jgi.p|Nanoce1779_2|546857, mRNA_9608 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546857
Unique Name	mRNA_9608
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1918
Alignment location	scaffold_31:55818..58430 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	546943
Track	FilteredModels2
ProteinId	546857

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:55818..58430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546857	gene_9608	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546857	mRNA_9608-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9608	CDS_9608	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:55818..58430+
coding sequence from alignment at scaffold_31:55818..58430+

mRNA sequence

>mRNA_9608 ID=mRNA_9608|Name=jgi.p|Nanoce1779_2|546857|organism=Nannochloropsis oceanica|type=mRNA|length=1918bp
CAGGACGGGGTCTCCTCCATTTTGTCAGCCAAGACAAGTCGTCGTAAATG
AGGCCAACATCATCACAACCCCTTCAACTACTATTTGCCTGCCTGTGCTT
CCTGGCCCTCCTCCTCCTCCCTCTCCAGGCCACCGCCACCTCTACCGGGT
CAAGCGTCGCCGCTGTCACGACCAAGAGTAGCGGCAGCTGCAGCATTAGC
AGTGATAACAAGAAGAAGTCGGCCCTCGATCGCCTCCGCCGCATCTCTGG
CGGCGGAGGTTCATCTGCCCCCACGCCGAGTGCCAGCGTCTCCGGCACTC
GCGGTCCGGACGGGAAGATCATCGCCACGCCAGGCCAGGCCTTTCTGACA
GGGCTATTGTCAGGGGCCGTGGCTGGTATCACGGTGGACCTGACCCTCTT
CCCGCTGGACACGATCAAGACCCGGCTGCAAGCAAGTGCCAACACCAGGT
TCTCTCTAGAACTGCTCAAGGGCATGTATGATGGGGTGGGTCCAGGCCTC
TTGGCCTCCGCCCCGGCCTGCGCTGCTTTCTTTGGAGCCTATGACAGCTT
CAAGCGCAGTCTCACCGCCCGCTTTCCCGACCCCAAGCTCGCTCCCATCG
TCAACATGCTGGCGGCTGCAGGAGGCGACCTCACGCAGAGTGTGGTCCGT
GTGCCTTTTGAGGTGGTGAAGCAGCGCATGCAAGCGGGCGTGGAGCAAAC
CTGGCGCGAAGCCGTGACAAATATCATGGCGTCCTCGGGGCCCAGGGGAT
TCTTCGCCGGCTGGTCGGCGTTGGCGTTGCGTGACCTGCCCTTTGACATC
ATCGAGTTTCCCCTGTATGAGGCACTCAAGGCGCGGTGGGCAGCCAAGAA
AGGCCGGCCGCTCGAGACGTGGGAGGCGAGCGTGTGCGGGTCCCTGGCCG
GTGGCTTGGCGGCGGGGCTCACAACGCCGCTGGACGTAGTCAAGACGCGC
CTGATGACACAACGGGCGGGGCAGCATGCCTACACGGGCCTGCTGGACTG
TCTATGCCGCGTGGCTAAGGAGGAAGGTGTAAGTGCGCTCTACCGTGGGC
TTGTGCCCCGTGTAGTTAACATCGCTTTGGGCGGCGCCATCTTCTTCGGT
GCCTACGAGGCATTCAAACAGGTGGCTGACCGAGCGCTCGTGCAGAAGGA
CCTGGACTTGGTCGAGTGGTGGGCCGGGGTCAAGGCAAAGGCAGGCGAAA
TGCGCAAACGGCAATTCTCAAAGGGTGTGGGCGGCAGCCTGGCCAAGAAG
GGGGGCTTCGTGCCGATGGCCGCCGTGGTAGGGCCGCGGACAGGAAAGAG
TCGGACGGCACGCGCGGTGGGGGTGTGTGAATGAGGAAGTGCAGGAGTTG
GGGAAGGTTTCTTGCGATTGCGCGGTGGCGACTTATTTCCTTGTATGGGT
GGTGTGGAAGGAGGGGGGGAAAGCGAGACGGCAAGATTGAAGAGGAGAAG
GCGGATGTCAGATGAGAGGGGCACGCAAAGCATATTGAGTTATGTGTTGC
TTCGGGGAGTTGGGGTCAGGGTGCGCGGACGAAAGACGCCCACACCCTCT
CCTAGGTAACGTGCACATGCTCCGCCATCTGGACGGAGATGGAAGTAAAT
TCCGTCAACAATGGGAACACACACCAAGAAAAACAAAAGCATATGAGAGA
TGAAAACTCTACTAACTATTGTTAAAACACTCGCGGTCAGTCAACTTCGT
GGGATAATCATTCTTGTCGAGTGACAAATAAAATGGGTTGTTCTTGGCTT
GTGCGAGGTTGAAACTACACAGGGAAAAGAGTCTTCCAGCCTTTGCTCAC
AGCTTATATCTTGGTAGCCGATATTAAGCAACCTTTTGGCACATCTGAAT
AATATGTGCGACAAGTGCATCAAAAATGTTGATTCGGAGAGATTGGAATC
TGTACGGCACGTAAGGAC

