jgi.p|Nanoce1779_2|574807, mRNA_961 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574807
Unique Name	mRNA_961
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2573
Alignment location	scaffold_2:861830..864402 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574893
Track	FilteredModels2
ProteinId	574807

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:861830..864402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574807	gene_961	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574807	mRNA_961-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_961	CDS_961	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:861830..864402+
coding sequence from alignment at scaffold_2:861830..864402+

mRNA sequence

>mRNA_961 ID=mRNA_961|Name=jgi.p|Nanoce1779_2|574807|organism=Nannochloropsis oceanica|type=mRNA|length=2573bp
ACAGAGGCTCTTTCATCTGCTCAAGGTCGGGGAGCACGAGAGTCGTTCCG
GCACACCTCACAACCTTGCGCCCGCCGCTTGTTGTTCTGTGAAAGAAACG
GAAGGATCGACCCTGGCCCAACCCGCCCCTGCCCTCTCCCCACGCACCAC
CGCCGCAACACCACCACTTTCGTCGACGACCATGTCTACAGGAACTACAC
AGCAGACCAGTGGTTGTGGCGTGAAGGAGATGATGGGCTCTTTGTCTCTA
GAGGAAGCCACCACGCCTCCCCCCAACAACAGGAGCGGGATCGACACCTC
GGCGGGTGCACCTGCCGCGGACGCCGTATCCACGCCCAGCACAGCCACCA
CGGTCGACATGACCAATTCTGAGTCCTTCAGTCTCTCTCTCTCTGGGAGA
GCAGGGGGTGGTGAACAGCTTGTCCGTGGCGCTTCGGTATCTAAGCCGAT
GCAGGTCAAGCACCACATCCACGTCTCCTTCGATCCTGCCAGCGGGGCCT
TCAAGGGCCTGCCCCCCGAGTGGGGCAGACATTTACCTGACGGCGTTTCA
AAAGATGAGACCAAGGTGACGGCGACGGATCGGCATGTGGCCCCGCCCAA
ACCCACGGCCGAGGTAAAGAAGACCTTAAACCCTCTAAGGAAATTTAGTT
GGTGGGGCGGACCAGGCAAGAGCAGCAGTGACAAGAATGCCCCATTGGCC
GGAACCGTGATTGGCGCACCATTCAATGTACAACACACCACGCACGTTCG
CCCGGATTTGACCTCGTCCACGGGGTTTAGTGGCCTCCCTCCTGCGTGGC
GCGCCGTACTTAAGGTCTCAGGTATCACAAAGCAGGAAGCGGTCGATCAC
CCTCAAGCTGTGCTGGCTGCTTTGAACTTCCACATGCAAGGCCCCACGCA
TACTAGAGGGCCACTCCCAACGCGGGCTGCGGTGGAGCAGGCAATGGCTA
AGGCGCTGCGGATAGTCCAGGATGACCCTAGGCAGTACTTCACTGATTTG
AAGCGGTTGGGGCAGGGGGCGAGTGGGACAGTCTATGCCGCTACGGATCG
AAGAACGGGAGAGAGGAGGGCGTTGAAAATTGCACCAGTGAGCGAATTAG
CTGATTTGACGAACGAAATTGGGTTGCAGAGTATGAGTGATCACCCGAAT
ATTGTGAGAATTTATGAGGCGTTTGTAACAACGTCGGAGGTGTGCATTGT
CATGGAGTTGATGATGGGGGGGAGTTTGACCGATGTCCTTGGGAAGCAAG
TCGTTGATTTCAAGGAGCCACACATTGCATATGTGGCGAAGGCGGTGTTG
TCTGCCTTATCGTACATGCACGGGTCTTATCGAATGCATCGGGATATAAA
ATCCGATAACGTGTTGGTAGATAAGGAGGGACAGGTTAAGATTGCAGATT
TCGGGTTTGCGATCGCCTTGACCAAGGAAACGAGTAAGAGGCATTCAGTG
GTGGGGACGCCGTACTGGATGGCACCAGAGCTAATTCGGGGGACGGATTA
TGATTCGAAGGTGGATATCTGGTCGTGTGGGATAACCTGTATTGAGATGG
CGGAAGGCGAACCTCCCCATTTGCATGAACCCCCCCTCCGTGCCTTGCTC
ATGATCTCGATTTCAGGCTCCCCGACGTTGAAAGACCCCTCGCGATGGTC
CTCGCAGTTTTTGCATTTTCTGGCCCAGACCACATCAATAGATGCGGAAG
CCCGCCCGACGGCCGAGCAGTTGCTAAACCATCCGTTTATTACCATGGCA
TCCACTCAGGAGGAGTATGGGCAGTTTGTCCGAGGACAGCTTGAGGCACG
ACGACGACGAAAACAACAGCAGGCTCAGCAAATTCAAGCCGCGCACCATA
AGAAATAATCCCAGGGAAGGAGGTAAGGAGGATTGGAGGGGAGTTGTATT
CTTTTGGTGGTTGTGGTCACGAAGGGTTGTGTGTGTTGGTGTGTGATGTT
TTGCTCCACACGTACCGTATGAACATACGCTCGCATTTGGCATGAGGGAA
GAAGGCTGTCTGATCAGCACCAGAGGGGTTACTAGGTGAGAAGAAGGACT
GTGGGACTGTGGGTGTATGAATGCATGGAGGAAGGAAGGGAGGGAAATGC
CGCTTGCCGTCAAGGTGTAAGAGCGTCGTCAAGGCAGGCGGGGCGGGGAG
GGAAACGAGTTGCTTTTATGTGCAAACAAATATTTAAAGCTTGTTCACGA
CAAAAAGAAGAAGGAAAGCGAAGATGATGAAAAAGACGACGAGGAGAAGA
AAGAAAGAGGAAGAGAACAACGAAGAAAAGGAGAAGGAGAAGAGAAGACG
ACAAAGAAGAGGGAGGTCAAGAGCGATTAGAAGAGGAAAATCAATTCCAT
CACGAAAGTCTCATAATATAAATCAAGAAGGCTGTGGGCTTGTTTTCTTT
TTATATTATGTTTTTGGTTTTGGTCTGTTGTCATCACGTGGGAGGTCAAG
AGCGATTAGAAGAGGAAAATCAATTCCATCACGAAAGTCTCATAATATAA
ATCAAGAAGGCTGTGGGCTTGTTTTCTTTTTATATTATGTTTTTGGTTTT
GGTCTGTTGTCATCACGTGGGAC

