jgi.p|Nanoce1779_2|605189, mRNA_9618 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605189
Unique NamemRNA_9618
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1439
Alignment locationscaffold_31:90438..92561 -

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Properties
Property NameValue
TranscriptId605275
TrackFilteredModels2
ProteinId605189
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:90438..92561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605189gene_9618Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605189mRNA_9618-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9618CDS_9618Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9618 ID=mRNA_9618|Name=jgi.p|Nanoce1779_2|605189|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp
CTGTGCCTGAGCCGAGACGTCGTACACAATGCCCTTAATGGATAGGAGAT
TCAAGTGCGCGTGGGCTTGGAGGGTGGCCAGGCTCATCTTCGGCAAGGAG
GAATAAGAGGGATCTGTTGTCGTCGTCGCTTCGGGATAGTTACGGCTGCC
GAAACCAAGGGGGCAGGTACTACTGCCTCCCCGTCCTTCTTTTCCTCTTC
CTTCTCCCGTTTGTGTCAACGTTGGAGCACGACCATATCCAAGGGGACAG
CCTCCGCCGCTAATGTTGCTGTCCATCGCGTGTCTTGTAGCGATGGTGGT
TGGCATAATGTCCGCTATAGCCGCAGTCAAGGAGATAGGCAAGAACTTGC
TCAGGAGGGACGTGAAGGGGCATTTGCTTTCTGCCGCTGCAACTGTTGAT
GTTGCTGCTGTCTGAGCCTCCACGGCAGTGGAATGGGATGGGGACGACGA
CAAGGACGGCGGCGACGATGACATGCCCTTCGGCCCACCAACAATCATGC
GATTGGCGTTTCCATCTGGATAGAAAAGGAAGAAGGAAGGTGTCGAGTAT
TGAGGTGCTGTGGAGTGGGGTGACAGTCCTTGTCATTCCGAGGGGAGACT
ACGAGAGCCCGCTCACTCAGCCCCGAGCTGGACGCCATTATTGCCATTTG
TCCCATAGCAGCATCAAGAACAAGACAGGAAGAAAGATAAGCCACATTTT
CTTGATAGTTTCCCCGTCCTTTTCGCTTTCCCTCATTTCATTGGTGTCCC
TGGTTCGGGTGTTGACCCTCCTTCCCTCCTTCCCTCCCTTCCTATGCTGG
CGTGATAGATGCGAGGATAAGAAGCCATCTGGTAGGCGTGTCGACTCATG
GAGGAGGGAAAGACACGTTTCTGCCGATTCGGGGGATGAATGTGTTGAGG
AGAGGGGAATGGAGGGAGGGAAGTAGCGAGTCACCACATATCTCATCCTT
TTTGGACGTTGTAACAGCACCTGTCCATCTGATTTACTCTCATTTTCATT
GAAGCAAGAAGGGAAATAAAAGGGTAGACGACGGCAGAGATATCGATGGT
TGAAGCAGAGGTAAGAAGACGGCAAGGGAAAAAGAAGAAGGAAGGAGGAA
GGAGAAGCAAGTGTCTTGCCCAGTACCGAGGCAGATGGGAATCTCGAACA
GGTTCCCGACAGAATGAACGGCAAATAGTCAGGAGGGCAGGTACGAGGGG
GAATGTAGAGTGGAGATGTGAAGGAGATGTAGAAACGTGCAACACCGTGG
GTAAATAAATTTAGTAGTGTGATGAATTGTGCAGTTGGGCAGACAGGGAA
CGGGGAAGGGGTTTAAGTGATTGATGTAGCGTCAAAGCAGGGAATGAGTG
TATCCAATAAGAAACAGAACAACGGCATGCAAAAAGCACGCAAGTTATAA
AATTTAACCCCCCCCCATGCGGGTGATGCGGACGCTGAC
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protein sequence of jgi.p|Nanoce1779_2|605189