protein sequence of jgi.p|Nanoce1779_2|546857

>mRNA_9608-protein ID=mRNA_9608-protein|Name=jgi.p|Nanoce1779_2|546857|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MRPTSSQPLQLLFACLCFLALLLLPLQATATSTGSSVAAVTTKSSGSCSI
SSDNKKKSALDRLRRISGGGGSSAPTPSASVSGTRGPDGKIIATPGQAFL
TGLLSGAVAGITVDLTLFPLDTIKTRLQASANTRFSLELLKGMYDGVGPG
LLASAPACAAFFGAYDSFKRSLTARFPDPKLAPIVNMLAAAGGDLTQSVV
RVPFEVVKQRMQAGVEQTWREAVTNIMASSGPRGFFAGWSALALRDLPFD
IIEFPLYEALKARWAAKKGRPLETWEASVCGSLAGGLAAGLTTPLDVVKT
RLMTQRAGQHAYTGLLDCLCRVAKEEGVSALYRGLVPRVVNIALGGAIFF
GAYEAFKQVADRALVQKDLDLVEWWAGVKAKAGEMRKRQFSKGVGGSLAK
KGGFVPMAAVVGPRTGKSRTARAVGVCE*

mRNA from alignment at scaffold_31:55818..58430+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9608 ID=mRNA_9608|Name=jgi.p|Nanoce1779_2|546857|organism=Nannochloropsis oceanica|type=mRNA|length=2613bp|location=Sequence derived from alignment at scaffold_31:55818..58430+ (Nannochloropsis oceanica)
CAGGACGGGGTCTCCTCCATTTTGTCAGCCAAGACAAGTCGTCGTAAATG
AGGCCAACATCATCACAACCCCTTCAACTACTATTTGCCTGCCTGTGCTT
CCTGGCCCTCCTCCTCCTCCCTCTCCAGGCCACCGCCACCTCTACCGGGT
CAAGCGTCGCCGCTGTCACGACCAAGAGTAGCGGCAGCTGCAGCATTAGC
AGTGATAACAAGAAGAAGTCGGTACGTAGTCGAGATCACCTCATCCCAGA
CCAGGCTGGGGGAGACAGTCCAACCCCGCCAAGTATCGTCACTCCATCTC
ATTTCCCCGTCACACGCCTGATGGGGCCTGTGAAGGATGAACTGTAGTCT
TTCCCAATTTTTGGAAAGCCAGGCGAGGTTTTTGCGGGCCATGCTGTTTT
CTCCTTATTACTTTCCTCTTACTTCTGGACTGCTCCATTCCCACCCCCTT
AAAAGTTCCCTGCCCTTGCTTGGATTACGGCACACGCTTACTACAAAAAT
CGCTACCATTAATTTTCAACTTACATCCTATGACCATCTTCTCTCGCATC
TCAGCCAAAAGACCAATTTTCTTCTTGGTCACTCCGTCTTATCCTATTTC
TTTCTTTCCCACCCTTCCCCTCCGTCTCCTATTTTCTCCTCCCTCAGGCC
CTCGATCGCCTCCGCCGCATCTCTGGCGGCGGAGGTTCATCTGCCCCCAC
GCCGAGTGCCAGCGTCTCCGGCACTCGCGGTCCGGACGGGAAGATCATCG
CCACGCCAGGCCAGGCCTTTCTGACAGGGCTATTGTCAGGGGCCGTGGCT
GGTATCACGGTGGACCTGACCCTCTTCCCGCTGGACACGATCAAGACCCG
