jgi.p|Nanoce1779_2|605116, mRNA_9607 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605116
Unique NamemRNA_9607
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length844
Alignment locationscaffold_31:53986..55374 +

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Properties
Property NameValue
TranscriptId605202
TrackFilteredModels2
ProteinId605116
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:53986..55374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605116gene_9607Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605116mRNA_9607-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9607CDS_9607Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9607 ID=mRNA_9607|Name=jgi.p|Nanoce1779_2|605116|organism=Nannochloropsis oceanica|type=mRNA|length=844bp
ACAGTTTGGTGCTTTTGCCAAAAAAGCTTGGGTCCGGACGCACGATCTTT
CTCGTCGTCCTTAATTTGATTCAAGAGAGGAAAGCCAGTCTTCTTCATCC
CCCACCCCTTCTGGAACCATGCGTCACTTGGCCACCTATCTGCTCCTGAA
GCTGGGCGGCAACGACAGCCCGTCTGCCAGCGATGTGAGCACGGCCCTTT
CCGCCGTGGGCGTGGAGACTGATGAGGCCCGTCTGTCTACGCTGATCACG
GAGCTTGAAGGCAAGGATGTGGACACCCTCATCAAGGAGGGCTCCGAGTT
GCTGGCTACTTTCGGTGGAGGTGGTGGTGCTGGGCCGGCGGCAGCGGCAC
CCGCTGAGGCGGCTGCGGCTGGGGCTGCCGAGAAGAAGGAGAAGAAAGAG
GAGAAGGAGGAAGAAGCGGACTTGGGCGGAGGCATGGACATGTTCGGGGG
CGGCGGCGATGGGTACTAAGCCAGTCTTTAACCTTATTGTCAAGTTCTTA
TTGGCCGCAGCAGGTGAACATGCAGTTGTCGTCGTCTACAAAAACTCTCG
TCACGCTCCATCGTCGCATTCATCCTTCTTTCCGCATGGCTTATTTTTTT
GGCAAGGAGGCACCCTTCTCTCACACTTCCCCCCTCACTTTTCCTTATGT
CTTTTTGTTGTCGTTGCCCCGTCTCTTGTAAGCTTGGGGTTATAACCAGG
TGAGATCGAGGAGTATGGAAGAAGCGATCTGTAGGAGAAGCAGTGAAGGG
TGAGAAGGGGGAGTGTTGGTAAGTGAGTTGCCTTGCTCTGCGAAAAGAAA
AAGAATGGACCCTAAAAACGAAACCACAACCACCAATAGATGCT
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protein sequence of jgi.p|Nanoce1779_2|605116

