jgi.p|Nanoce1779_2|605184, mRNA_9617 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605184
Unique NamemRNA_9617
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1050
Alignment locationscaffold_31:88348..90136 -

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Properties
Property NameValue
TranscriptId605270
TrackFilteredModels2
ProteinId605184
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:88348..90136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605184gene_9617Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605184mRNA_9617-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9617CDS_9617Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9617 ID=mRNA_9617|Name=jgi.p|Nanoce1779_2|605184|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
AGGCCTCAACCAAGCCTTACATATCACCAACGAAAAAGCCATGTTCCGCC
TCCGCTTTGCCGCTGCGCTCCTCCTCCTCCCCCTCGCCACCGGGCGGGTG
ATTATGTTTGGAGATTCAATGTTCTCAAACGGGGCCATCAAGGACGTGTT
GGAGACCTTGGCCGGAGGAAAAGTCAAGATCGAGAACTCAGCCTTAGTGG
GCGCGAGCTTTCACGACGGGTGGGTGCCTTCCATCCCGGCTCAGTATAAC
TACATTTCCAAGATCCCCGTGCCCGTGACAGCCATCATGGACGGCGGCGG
CAATGACGTGATGAGCGTGAAAGACAACTGCGTGGCCTACGATACCCGGT
GCAAGCAACAGATCGCAGAGGCCATGTCCATCCTAAGCGAGCTTTTGGAG
AAGATGCACAAGGACGGGATCCAGCACGTAATTTTCATGGGCCCCTTCTA
CGAGCAGGACCTGAACAAGGCGGTGGACGGGGCCTATCCAATGCTGGCCA
AGGTGTGCAAGGAGGCCGCCATTGACTGCCACCTTGCCGACACTCGCGAC
ATCAACCCCCCCCTGGGCGACGACAACATGCATCCCATTCAAGCGGGGTA
TGAAATGCTTGCCCACCGGATTTGGGAGGTTAAGCTTGACAACGACATTC
CCTTCTTTTAAATTCTGATAAAGACGATGAGAGTGAGAAGAGGAAGAGGC
GGAAAGTGCGAAGGAATCTATAGGAGGTAATCAAAGAGGGGTCGGACAGT
GAGAGAAGGAAGAAAATAAAAGGGTAATGGATGAGACCGAGGCGGTGGTG
CTGCCTGGGATCTGGGTTTGGAGGGTGGGAATCAATCAAAAGGAGACAAT
AAGGGAATGGAAGAATCAGGACACGAAGAGCAGACGTACGACAAAGGCTG
AAGAGCATGAAGGAGGTGACGCCATCTTATCATGCGGAGCGGCAAAGAAG
GAAAGGAAGCAAAAATGCTTTCGACGCATGACGCTAAGAAAGGAGCTTGA
GTATCGATAGACGAAATTAAAGATGAATGAAAGAGAAAGAGAGATCGCTA
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protein sequence of jgi.p|Nanoce1779_2|605184

>mRNA_9617-protein ID=mRNA_9617-protein|Name=jgi.p|Nanoce1779_2|605184|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MFRLRFAAALLLLPLATGRVIMFGDSMFSNGAIKDVLETLAGGKVKIENS
ALVGASFHDGWVPSIPAQYNYISKIPVPVTAIMDGGGNDVMSVKDNCVAY
DTRCKQQIAEAMSILSELLEKMHKDGIQHVIFMGPFYEQDLNKAVDGAYP
MLAKVCKEAAIDCHLADTRDINPPLGDDNMHPIQAGYEMLAHRIWEVKLD
NDIPFF*
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mRNA from alignment at scaffold_31:88348..90136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9617 ID=mRNA_9617|Name=jgi.p|Nanoce1779_2|605184|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp|location=Sequence derived from alignment at scaffold_31:88348..90136- (Nannochloropsis oceanica)
AGGCCTCAACCAAGCCTTACATATCACCAACGAAAAAGCCATGTTCCGCC