>mRNA_9618-protein ID=mRNA_9618-protein|Name=jgi.p|Nanoce1779_2|605189|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MLLLSEPPRQWNGMGTTTRTAATMTCPSAHQQSCDWRFHLDRKGRRKVSS
IEVLWSGVTVLVIPRGDYESPLTQPRAGRHYCHLSHSSIKNKTGRKISHI
FLIVSPSFSLSLISLVSLVRVLTLLPSFPPFLCWRDRCEDKKPSGRRVDS
WRRERHVSADSGDECVEERGMEGGK*
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mRNA from alignment at scaffold_31:90438..92561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9618 ID=mRNA_9618|Name=jgi.p|Nanoce1779_2|605189|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp|location=Sequence derived from alignment at scaffold_31:90438..92561- (Nannochloropsis oceanica)
CTGTGCCTGAGCCGAGACGTCGTACACAATGCCCTTAATGGATAGGAGAT
TCAAGTGCGCGTGGGCTTGGAGGGTGGCCAGGCTCATCTTCGGCAAGGAG
GAATAAGAGGGATCTGTTGTCGTCGTCGCTTCGGGATAGTTACGGCTGCC
GAAACCAAGGGGGCAGGTACTACTGCCTCCCCGTCCTTCTTTTCCTCTTC
CTTCTCCCGTTTGTGTCAACGTTGGAGCACGACCATATCCAAGGGGACAG
CCTCCGCCGCTAATGTTGCTGTCCATCGCGTGTCTTGTAGCGATGGTGGT
TGGCATAATGTCCGCTATAGCCGCAGTCAAGGAGATAGGCAAGAACTTGC
TCAGGAGGGACGTGAAGGGGCATTTGCTTTCTGCCGCTGCAACTGTTGAT
GTTGCTGCTGTCTGAGCCTCCACGGCAGTGGAATGGGATGGGGACGACGA
CAAGGACGGCGGCGACGATGACATGCCTGTGTTTTTTTTGGGTGTGCGAT
GTGTAATTTTGAGCGCGTGGTGCGGTTGTGTTGTGTGCAAAAAATGGATG
CGCATATGCATGGACTTGACGCAGCAACTGCTCTCGCTGATTTCCATTTC
CAACGTGCATGCGCGGCAATCCTGCCGCATGCTCACCATGCCCTACCCCT
CGCACACCGAACAGCCTGTTATGACACATGAAAAGCTGCATACACCTAGG
TGCGTCGTCGTCATCCTTCCTTCCATCAAGGCAGCGTTATGCCTTCCTCC
CCTCCTCCCGCAATAGCGGCAGCCCCTCCTCTTCTGTGCCTCCTCCGACT
TGCAATGGAGGAAAGCAGGTTGCATCAAAGTATCCACAACAATGTCTGCG
AGTAGTCAAAACAAGAGATATTCCCCTAATGGCTGGGTGAGAAGAACATC
CCGTTCTACATTTTTCCACAGCGAAAAAATTACGAAGAAAGAGGGAGGAG
GAGGAGACCCATCATTCTTCTTCTCCTCCTTCTTCCTTTCCCCTCTTCCT
ACATCTCATCACGCACCCTTCGGCCCACCAACAATCATGCGATTGGCGTT
TCCATCTGGATAGAAAAGGAAGAAGGAAGGTGTCGAGTATTGAGGTGCTG
TGGAGTGGGGTGACAGTCCTTGTCATTCCGAGGGGAGACTACGAGAGCCC
GCTCACTCAGGTCAGTAAGAGATGAAGCAAGAGCAAAAATCCATTCAAGG
CTTTATCAATTGCCCCCTTTCACCCTTTCTCGCGTGACTCTCCTTTCCCT
CTTTTCATTCCCTCATTCCCTCGCTCCTCCCATCCCTATGTACCCACGCC
CTCAGCCCCGAGCTGGACGCCATTATTGCCATTTGTCCCATAGCAGCATC
AAGAACAAGACAGGAAGAAAGATAAGCCACATTTTCTTGATAGTTTCCCC
GTCCTTTTCGCTTTCCCTCATTTCATTGGTGTCCCTGGTTCGGGTGTTGA
CCCTCCTTCCCTCCTTCCCTCCCTTCCTATGCTGGCGTGATAGATGCGAG
GATAAGAAGCCATCTGGTAGGCGTGTCGACTCATGGAGGAGGGAAAGACA
CGTTTCTGCCGATTCGGGGGATGAATGTGTTGAGGAGAGGGGAATGGAGG
GAGGGAAGTAGCGAGTCACCACATATCTCATCCTTTTTGGACGTTGTAAC
AGCACCTGTCCATCTGATTTACTCTCATTTTCATTGAAGCAAGAAGGGAA