protein sequence of jgi.p|Nanoce1779_2|574807

>mRNA_961-protein ID=mRNA_961-protein|Name=jgi.p|Nanoce1779_2|574807|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MSTGTTQQTSGCGVKEMMGSLSLEEATTPPPNNRSGIDTSAGAPAADAVS
TPSTATTVDMTNSESFSLSLSGRAGGGEQLVRGASVSKPMQVKHHIHVSF
DPASGAFKGLPPEWGRHLPDGVSKDETKVTATDRHVAPPKPTAEVKKTLN
PLRKFSWWGGPGKSSSDKNAPLAGTVIGAPFNVQHTTHVRPDLTSSTGFS
GLPPAWRAVLKVSGITKQEAVDHPQAVLAALNFHMQGPTHTRGPLPTRAA
VEQAMAKALRIVQDDPRQYFTDLKRLGQGASGTVYAATDRRTGERRALKI
APVSELADLTNEIGLQSMSDHPNIVRIYEAFVTTSEVCIVMELMMGGSLT
DVLGKQVVDFKEPHIAYVAKAVLSALSYMHGSYRMHRDIKSDNVLVDKEG
QVKIADFGFAIALTKETSKRHSVVGTPYWMAPELIRGTDYDSKVDIWSCG
ITCIEMAEGEPPHLHEPPLRALLMISISGSPTLKDPSRWSSQFLHFLAQT
TSIDAEARPTAEQLLNHPFITMASTQEEYGQFVRGQLEARRRRKQQQAQQ
IQAAHHKK*