TCCGCTTTGCCGCTGCGCTCCTCCTCCTCCCCCTCGCCACCGGGCGGGTG
ATTATGTTTGGAGATTCAATGTTCTCAAACGGGGCCATCAAGGACGTGTT
GGAGACCTTGGCCGGAGGAAAAGTCAAGATCGAGAACTCAGCCTTAGTGG
GCGCGAGCTTTCACGACGGGTAGGTGCGCGTGTGTGTACAGGGGAAGAAC
AGCAATGAGAGATGCGGGAGGAGGAAACAATAACTCTGGTCCCTCCAAAG
AGGTCTCCCAACCCCTGTTCCCTCTCTCTTGTCCTTCTTTCCTCCTGCCT
GCATTCCTTAGGTGGGTGCCTTCCATCCCGGCTCAGTATAACTACATTTC
CAAGATCCCCGTGCCCGTGACAGCCATCATGGACGGGTACGTACCCCAGC
GAGTCACGTCGTCAACATTCAATTCTGAAGGGTTGTGCGAGTGCTTACGC
GCACGTGTGCTGTCTCTTGTTGACTATCATCGATTAAGAAGCGTTTTTTT
TGGTATCTTCCTATTTGTACGATTTGTCTTTCTTTTTCATTCCCCTTGAG
TACTGCGCTTCATATAATAGTATATGTCTATATGTCTGGTCTGGACTGTC
ATTGATTCATTGATTCATTTCATCATCCCATCCTCCCTCTGACTCAGCGG
CGGCAATGACGTGATGAGCGTGAAAGACAACTGCGTGGCCTACGATACCC
GGTGCAAGCAACAGATCGCAGAGGCCATGTCCATCCTAAGCGAGCTTTTG
GAGAAGATGCACAAGGACGGGATCCAGCACGTAATTTTCATGGGGTAAGG
AGGGAGGGAGGGAGAGAGAGAAGGGGGCGGTAAGACAGAGAAAGAATGGG
TTTGGCAGTTATCGTGCGCGAGTGATACCGGGGATATCAATCGGGGCATT
TGACGATCACCAAAAATATGAAGGTGATCAGGTCAACACAAGGAAACACT
GGCCGCCTACGCTCCCTCATTTTCCTCCCCTTCCCTTCATTCCCTCTCTT
CCCCTCCTATCCCAGCCCCTTCTACGAGCAGGACCTGAACAAGGCGGTGG
ACGGGGCCTATCCAATGCTGGCCAAGGTGTGCAAGGAGGCCGCCATTGAC
TGCCACCTTGCCGACACTCGCGACATCAACCCCCCCCTGGTAAGGAGTGA
GGGAGGGAGGGGAAGGGGAGGGTGTAAGGGCCACAAAGGACGTCTCGGTT
TGATATTCAGTCACTCACGGACAACATATCTCTACGTACTCCACACAAAC
ACAGGGCGACGACAACATGCATCCCATTCAAGCGGGGTATGAAATGCTTG
CCCACCGGATTTGGGAGGTTAAGCTTGACAACGACATTCCCTTCTTTTAA
ATTCTGATAAAGACGATGAGAGTGAGAAGAGGAAGAGGCGGAAAGTGCGA
AGGAATCTATAGGAGGTAATCAAAGAGGGGTCGGACAGTGAGAGAAGGAA
GAAAATAAAAGGGTAATGGATGAGACCGAGGCGGTGGTGCTGCCTGGGAT
CTGGGTTTGGAGGGTGGGAATCAATCAAAAGGAGACAATAAGGGAATGGA
AGAATCAGGACACGAAGAGCAGACGTACGACAAAGGCTGAAGAGCATGAA
GGAGGTGACGCCATCTTATCATGCGGAGCGGCAAAGAAGGAAAGGAAGCA
AAAATGCTTTCGACGCATGACGCTAAGAAAGGAGCTTGAGTATCGATAGA
CGAAATTAAAGATGAATGAAAGAGAAAGAGAGATCGCTA
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Coding sequence (CDS) from alignment at scaffold_31:88348..90136-

>mRNA_9617 ID=mRNA_9617|Name=jgi.p|Nanoce1779_2|605184|organism=Nannochloropsis oceanica|type=CDS|length=3105bp|location=Sequence derived from alignment at scaffold_31:88348..90136- (Nannochloropsis oceanica)
GGCGACGACAACATGCATCCCATTCAAGCGGGGTATGAAATGCTTGCCCA
CCGGATTTGGGAGGTTAAGCTTGACAACGACATTCCCTTCTTTTAACCCC
TTCTACGAGCAGGACCTGAACAAGGCGGTGGACGGGGCCTATCCAATGCT
GGCCAAGGTGTGCAAGGAGGCCGCCATTGACTGCCACCTTGCCGACACTC
GCGACATCAACCCCCCCCTGCGGCGGCAATGACGTGATGAGCGTGAAAGA
CAACTGCGTGGCCTACGATACCCGGTGCAAGCAACAGATCGCAGAGGCCA
TGTCCATCCTAAGCGAGCTTTTGGAGAAGATGCACAAGGACGGGATCCAG
CACGTAATTTTCATGGGGTGGGTGCCTTCCATCCCGGCTCAGTATAACTA
CATTTCCAAGATCCCCGTGCCCGTGACAGCCATCATGGACGGATGTTCCG
CCTCCGCTTTGCCGCTGCGCTCCTCCTCCTCCCCCTCGCCACCGGGCGGG
TGATTATGTTTGGAGATTCAATGTTCTCAAACGGGGCCATCAAGGACGTG