ATAAAAGGGTAGACGACGGCAGAGATATCGATGGTTGAAGCAGAGGTAAG
AAGACGGCAAGGGAAAAAGAAGAAGGAAGGAGGAAGGAGAAGCAAGTGTC
TTGCCCAGTACCGAGGCAGATGGGAATCTCGAACAGGTTCCCGACAGAAT
GAACGGCAAATAGTCAGGAGGGCAGGTACGAGGGGGAATGTAGAGTGGAG
ATGTGAAGGAGATGTAGAAACGTGCAACACCGTGGGTAAATAAATTTAGT
AGTGTGATGAATTGTGCAGTTGGGCAGACAGGGAACGGGGAAGGGGTTTA
AGTGATTGATGTAGCGTCAAAGCAGGGAATGAGTGTATCCAATAAGAAAC
AGAACAACGGCATGCAAAAAGCACGCAAGTTATAAAATTTAACCCCCCCC
CATGCGGGTGATGCGGACGCTGAC
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Coding sequence (CDS) from alignment at scaffold_31:90438..92561-

>mRNA_9618 ID=mRNA_9618|Name=jgi.p|Nanoce1779_2|605189|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_31:90438..92561- (Nannochloropsis oceanica)
CTCAGCCCCGAGCTGGACGCCATTATTGCCATTTGTCCCATAGCAGCATC
AAGAACAAGACAGGAAGAAAGATAAGCCACATTTTCTTGATAGTTTCCCC
GTCCTTTTCGCTTTCCCTCATTTCATTGGTGTCCCTGGTTCGGGTGTTGA
CCCTCCTTCCCTCCTTCCCTCCCTTCCTATGCTGGCGTGATAGATGCGAG
GATAAGAAGCCATCTGGTAGGCGTGTCGACTCATGGAGGAGGGAAAGACA
CGTTTCTGCCGATTCGGGGGATGAATGTGTTGAGGAGAGGGGAATGGAGG
GAGGGAAGTAGCCTTCGGCCCACCAACAATCATGCGATTGGCGTTTCCAT
CTGGATAGAAAAGGAAGAAGGAAGGTGTCGAGTATTGAGGTGCTGTGGAG
TGGGGTGACAGTCCTTGTCATTCCGAGGGGAGACTACGAGAGCCCGCTCA
ATGTTGCTGCTGTCTGAGCCTCCACGGCAGTGGAATGGGATGGGGACGAC
GACAAGGACGGCGGCGACGATGACATGCCTCAGCCCCGAGCTGGACGCCA
TTATTGCCATTTGTCCCATAGCAGCATCAAGAACAAGACAGGAAGAAAGA
TAAGCCACATTTTCTTGATAGTTTCCCCGTCCTTTTCGCTTTCCCTCATT
TCATTGGTGTCCCTGGTTCGGGTGTTGACCCTCCTTCCCTCCTTCCCTCC
CTTCCTATGCTGGCGTGATAGATGCGAGGATAAGAAGCCATCTGGTAGGC
GTGTCGACTCATGGAGGAGGGAAAGACACGTTTCTGCCGATTCGGGGGAT
GAATGTGTTGAGGAGAGGGGAATGGAGGGAGGGAAGTAGCCTTCGGCCCA
CCAACAATCATGCGATTGGCGTTTCCATCTGGATAGAAAAGGAAGAAGGA
AGGTGTCGAGTATTGAGGTGCTGTGGAGTGGGGTGACAGTCCTTGTCATT
CCGAGGGGAGACTACGAGAGCCCGCTCAATGTTGCTGCTGTCTGAGCCTC
CACGGCAGTGGAATGGGATGGGGACGACGACAAGGACGGCGGCGACGATG
ACATGCCTCAGCCCCGAGCTGGACGCCATTATTGCCATTTGTCCCATAGC
AGCATCAAGAACAAGACAGGAAGAAAGATAAGCCACATTTTCTTGATAGT
TTCCCCGTCCTTTTCGCTTTCCCTCATTTCATTGGTGTCCCTGGTTCGGG
TGTTGACCCTCCTTCCCTCCTTCCCTCCCTTCCTATGCTGGCGTGATAGA
TGCGAGGATAAGAAGCCATCTGGTAGGCGTGTCGACTCATGGAGGAGGGA
AAGACACGTTTCTGCCGATTCGGGGGATGAATGTGTTGAGGAGAGGGGAA
TGGAGGGAGGGAAGTAGCCTTCGGCCCACCAACAATCATGCGATTGGCGT
TTCCATCTGGATAGAAAAGGAAGAAGGAAGGTGTCGAGTATTGAGGTGCT
GTGGAGTGGGGTGACAGTCCTTGTCATTCCGAGGGGAGACTACGAGAGCC
CGCTCAATGTTGCTGCTGTCTGAGCCTCCACGGCAGTGGAATGGGATGGG
GACGACGACAAGGACGGCGGCGACGATGACATGC
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Synonyms
Publications