mRNA from alignment at scaffold_2:861830..864402+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_961 ID=mRNA_961|Name=jgi.p|Nanoce1779_2|574807|organism=Nannochloropsis oceanica|type=mRNA|length=2573bp|location=Sequence derived from alignment at scaffold_2:861830..864402+ (Nannochloropsis oceanica)
ACAGAGGCTCTTTCATCTGCTCAAGGTCGGGGAGCACGAGAGTCGTTCCG
GCACACCTCACAACCTTGCGCCCGCCGCTTGTTGTTCTGTGAAAGAAACG
GAAGGATCGACCCTGGCCCAACCCGCCCCTGCCCTCTCCCCACGCACCAC
CGCCGCAACACCACCACTTTCGTCGACGACCATGTCTACAGGAACTACAC
AGCAGACCAGTGGTTGTGGCGTGAAGGAGATGATGGGCTCTTTGTCTCTA
GAGGAAGCCACCACGCCTCCCCCCAACAACAGGAGCGGGATCGACACCTC
GGCGGGTGCACCTGCCGCGGACGCCGTATCCACGCCCAGCACAGCCACCA
CGGTCGACATGACCAATTCTGAGTCCTTCAGTCTCTCTCTCTCTGGGAGA
GCAGGGGGTGGTGAACAGCTTGTCCGTGGCGCTTCGGTATCTAAGCCGAT
GCAGGTCAAGCACCACATCCACGTCTCCTTCGATCCTGCCAGCGGGGCCT
TCAAGGGCCTGCCCCCCGAGTGGGGCAGACATTTACCTGACGGCGTTTCA
AAAGATGAGACCAAGGTGACGGCGACGGATCGGCATGTGGCCCCGCCCAA
ACCCACGGCCGAGGTAAAGAAGACCTTAAACCCTCTAAGGAAATTTAGTT
GGTGGGGCGGACCAGGCAAGAGCAGCAGTGACAAGAATGCCCCATTGGCC
GGAACCGTGATTGGCGCACCATTCAATGTACAACACACCACGCACGTTCG
CCCGGATTTGACCTCGTCCACGGGGTTTAGTGGCCTCCCTCCTGCGTGGC
GCGCCGTACTTAAGGTCTCAGGTATCACAAAGCAGGAAGCGGTCGATCAC
CCTCAAGCTGTGCTGGCTGCTTTGAACTTCCACATGCAAGGCCCCACGCA
TACTAGAGGGCCACTCCCAACGCGGGCTGCGGTGGAGCAGGCAATGGCTA
AGGCGCTGCGGATAGTCCAGGATGACCCTAGGCAGTACTTCACTGATTTG
AAGCGGTTGGGGCAGGGGGCGAGTGGGACAGTCTATGCCGCTACGGATCG
AAGAACGGGAGAGAGGAGGGCGTTGAAAATTGCACCAGTGAGCGAATTAG
CTGATTTGACGAACGAAATTGGGTTGCAGAGTATGAGTGATCACCCGAAT
ATTGTGAGAATTTATGAGGCGTTTGTAACAACGTCGGAGGTGTGCATTGT
CATGGAGTTGATGATGGGGGGGAGTTTGACCGATGTCCTTGGGAAGCAAG
TCGTTGATTTCAAGGAGCCACACATTGCATATGTGGCGAAGGCGGTGTTG
TCTGCCTTATCGTACATGCACGGGTCTTATCGAATGCATCGGGATATAAA
ATCCGATAACGTGTTGGTAGATAAGGAGGGACAGGTTAAGATTGCAGATT
TCGGGTTTGCGATCGCCTTGACCAAGGAAACGAGTAAGAGGCATTCAGTG
GTGGGGACGCCGTACTGGATGGCACCAGAGCTAATTCGGGGGACGGATTA
TGATTCGAAGGTGGATATCTGGTCGTGTGGGATAACCTGTATTGAGATGG
CGGAAGGCGAACCTCCCCATTTGCATGAACCCCCCCTCCGTGCCTTGCTC
ATGATCTCGATTTCAGGCTCCCCGACGTTGAAAGACCCCTCGCGATGGTC
CTCGCAGTTTTTGCATTTTCTGGCCCAGACCACATCAATAGATGCGGAAG
CCCGCCCGACGGCCGAGCAGTTGCTAAACCATCCGTTTATTACCATGGCA
TCCACTCAGGAGGAGTATGGGCAGTTTGTCCGAGGACAGCTTGAGGCACG
ACGACGACGAAAACAACAGCAGGCTCAGCAAATTCAAGCCGCGCACCATA
AGAAATAATCCCAGGGAAGGAGGTAAGGAGGATTGGAGGGGAGTTGTATT
CTTTTGGTGGTTGTGGTCACGAAGGGTTGTGTGTGTTGGTGTGTGATGTT
TTGCTCCACACGTACCGTATGAACATACGCTCGCATTTGGCATGAGGGAA
GAAGGCTGTCTGATCAGCACCAGAGGGGTTACTAGGTGAGAAGAAGGACT
GTGGGACTGTGGGTGTATGAATGCATGGAGGAAGGAAGGGAGGGAAATGC
CGCTTGCCGTCAAGGTGTAAGAGCGTCGTCAAGGCAGGCGGGGCGGGGAG
GGAAACGAGTTGCTTTTATGTGCAAACAAATATTTAAAGCTTGTTCACGA
CAAAAAGAAGAAGGAAAGCGAAGATGATGAAAAAGACGACGAGGAGAAGA
AAGAAAGAGGAAGAGAACAACGAAGAAAAGGAGAAGGAGAAGAGAAGACG
ACAAAGAAGAGGGAGGTCAAGAGCGATTAGAAGAGGAAAATCAATTCCAT
CACGAAAGTCTCATAATATAAATCAAGAAGGCTGTGGGCTTGTTTTCTTT
TTATATTATGTTTTTGGTTTTGGTCTGTTGTCATCACGTGGGAGGTCAAG
AGCGATTAGAAGAGGAAAATCAATTCCATCACGAAAGTCTCATAATATAA
ATCAAGAAGGCTGTGGGCTTGTTTTCTTTTTATATTATGTTTTTGGTTTT
GGTCTGTTGTCATCACGTGGGAC

