jgi.p|Nanoce1779_2|147521, mRNA_962 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|147521
Unique NamemRNA_962
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length798
Alignment locationscaffold_2:863870..864667 +

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Properties
Property NameValue
TranscriptId147607
TrackFilteredModels2
ProteinId147521
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:863870..864667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|147521gene_962Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|147521mRNA_962-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_962CDS_962Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_962 ID=mRNA_962|Name=jgi.p|Nanoce1779_2|147521|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
AAGAAGGACTGTGGGACTGTGGGTGTATGAATGCATGGAGGAAGGAAGGG
AGGGAAATGCCGCTTGCCGTCAAGGTGTAAGAGCGTCGTCAAGGCAGGCG
GGGCGGGGAGGGAAACGAGTTGCTTTTATGTGCAAACAAATATTTAAAGC
TTGTTCACGACAAAAAGAAGAAGGAAAGCGAAGATGATGAAAAAGACGAC
GAGGAGAAGAAAGAAAGAGGAAGAGAACAACGAAGAAAAGGAGAAGGAGA
AGAGAAGACGACAAAGAAGAGGGAGGTCAAGAGCGATTAGAAGAGGAAAA
TCAATTCCATCACGAAAGTCTCATAATATAAATCAAGAAGGCTGTGGGCT
TGTTTTCTTTTTATATTATGTTTTTGGTTTTGGTCTGTTGTCATCACGTG
GGAGGTCAAGAGCGATTAGAAGAGGAAAATCAATTCCATCACGAAAGTCT
CATAATATAAATCAAGAAGGCTGTGGGCTTGTTTTCTTTTTATATTATGT
TTTTGGTTTTGGTCTGTTGTCATCACGTGGGACCTCTCTTCACTCTACTC
CTCGTCTTCACCTTGCTATTCGCCGACCCATTTCTCCCTCTTGTCGCCAT
TTTTGTTGTCCCCCTCGGCCAGTAAATTTTGATTGCTGAAGAATAAACGA
ATGCATCGCTTCTGTTTTTGGAAAATCTATCAAATAATTATATGTGGTCA
TCGCGACCATTTCACACTCTCCTCCTCGATCCCTGGAGGGTGTATCCACC
CACAAAAACCCACACAAAGAAAGGCATTGCCGTCTCTCCTTTCATGAA
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protein sequence of jgi.p|Nanoce1779_2|147521

>mRNA_962-protein ID=mRNA_962-protein|Name=jgi.p|Nanoce1779_2|147521|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MMKKTTRRRKKEEENNEEKEKEKRRRQRRGRSRAIRRGKSIPSRKSHNIN
QEGCGLVFFLYYVFGFGLLSSRGRSRAIRRGKSIPSRKSHNINQEGCGLV
FFLYYVFGFGLLSSRGTSLHSTPRLHLAIRRPISPSCRHFCCPPRPVNFD
C*
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mRNA from alignment at scaffold_2:863870..864667+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_962 ID=mRNA_962|Name=jgi.p|Nanoce1779_2|147521|organism=Nannochloropsis oceanica|type=mRNA|length=798bp|location=Sequence derived from alignment at scaffold_2:863870..864667+ (Nannochloropsis oceanica)
AAGAAGGACTGTGGGACTGTGGGTGTATGAATGCATGGAGGAAGGAAGGG
AGGGAAATGCCGCTTGCCGTCAAGGTGTAAGAGCGTCGTCAAGGCAGGCG
GGGCGGGGAGGGAAACGAGTTGCTTTTATGTGCAAACAAATATTTAAAGC
TTGTTCACGACAAAAAGAAGAAGGAAAGCGAAGATGATGAAAAAGACGAC
GAGGAGAAGAAAGAAAGAGGAAGAGAACAACGAAGAAAAGGAGAAGGAGA
AGAGAAGACGACAAAGAAGAGGGAGGTCAAGAGCGATTAGAAGAGGAAAA
TCAATTCCATCACGAAAGTCTCATAATATAAATCAAGAAGGCTGTGGGCT
TGTTTTCTTTTTATATTATGTTTTTGGTTTTGGTCTGTTGTCATCACGTG
GGAGGTCAAGAGCGATTAGAAGAGGAAAATCAATTCCATCACGAAAGTCT
CATAATATAAATCAAGAAGGCTGTGGGCTTGTTTTCTTTTTATATTATGT
TTTTGGTTTTGGTCTGTTGTCATCACGTGGGACCTCTCTTCACTCTACTC
CTCGTCTTCACCTTGCTATTCGCCGACCCATTTCTCCCTCTTGTCGCCAT
TTTTGTTGTCCCCCTCGGCCAGTAAATTTTGATTGCTGAAGAATAAACGA
ATGCATCGCTTCTGTTTTTGGAAAATCTATCAAATAATTATATGTGGTCA
TCGCGACCATTTCACACTCTCCTCCTCGATCCCTGGAGGGTGTATCCACC
CACAAAAACCCACACAAAGAAAGGCATTGCCGTCTCTCCTTTCATGAA
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Coding sequence (CDS) from alignment at scaffold_2:863870..864667+

>mRNA_962 ID=mRNA_962|Name=jgi.p|Nanoce1779_2|147521|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_2:863870..864667+ (Nannochloropsis oceanica)
ATGATGAAAAAGACGACGAGGAGAAGAAAGAAAGAGGAAGAGAACAACGA
AGAAAAGGAGAAGGAGAAGAGAAGACGACAAAGAAGAGGGAGGTCAAGAG
CGATTAGAAGAGGAAAATCAATTCCATCACGAAAGTCTCATAATATAAAT
CAAGAAGGCTGTGGGCTTGTTTTCTTTTTATATTATGTTTTTGGTTTTGG
TCTGTTGTCATCACGTGGGAGGTCAAGAGCGATTAGAAGAGGAAAATCAA
TTCCATCACGAAAGTCTCATAATATAAATCAAGAAGGCTGTGGGCTTGTT
TTCTTTTTATATTATGTTTTTGGTTTTGGTCTGTTGTCATCACGTGGGAC
CTCTCTTCACTCTACTCCTCGTCTTCACCTTGCTATTCGCCGACCCATTT
CTCCCTCTTGTCGCCATTTTTGTTGTCCCCCTCGGCCAGTAAATTTTGAT
TGCTGA
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Synonyms
Publications