GCTGCAAGCAAGTGCCAACACCAGGTTCTCTCTAGAACTGCTCAAGGGCA
TGTATGATGGGGTGGGTCCAGGCCTCTTGGCCTCCGCCCCGGCCTGCGCT
GCTTTCTTTGGAGCCTATGACAGCTTCAAGCGCAGTCTCACCGCCCGCTT
TCCCGACCCCAAGCTCGCTCCCATCGTCAACATGCTGGCGGCTGCAGGAG
GCGACCTCACGCAGAGTGTGGTCCGTGTGCCTTTTGAGGTCTGTCGCGAA
GGGGAATGAATGAGGGAGGGAGGGAGGGTGGGTGAGAGGGGGATCCCTGT
GTATGTTTTTGTGAAAAGAAAGGTGGTGGGTGGCTGCGTTGCTGTCGTTG
CCTCGCGGCGATCTGACGGTAATTGACGGCAAATTCCCTGCGGCATTCAC
GTCTTTTTTTTTCTATCTTGGTTTACCGAGAGCTCATCTCCTCCTCCTCC
CTCGCCTTCCTCTCTCCTGCGCCTCCTCCTTTCCCCCCCCTTCCACCCTT
ACGGCAGGTGGTGAAGCAGCGCATGCAAGCGGGCGTGGAGCAAACCTGGC
GCGAAGCCGTGACAAATATCATGGCGTCCTCGGGGCCCAGGGGATTCTTC
GCCGGCTGGTCGGCGTTGGCGTTGCGTGACCTGCCCTTTGACATCATCGA
GTTTCCCCTGTATGAGGCACTCAAGGCGCGGTGGGCAGCCAAGAAAGGCC
GGCCGCTCGAGACGTGGGAGGCGAGCGTGTGCGGGTCCCTGGCCGGTGGC
TTGGCGGCGGGGCTCACAACGCCGCTGGACGTAGTCAAGACGCGCCTGAT
GACACAACGGGCGGGGCAGCATGCCTACACGGGCCTGCTGGACTGTCTAT
GCCGCGTGGCTAAGGAGGAAGGTGTAAGTGCGCTCTACCGTGGGCTTGTG
CCCCGTGTAGTTAACATCGCTTTGGGCGGCGCCATCTTCTTCGGTGCCTA
CGAGGCATTCAAACAGGTGGCTGACCGAGCGCTCGTGCAGAAGGACCTGG
ACTTGGTCGAGTGGTGGGCCGGGGTCAAGGCAAAGGCAGGCGAAATGCGC
AAACGGCAATTCTCAAAGGGTGTGGGCGGCAGCCTGGCCAAGAAGGGGGG
CTTCGTGCCGATGGCCGCCGTGGTAGGGCCGCGGACAGGAAAGAGTCGGA
CGGCACGCGCGGTGGGGGTGTGTGAATGAGGAAGTGCAGGAGTTGGGGAA
GGTTTCTTGCGATTGCGCGGTGGCGACTTATTTCCTTGTATGGGTGGTGT
GGAAGGAGGGGGGGAAAGCGAGACGGCAAGATTGAAGAGGAGAAGGCGGA
TGTCAGATGAGAGGGGCACGCAAAGCATATTGAGTTATGTGTTGCTTCGG
GGAGTTGGGGTCAGGGTGCGCGGACGAAAGACGCCCACACCCTCTCCTAG
GTAACGTGCACATGCTCCGCCATCTGGACGGAGATGGAAGTAAATTCCGT
CAACAATGGGAACACACACCAAGAAAAACAAAAGCATATGAGAGATGAAA
ACTCTACTAACTATTGTTAAAACACTCGCGGTCAGTCAACTTCGTGGGAT
AATCATTCTTGTCGAGTGACAAATAAAATGGGTTGTTCTTGGCTTGTGCG
AGGTTGAAACTACACAGGGAAAAGAGTCTTCCAGCCTTTGCTCACAGCTT
ATATCTTGGTAGCCGATATTAAGCAACCTTTTGGCACATCTGAATAATAT
GTGCGACAAGTGCATCAAAAATGTTGATTCGGAGAGATTGGAATCTGTAC
GGCACGTAAGGAC