Coding sequence (CDS) from alignment at scaffold_2:861830..864402+

>mRNA_961 ID=mRNA_961|Name=jgi.p|Nanoce1779_2|574807|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at scaffold_2:861830..864402+ (Nannochloropsis oceanica)
ATGTCTACAGGAACTACACAGCAGACCAGTGGTTGTGGCGTGAAGGAGAT
GATGGGCTCTTTGTCTCTAGAGGAAGCCACCACGCCTCCCCCCAACAACA
GGAGCGGGATCGACACCTCGGCGGGTGCACCTGCCGCGGACGCCGTATCC
ACGCCCAGCACAGCCACCACGGTCGACATGACCAATTCTGAGTCCTTCAG
TCTCTCTCTCTCTGGGAGAGCAGGGGGTGGTGAACAGCTTGTCCGTGGCG
CTTCGGTATCTAAGCCGATGCAGGTCAAGCACCACATCCACGTCTCCTTC
GATCCTGCCAGCGGGGCCTTCAAGGGCCTGCCCCCCGAGTGGGGCAGACA
TTTACCTGACGGCGTTTCAAAAGATGAGACCAAGGTGACGGCGACGGATC
GGCATGTGGCCCCGCCCAAACCCACGGCCGAGGTAAAGAAGACCTTAAAC
CCTCTAAGGAAATTTAGTTGGTGGGGCGGACCAGGCAAGAGCAGCAGTGA
CAAGAATGCCCCATTGGCCGGAACCGTGATTGGCGCACCATTCAATGTAC
AACACACCACGCACGTTCGCCCGGATTTGACCTCGTCCACGGGGTTTAGT
GGCCTCCCTCCTGCGTGGCGCGCCGTACTTAAGGTCTCAGGTATCACAAA
GCAGGAAGCGGTCGATCACCCTCAAGCTGTGCTGGCTGCTTTGAACTTCC
ACATGCAAGGCCCCACGCATACTAGAGGGCCACTCCCAACGCGGGCTGCG
GTGGAGCAGGCAATGGCTAAGGCGCTGCGGATAGTCCAGGATGACCCTAG
GCAGTACTTCACTGATTTGAAGCGGTTGGGGCAGGGGGCGAGTGGGACAG
TCTATGCCGCTACGGATCGAAGAACGGGAGAGAGGAGGGCGTTGAAAATT
GCACCAGTGAGCGAATTAGCTGATTTGACGAACGAAATTGGGTTGCAGAG
TATGAGTGATCACCCGAATATTGTGAGAATTTATGAGGCGTTTGTAACAA
CGTCGGAGGTGTGCATTGTCATGGAGTTGATGATGGGGGGGAGTTTGACC
GATGTCCTTGGGAAGCAAGTCGTTGATTTCAAGGAGCCACACATTGCATA
TGTGGCGAAGGCGGTGTTGTCTGCCTTATCGTACATGCACGGGTCTTATC
GAATGCATCGGGATATAAAATCCGATAACGTGTTGGTAGATAAGGAGGGA
CAGGTTAAGATTGCAGATTTCGGGTTTGCGATCGCCTTGACCAAGGAAAC
GAGTAAGAGGCATTCAGTGGTGGGGACGCCGTACTGGATGGCACCAGAGC
TAATTCGGGGGACGGATTATGATTCGAAGGTGGATATCTGGTCGTGTGGG
ATAACCTGTATTGAGATGGCGGAAGGCGAACCTCCCCATTTGCATGAACC
CCCCCTCCGTGCCTTGCTCATGATCTCGATTTCAGGCTCCCCGACGTTGA
AAGACCCCTCGCGATGGTCCTCGCAGTTTTTGCATTTTCTGGCCCAGACC
ACATCAATAGATGCGGAAGCCCGCCCGACGGCCGAGCAGTTGCTAAACCA
TCCGTTTATTACCATGGCATCCACTCAGGAGGAGTATGGGCAGTTTGTCC
GAGGACAGCTTGAGGCACGACGACGACGAAAACAACAGCAGGCTCAGCAA
ATTCAAGCCGCGCACCATAAGAAATAA

Synonyms

Publications