jgi.p|Nanoce1779_2|605099, mRNA_9603 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605099
Unique NamemRNA_9603
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length890
Alignment locationscaffold_31:43274..44417 +

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Properties
Property NameValue
TranscriptId605185
TrackFilteredModels2
ProteinId605099
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:43274..44417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605099gene_9603Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605099mRNA_9603-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9603CDS_9603Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9603 ID=mRNA_9603|Name=jgi.p|Nanoce1779_2|605099|organism=Nannochloropsis oceanica|type=mRNA|length=890bp
CCCCTCCTCCCCCTCCTCCTTCCCCTCCTCCTTCTCCTGGACAGGGCCAT
GCCTGCTCAGATATCGAGGATGTGGAGAGGGAGGGATGGAGGAAGGGTAT
ACCACCTCTGCTGCTGCTCGTGGTGCTGCTGCCCCTTGTCGAGTGCGTGG
CTGTGAGGTTGCCCTGGGGCCAGTCCCCCAGCCCGACTCTCAAAATGCTG
GAAGGAAAGGACGATGAGACGGCAGCGGAAAGGTGGGGTGGAGGAAGCGA
GGGAGGAAGTACGGTATCGTCATGCCAGCCGAGCTGAAACGCGTGCCTTC
CGCTGCCGCTGCTGCTACTGTTACTGCTACCACTGTACAAGCCTCCTTCG
CCTCCTTCGCCTCCTCCTTTTCTTCCCCCGCCGGCAAAGGCATCTCCGCC
TCGAGAGGACGAATAACGCCCACTCACGTTTCCCATGCCATCCCTGCCGC
TGCCACCCACTAAAGGAGGCACGCTGCTACTCCGGCTTGGTATGCTAAAT
GATGGCTGGTCTAAGGTTTCCCAAAATCCACTGTATCCAAGTTCTCGTCC
TCGGCCGCGTCCTGCTCCCCCTTCCTCTAGCTGCTCCTGACCCCTCTGCC
CTTGCTGCCGCCCCCCCTCCGACGGCTGTGATTGCTGCTCTCCGTCCATC
CTTGTTGCCTCTGTGCCCTAGTACCCTTATATTTCGTCCAACCAATAAAT
TTCCCGCGCCTTGCCCCGCCCCTCTCCCTCTCTTATTGAGAGAGCCCCCT
CAAGGGGGGGGAGGGAGGAGGCGACCTTGGCAACTACGACGGATTCAGGG
AAGTTTGAGGGGATCGATGTAACGACGGGCAACCGGCAAAGCCCGGCTGG
TGGACGCGGCTATGCAAGAAAATGCATGTATGAAACCTGT
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protein sequence of jgi.p|Nanoce1779_2|605099

>mRNA_9603-protein ID=mRNA_9603-protein|Name=jgi.p|Nanoce1779_2|605099|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MMAGLRFPKIHCIQVLVLGRVLLPLPLAAPDPSALAAAPPPTAVIAALRP
SLLPLCPSTLIFRPTNKFPAPCPAPLPLLLREPPQGGGGRRRPWQLRRIQ
GSLRGSM*
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mRNA from alignment at scaffold_31:43274..44417+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9603 ID=mRNA_9603|Name=jgi.p|Nanoce1779_2|605099|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp|location=Sequence derived from alignment at scaffold_31:43274..44417+ (Nannochloropsis oceanica)
CCCCTCCTCCCCCTCCTCCTTCCCCTCCTCCTTCTCCTGGACAGGGCCAT
GCCTGCTCAGATATCGAGGATGTGGAGAGGGAGGGATGGAGGAAGGGTAT
ACCACCTCTGCTGCTGCTCGTGGTGCTGCTGCCCCTTGTCGAGTGCGTGG
CTGTGAGGTTGCCCTGGGGCCAGTCCCCCAGCCCGACTCTCAAAATGCTG
GAAGGAAAGGACGATGAGACGGCAGCGGAAAGGTGGGGTGGAGGAAGCGA
GGGAGGAAGTACGGTATCGTCATGCCAGCCGAGCTTTAAAAGAGGGAGGG
AGGGAGGGAGGGAAGGAAGGAAAGAGGAAGGTGGGAAGAAATGTGGTGGA
CAATGAGTGCTCCTAGATGGCTCTCATCTAACTCCTGGAAGACAAGCATC
TCCTTACCTGAAACGCGTGCCTTCCGCTGCCGCTGCTGCTACTGTTACTG
CTACCACTGTACAAGCCTCCTTCGCCTCCTTCGCCTCCTCCTTTTCTTCC
CCCGCCGGCAAAGGCATCTCCGCCTCGAGAGGACGAATAACGCCCACTCA
CGTTTCCCATGCCATCCCTATGCCGGGGATATATATATATACAAATTGGT
GGATAAAGATTCTACAGACAGTCATTCCCTCCATCTGCAGTCTCCCCATA
CGCATTTCAAATAAATGTCTACGTACACTTCCCTTCCTTCTTCATACCTG
CCGCTGCCACCCACTAAAGGAGGCACGCTGCTACTCCGGCTTGGTATGCT
AAATGATGGCTGGTCTAAGGTTTCCCAAAATCCACTGTATCCAAGTTCTC
GTCCTCGGCCGCGTCCTGCTCCCCCTTCCTCTAGCTGCTCCTGACCCCTC
TGCCCTTGCTGCCGCCCCCCCTCCGACGGCTGTGATTGCTGCTCTCCGTC
CATCCTTGTTGCCTCTGTGCCCTAGTACCCTTATATTTCGTCCAACCAAT
AAATTTCCCGCGCCTTGCCCCGCCCCTCTCCCTCTCTTATTGAGAGAGCC
CCCTCAAGGGGGGGGAGGGAGGAGGCGACCTTGGCAACTACGACGGATTC
AGGGAAGTTTGAGGGGATCGATGTAACGACGGGCAACCGGCAAAGCCCGG
CTGGTGGACGCGGCTATGCAAGAAAATGCATGTATGAAACCTGT
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Coding sequence (CDS) from alignment at scaffold_31:43274..44417+

>mRNA_9603 ID=mRNA_9603|Name=jgi.p|Nanoce1779_2|605099|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_31:43274..44417+ (Nannochloropsis oceanica)
ATGATGGCTGGTCTAAGGTTTCCCAAAATCCACTGTATCCAAGTTCTCGT
CCTCGGCCGCGTCCTGCTCCCCCTTCCTCTAGCTGCTCCTGACCCCTCTG
CCCTTGCTGCCGCCCCCCCTCCGACGGCTGTGATTGCTGCTCTCCGTCCA
TCCTTGTTGCCTCTGTGCCCTAGTACCCTTATATTTCGTCCAACCAATAA
ATTTCCCGCGCCTTGCCCCGCCCCTCTCCCTCTCTTATTGAGAGAGCCCC
CTCAAGGGGGGGGAGGGAGGAGGCGACCTTGGCAACTACGACGGATTCAG
GGAAGTTTGAGGGGATCGATGTAA
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Synonyms
Publications