Coding sequence (CDS) from alignment at scaffold_31:55818..58430+

>mRNA_9608 ID=mRNA_9608|Name=jgi.p|Nanoce1779_2|546857|organism=Nannochloropsis oceanica|type=CDS|length=3861bp|location=Sequence derived from alignment at scaffold_31:55818..58430+ (Nannochloropsis oceanica)
ATGAGGCCAACATCATCACAACCCCTTCAACTACTATTTGCCTGCCTGTG
CTTCCTGGCCCTCCTCCTCCTCCCTCTCCAGGCCACCGCCACCTCTACCG
GGTCAAGCGTCGCCGCTGTCACGACCAAGAGTAGCGGCAGCTGCAGCATT
AGCAGTGATAACAAGAAGAAGTCGGCCCTCGATCGCCTCCGCCGCATCTC
TGGCGGCGGAGGTTCATCTGCCCCCACGCCGAGTGCCAGCGTCTCCGGCA
CTCGCGGTCCGGACGGGAAGATCATCGCCACGCCAGGCCAGGCCTTTCTG
ACAGGGCTATTGTCAGGGGCCGTGGCTGGTATCACGGTGGACCTGACCCT
CTTCCCGCTGGACACGATCAAGACCCGGCTGCAAGCAAGTGCCAACACCA
GGTTCTCTCTAGAACTGCTCAAGGGCATGTATGATGGGGTGGGTCCAGGC
CTCTTGGCCTCCGCCCCGGCCTGCGCTGCTTTCTTTGGAGCCTATGACAG
CTTCAAGCGCAGTCTCACCGCCCGCTTTCCCGACCCCAAGCTCGCTCCCA
TCGTCAACATGCTGGCGGCTGCAGGAGGCGACCTCACGCAGAGTGTGGTC
CGTGTGCCTTTTGAGGTGGTGAAGCAGCGCATGCAAGCGGGCGTGGAGCA
AACCTGGCGCGAAGCCGTGACAAATATCATGGCGTCCTCGGGGCCCAGGG
GATTCTTCGCCGGCTGGTCGGCGTTGGCGTTGCGTGACCTGCCCTTTGAC
ATCATCGAGTTTCCCCTGTATGAGGCACTCAAGGCGCGGTGGGCAGCCAA
GAAAGGCCGGCCGCTCGAGACGTGGGAGGCGAGCGTGTGCGGGTCCCTGG
CCGGTGGCTTGGCGGCGGGGCTCACAACGCCGCTGGACGTAGTCAAGACG
CGCCTGATGACACAACGGGCGGGGCAGCATGCCTACACGGGCCTGCTGGA
CTGTCTATGCCGCGTGGCTAAGGAGGAAGGTGTAAGTGCGCTCTACCGTG
GGCTTGTGCCCCGTGTAGTTAACATCGCTTTGGGCGGCGCCATCTTCTTC
GGTGCCTACGAGGCATTCAAACAGGTGGCTGACCGAGCGCTCGTGCAGAA
GGACCTGGACTTGGTCGAGTGGTGGGCCGGGGTCAAGGCAAAGGCAGGCG
AAATGCGCAAACGGCAATTCTCAAAGGGTGTGGGCGGCAGCCTGGCCAAG
AAGGGGGGCTTCGTGCCGATGGCCGCCGTGGTAGGGCCGCGGACAGGAAA
GAGTCGGACGGCACGCGCGGTGGGGGTGTGTGAATGAATGAGGCCAACAT
CATCACAACCCCTTCAACTACTATTTGCCTGCCTGTGCTTCCTGGCCCTC
CTCCTCCTCCCTCTCCAGGCCACCGCCACCTCTACCGGGTCAAGCGTCGC
CGCTGTCACGACCAAGAGTAGCGGCAGCTGCAGCATTAGCAGTGATAACA
AGAAGAAGTCGGCCCTCGATCGCCTCCGCCGCATCTCTGGCGGCGGAGGT
TCATCTGCCCCCACGCCGAGTGCCAGCGTCTCCGGCACTCGCGGTCCGGA
CGGGAAGATCATCGCCACGCCAGGCCAGGCCTTTCTGACAGGGCTATTGT
CAGGGGCCGTGGCTGGTATCACGGTGGACCTGACCCTCTTCCCGCTGGAC
ACGATCAAGACCCGGCTGCAAGCAAGTGCCAACACCAGGTTCTCTCTAGA
ACTGCTCAAGGGCATGTATGATGGGGTGGGTCCAGGCCTCTTGGCCTCCG
CCCCGGCCTGCGCTGCTTTCTTTGGAGCCTATGACAGCTTCAAGCGCAGT