>mRNA_9607-protein ID=mRNA_9607-protein|Name=jgi.p|Nanoce1779_2|605116|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MRHLATYLLLKLGGNDSPSASDVSTALSAVGVETDEARLSTLITELEGKD
VDTLIKEGSELLATFGGGGGAGPAAAAPAEAAAAGAAEKKEKKEEKEEEA
DLGGGMDMFGGGGDGY*
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mRNA from alignment at scaffold_31:53986..55374+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9607 ID=mRNA_9607|Name=jgi.p|Nanoce1779_2|605116|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp|location=Sequence derived from alignment at scaffold_31:53986..55374+ (Nannochloropsis oceanica)
ACAGTTTGGTGCTTTTGCCAAAAAAGCTTGGGTCCGGACGCACGATCTTT
CTCGTCGTCCTTAATTTGATTCAAGGTACGTGTGACTGAATAGAGGACAA
GAGGTGTGGGTGTGAAGGAGGCAGATGAGCGCAGGAGTCGGCACGATAGA
TGTGAGACGGTACCGCAGGCAATGAGGGGCAAAACGCAACGGTGACCAGA
TGGTGTACTGCTGCTGACGCTGCTGGTCAATGTGGTGCGGCTGCTGATGG
CCCTGTCGAGAGCATTGAACGACGCCGCTCTCGCTCCGATAGCCCTCCTC
CTTTCCCTCCACGCCCTCCCTGACACACACTCATCGTCTTTCCTTCGTAT
CACTTTCCTCCCCATTCACATTCACACAGAGAGGAAAGCCAGTCTTCTTC
ATCCCCCACCCCTTCTGGAACCATGCGTCACTTGGCCACCTATCTGCTCC
TGAAGCTGGGCGGCAACGACAGCCCGTCTGCCAGCGATGTGAGCACGGCC
CTTTCCGCCGTGGGCGTGGAGACTGATGAGGCCCGTCTGTCTACGCTGAT
CACGGAGCTTGAAGGCAAGGATGTGGACACCCTCATCAAGGAGGGCTCCG
AGTTGCTGGCTACTTTCGGTGGAGGTGGTGGTGCTGGGCCGGCGGCAGCG
GCACCCGCTGAGGCGGCTGCGGCTGGGGCTGCCGAGAAGAAGGAGAAGAA
AGAGGAGAAGGAGGAAGAAGCGGACTTGGGCGGAGGCATGGACATGTTCG
GGGTGAGTGAGGGCGGAAAGATTTGAAGGGGGAAGAGAGGGAGAGAAGGG
GGGAACGAGGGAGGGAGAGATCGAGGGACATATCTTGCGTTCTACGATGA
AGCAGGTGAAATTGCGAGTGGGAGATATTGAAAGTATCAGTGTGTCTTCC
TTTTGTCAAGCATCTGTGTCTTTGCTCTATGTGACAGCACGTTGGATTTT
CATCTCGTTCTCCCCTTTCCCCCCTACGCTCCACCACCAACAGGGCGGCG
GCGATGGGTACTAAGCCAGTCTTTAACCTTATTGTCAAGTTCTTATTGGC
CGCAGCAGGTGAACATGCAGTTGTCGTCGTCTACAAAAACTCTCGTCACG
CTCCATCGTCGCATTCATCCTTCTTTCCGCATGGCTTATTTTTTTGGCAA
GGAGGCACCCTTCTCTCACACTTCCCCCCTCACTTTTCCTTATGTCTTTT
TGTTGTCGTTGCCCCGTCTCTTGTAAGCTTGGGGTTATAACCAGGTGAGA
TCGAGGAGTATGGAAGAAGCGATCTGTAGGAGAAGCAGTGAAGGGTGAGA
AGGGGGAGTGTTGGTAAGTGAGTTGCCTTGCTCTGCGAAAAGAAAAAGAA
TGGACCCTAAAAACGAAACCACAACCACCAATAGATGCT
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Coding sequence (CDS) from alignment at scaffold_31:53986..55374+

>mRNA_9607 ID=mRNA_9607|Name=jgi.p|Nanoce1779_2|605116|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_31:53986..55374+ (Nannochloropsis oceanica)
ATGCGTCACTTGGCCACCTATCTGCTCCTGAAGCTGGGCGGCAACGACAG
CCCGTCTGCCAGCGATGTGAGCACGGCCCTTTCCGCCGTGGGCGTGGAGA
CTGATGAGGCCCGTCTGTCTACGCTGATCACGGAGCTTGAAGGCAAGGAT
GTGGACACCCTCATCAAGGAGGGCTCCGAGTTGCTGGCTACTTTCGGTGG
AGGTGGTGGTGCTGGGCCGGCGGCAGCGGCACCCGCTGAGGCGGCTGCGG
CTGGGGCTGCCGAGAAGAAGGAGAAGAAAGAGGAGAAGGAGGAAGAAGCG
GACTTGGGCGGAGGCATGGACATGTTCGGGGGCGGCGGCGATGGGTACTA
AATGCGTCACTTGGCCACCTATCTGCTCCTGAAGCTGGGCGGCAACGACA
GCCCGTCTGCCAGCGATGTGAGCACGGCCCTTTCCGCCGTGGGCGTGGAG
ACTGATGAGGCCCGTCTGTCTACGCTGATCACGGAGCTTGAAGGCAAGGA
TGTGGACACCCTCATCAAGGAGGGCTCCGAGTTGCTGGCTACTTTCGGTG
GAGGTGGTGGTGCTGGGCCGGCGGCAGCGGCACCCGCTGAGGCGGCTGCG
GCTGGGGCTGCCGAGAAGAAGGAGAAGAAAGAGGAGAAGGAGGAAGAAGC
GGACTTGGGCGGAGGCATGGACATGTTCGGGGGCGGCGGCGATGGGTACT
AA
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Synonyms
Publications