TTGGAGACCTTGGCCGGAGGAAAAGTCAAGATCGAGAACTCAGCCTTAGT
GGGCGCGAGCTTTCACGACGGGGCGACGACAACATGCATCCCATTCAAGC
GGGGTATGAAATGCTTGCCCACCGGATTTGGGAGGTTAAGCTTGACAACG
ACATTCCCTTCTTTTAACCCCTTCTACGAGCAGGACCTGAACAAGGCGGT
GGACGGGGCCTATCCAATGCTGGCCAAGGTGTGCAAGGAGGCCGCCATTG
ACTGCCACCTTGCCGACACTCGCGACATCAACCCCCCCCTGCGGCGGCAA
TGACGTGATGAGCGTGAAAGACAACTGCGTGGCCTACGATACCCGGTGCA
AGCAACAGATCGCAGAGGCCATGTCCATCCTAAGCGAGCTTTTGGAGAAG
ATGCACAAGGACGGGATCCAGCACGTAATTTTCATGGGGTGGGTGCCTTC
CATCCCGGCTCAGTATAACTACATTTCCAAGATCCCCGTGCCCGTGACAG
CCATCATGGACGGATGTTCCGCCTCCGCTTTGCCGCTGCGCTCCTCCTCC
TCCCCCTCGCCACCGGGCGGGTGATTATGTTTGGAGATTCAATGTTCTCA
AACGGGGCCATCAAGGACGTGTTGGAGACCTTGGCCGGAGGAAAAGTCAA
GATCGAGAACTCAGCCTTAGTGGGCGCGAGCTTTCACGACGGGGCGACGA
CAACATGCATCCCATTCAAGCGGGGTATGAAATGCTTGCCCACCGGATTT
GGGAGGTTAAGCTTGACAACGACATTCCCTTCTTTTAACCCCTTCTACGA
GCAGGACCTGAACAAGGCGGTGGACGGGGCCTATCCAATGCTGGCCAAGG
TGTGCAAGGAGGCCGCCATTGACTGCCACCTTGCCGACACTCGCGACATC
AACCCCCCCCTGCGGCGGCAATGACGTGATGAGCGTGAAAGACAACTGCG
TGGCCTACGATACCCGGTGCAAGCAACAGATCGCAGAGGCCATGTCCATC
CTAAGCGAGCTTTTGGAGAAGATGCACAAGGACGGGATCCAGCACGTAAT
TTTCATGGGGTGGGTGCCTTCCATCCCGGCTCAGTATAACTACATTTCCA
AGATCCCCGTGCCCGTGACAGCCATCATGGACGGATGTTCCGCCTCCGCT
TTGCCGCTGCGCTCCTCCTCCTCCCCCTCGCCACCGGGCGGGTGATTATG
TTTGGAGATTCAATGTTCTCAAACGGGGCCATCAAGGACGTGTTGGAGAC
CTTGGCCGGAGGAAAAGTCAAGATCGAGAACTCAGCCTTAGTGGGCGCGA
GCTTTCACGACGGGGCGACGACAACATGCATCCCATTCAAGCGGGGTATG
AAATGCTTGCCCACCGGATTTGGGAGGTTAAGCTTGACAACGACATTCCC
TTCTTTTAACCCCTTCTACGAGCAGGACCTGAACAAGGCGGTGGACGGGG
CCTATCCAATGCTGGCCAAGGTGTGCAAGGAGGCCGCCATTGACTGCCAC
CTTGCCGACACTCGCGACATCAACCCCCCCCTGCGGCGGCAATGACGTGA
TGAGCGTGAAAGACAACTGCGTGGCCTACGATACCCGGTGCAAGCAACAG
ATCGCAGAGGCCATGTCCATCCTAAGCGAGCTTTTGGAGAAGATGCACAA
GGACGGGATCCAGCACGTAATTTTCATGGGGTGGGTGCCTTCCATCCCGG
CTCAGTATAACTACATTTCCAAGATCCCCGTGCCCGTGACAGCCATCATG
GACGGATGTTCCGCCTCCGCTTTGCCGCTGCGCTCCTCCTCCTCCCCCTC
GCCACCGGGCGGGTGATTATGTTTGGAGATTCAATGTTCTCAAACGGGGC
CATCAAGGACGTGTTGGAGACCTTGGCCGGAGGAAAAGTCAAGATCGAGA
ACTCAGCCTTAGTGGGCGCGAGCTTTCACGACGGGGCGACGACAACATGC
ATCCCATTCAAGCGGGGTATGAAATGCTTGCCCACCGGATTTGGGAGGTT
AAGCTTGACAACGACATTCCCTTCTTTTAACCCCTTCTACGAGCAGGACC
TGAACAAGGCGGTGGACGGGGCCTATCCAATGCTGGCCAAGGTGTGCAAG
GAGGCCGCCATTGACTGCCACCTTGCCGACACTCGCGACATCAACCCCCC
CCTGCGGCGGCAATGACGTGATGAGCGTGAAAGACAACTGCGTGGCCTAC
GATACCCGGTGCAAGCAACAGATCGCAGAGGCCATGTCCATCCTAAGCGA
GCTTTTGGAGAAGATGCACAAGGACGGGATCCAGCACGTAATTTTCATGG
GGTGGGTGCCTTCCATCCCGGCTCAGTATAACTACATTTCCAAGATCCCC
GTGCCCGTGACAGCCATCATGGACGGATGTTCCGCCTCCGCTTTGCCGCT
GCGCTCCTCCTCCTCCCCCTCGCCACCGGGCGGGTGATTATGTTTGGAGA
TTCAATGTTCTCAAACGGGGCCATCAAGGACGTGTTGGAGACCTTGGCCG
GAGGAAAAGTCAAGATCGAGAACTCAGCCTTAGTGGGCGCGAGCTTTCAC
GACGG
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Synonyms
Publications