CTCACCGCCCGCTTTCCCGACCCCAAGCTCGCTCCCATCGTCAACATGCT
GGCGGCTGCAGGAGGCGACCTCACGCAGAGTGTGGTCCGTGTGCCTTTTG
AGGTGGTGAAGCAGCGCATGCAAGCGGGCGTGGAGCAAACCTGGCGCGAA
GCCGTGACAAATATCATGGCGTCCTCGGGGCCCAGGGGATTCTTCGCCGG
CTGGTCGGCGTTGGCGTTGCGTGACCTGCCCTTTGACATCATCGAGTTTC
CCCTGTATGAGGCACTCAAGGCGCGGTGGGCAGCCAAGAAAGGCCGGCCG
CTCGAGACGTGGGAGGCGAGCGTGTGCGGGTCCCTGGCCGGTGGCTTGGC
GGCGGGGCTCACAACGCCGCTGGACGTAGTCAAGACGCGCCTGATGACAC
AACGGGCGGGGCAGCATGCCTACACGGGCCTGCTGGACTGTCTATGCCGC
GTGGCTAAGGAGGAAGGTGTAAGTGCGCTCTACCGTGGGCTTGTGCCCCG
TGTAGTTAACATCGCTTTGGGCGGCGCCATCTTCTTCGGTGCCTACGAGG
CATTCAAACAGGTGGCTGACCGAGCGCTCGTGCAGAAGGACCTGGACTTG
GTCGAGTGGTGGGCCGGGGTCAAGGCAAAGGCAGGCGAAATGCGCAAACG
GCAATTCTCAAAGGGTGTGGGCGGCAGCCTGGCCAAGAAGGGGGGCTTCG
TGCCGATGGCCGCCGTGGTAGGGCCGCGGACAGGAAAGAGTCGGACGGCA
CGCGCGGTGGGGGTGTGTGAATGAATGAGGCCAACATCATCACAACCCCT
TCAACTACTATTTGCCTGCCTGTGCTTCCTGGCCCTCCTCCTCCTCCCTC
TCCAGGCCACCGCCACCTCTACCGGGTCAAGCGTCGCCGCTGTCACGACC
AAGAGTAGCGGCAGCTGCAGCATTAGCAGTGATAACAAGAAGAAGTCGGC
CCTCGATCGCCTCCGCCGCATCTCTGGCGGCGGAGGTTCATCTGCCCCCA
CGCCGAGTGCCAGCGTCTCCGGCACTCGCGGTCCGGACGGGAAGATCATC
GCCACGCCAGGCCAGGCCTTTCTGACAGGGCTATTGTCAGGGGCCGTGGC
TGGTATCACGGTGGACCTGACCCTCTTCCCGCTGGACACGATCAAGACCC
GGCTGCAAGCAAGTGCCAACACCAGGTTCTCTCTAGAACTGCTCAAGGGC
ATGTATGATGGGGTGGGTCCAGGCCTCTTGGCCTCCGCCCCGGCCTGCGC
TGCTTTCTTTGGAGCCTATGACAGCTTCAAGCGCAGTCTCACCGCCCGCT
TTCCCGACCCCAAGCTCGCTCCCATCGTCAACATGCTGGCGGCTGCAGGA
GGCGACCTCACGCAGAGTGTGGTCCGTGTGCCTTTTGAGGTGGTGAAGCA
GCGCATGCAAGCGGGCGTGGAGCAAACCTGGCGCGAAGCCGTGACAAATA
TCATGGCGTCCTCGGGGCCCAGGGGATTCTTCGCCGGCTGGTCGGCGTTG
GCGTTGCGTGACCTGCCCTTTGACATCATCGAGTTTCCCCTGTATGAGGC
ACTCAAGGCGCGGTGGGCAGCCAAGAAAGGCCGGCCGCTCGAGACGTGGG
AGGCGAGCGTGTGCGGGTCCCTGGCCGGTGGCTTGGCGGCGGGGCTCACA
ACGCCGCTGGACGTAGTCAAGACGCGCCTGATGACACAACGGGCGGGGCA
GCATGCCTACACGGGCCTGCTGGACTGTCTATGCCGCGTGGCTAAGGAGG
AAGGTGTAAGTGCGCTCTACCGTGGGCTTGTGCCCCGTGTAGTTAACATC
GCTTTGGGCGGCGCCATCTTCTTCGGTGCCTACGAGGCATTCAAACAGGT
GGCTGACCGAGCGCTCGTGCAGAAGGACCTGGACTTGGTCGAGTGGTGGG
CCGGGGTCAAGGCAAAGGCAGGCGAAATGCGCAAACGGCAATTCTCAAAG
GGTGTGGGCGGCAGCCTGGCCAAGAAGGGGGGCTTCGTGCCGATGGCCGC
CGTGGTAGGGCCGCGGACAGGAAAGAGTCGGACGGCACGCGCGGTGGGGG
TGTGTGAATGA

Synonyms

Publications