGC
AAAGGACGGCTGAAGATGCGAGCAACTTCCTCTCTTTTGCTGGCACTTTT
CCTTGTCCACCTGCTACTGCTGTTCTCCGATAGAATAGAAGCATTTGCCA
TTCCAGACCCCATCCGCAGCCGTAGAAGAAGCGTGACGAGGACAAGGATA
ACCATGACCCAAGCTCCTCGGCTAAAAGACTGCGAGCAGCTCACGACACG
CGCGCACACCCTCTTCCAAAATGCCGCCGCGGTGACAGGGGGAGTTCTTT
TTGGAAGTGCCATCTCGAGCAGAGGCGGGATCACGAAGGCTCAGGCTGCC
TTGGACCCCATCGTTAGCCAAACGTACATGGAGCAAGTCCGCGACGATGC
CTGTTCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGAAGCAATTTG
TCCGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATCGAGGTCAGCGA
CGACCAAGAAAAGCTGTAGATGGAAGGTCCGCTTCTCAGACGGGGAGTCG
CTCATTTACCGGGGCGACGTGCTGGCCGGCGGGAACTACGCCAAAGCCAC
GGCCTCGATCGTGGATGGAGACATCTTGCAGCCCTTCACGGGCATTACCG
GGAATTGGTTGCTCAAGCCCGCGCGAATCGCCAACGGGCAAATACGTTTC
TCGGCAAGGCTTTGTGGAGGAGCCGAATAAAGGAACACTGGAGTACATGG
GCTGCAACGACAGCAAGGGAAAAGCCATCCCCGTCAAAACCATCCGCGGC
GTGTGGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGCTCTGCAA
AGGACGGCTGAAGATGCGAGCAACTTCCTCTCTTTTGCTGGCACTTTTCC
TTGTCCACCTGCTACTGCTGTTCTCCGATAGAATAGAAGCATTTGCCATT
CCAGACCCCATCCGCAGCCGTAGAAGAAGCGTGACGAGGACAAGGATAAC
CATGACCCAAGCTCCTCGGCTAAAAGACTGCGAGCAGCTCACGACACGCG
CGCACACCCTCTTCCAAAATGCCGCCGCGGTGACAGGGGGAGTTCTTTTT
GGAAGTGCCATCTCGAGCAGAGGCGGGATCACGAAGGCTCAGGCTGCCTT
GGACCCCATCGTTAGCCAAACGTACATGGAGCAAGTCCGCGACGATGCCT
GTTCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGAAGCAATTTGTC
CGAGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATCGAGGTCAGCGACG
ACCAAGAAAAGCTGTAGATGGAAGGTCCGCTTCTCAGACGGGGAGTCGCT
CATTTACCGGGGCGACGTGCTGGCCGGCGGGAACTACGCCAAAGCCACGG
CCTCGATCGTGGATGGAGACATCTTGCAGCCCTTCACGGGCATTACCGGG
AATTGGTTGCTCAAGCCCGCGCGAATCGCCAACGGGCAAATACGTTTCTC
GGCAAGGCTTTGTGGAGGAGCCGAATAAAGGAACACTGGAGTACATGGGC
TGCAACGACAGCAAGGGAAAAGCCATCCCCGTCAAAACCATCCGCGGCGT
GTGGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGCTCTGCAAAG
GACGGCTGAAGATGCGAGCAACTTCCTCTCTTTTGCTGGCACTTTTCCTT
GTCCACCTGCTACTGCTGTTCTCCGATAGAATAGAAGCATTTGCCATTCC
AGACCCCATCCGCAGCCGTAGAAGAAGCGTGACGAGGACAAGGATAACCA
TGACCCAAGCTCCTCGGCTAAAAGACTGCGAGCAGCTCACGACACGCGCG
CACACCCTCTTCCAAAATGCCGCCGCGGTGACAGGGGGAGTTCTTTTTGG
AAGTGCCATCTCGAGCAGAGGCGGGATCACGAAGGCTCAGGCTGCCTTGG
ACCCCATCGTTAGCCAAACGTACATGGAGCAAGTCCGCGACGATGCCTGT
TCGTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGAAGCAATTTGTCCG
AGAGGAAGATCGGCAGCTTTGAGGCCGACCTGATCGAGGTCAGCGACGAC
CAAGAAAAGCTGTAGATGGAAGGTCCGCTTCTCAGACGGGGAGTCGCTCA
TTTACCGGGGCGACGTGCTGGCCGGCGGGAACTACGCCAAAGCCACGGCC
TCGATCGTGGATGGAGACATCTTGCAGCCCTTCACGGGCATTACCGGGAA
TTGGTTGCTCAAGCCCGCGCGAATCGCCAACGGGCAAATACGTTTCTCGG
CAAGGCTTTGTGGAGGAGCCGAATAAAGGAACACTGGAGTACATGGGCTG
CAACGACAGCAAGGGAAAAGCCATCCCCGTCAAAACCATCCGCGGCGTGT
GGCGCATCCGGGAATACCGCGATAAGAGCACTGGAACGCTCTGCAAAGGA
CGGCTGAAGATGCGAGCAACTTCCTCTCTTTTGCTGGCACTTTTCCTTGT
CCACCTGCTACTGCTGTTCTCCGATAGAATAGAAGCATTTGCCATTCCAG
ACCCCATCCGCAGCCGTAGAAGAAGCGTGACGAGGACAAGGATAACCATG
ACCCAAGCTCCTCGGCTAAAAGACTGCGAGCAGCTCACGACACGCGCGCA
CACCCTCTTCCAAAATGCCGCCGCGGTGACAGGGGGAGTTCTTTTTGGAA
GTGCCATCTCGAGCAGAGGCGGGATCACGAAGGCTCAGGCTGCCTTGGAC
CCCATCGTTAGCCAAACGTACATGGAGCAAGTCCGCGACGATGCCTGTTC
GTAGAGGCACCCCCGCAAGGGAGTCGACAAGAAGAA back to top
|