jgi.p|Nanoce1779_2|574803, mRNA_960 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574803
Unique Name	mRNA_960
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2842
Alignment location	scaffold_2:857500..860608 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574889
Track	FilteredModels2
ProteinId	574803

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:857500..860608 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574803	gene_960	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574803	mRNA_960-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_960	CDS_960	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:857500..860608-
coding sequence from alignment at scaffold_2:857500..860608-

mRNA sequence

>mRNA_960 ID=mRNA_960|Name=jgi.p|Nanoce1779_2|574803|organism=Nannochloropsis oceanica|type=mRNA|length=2842bp
AGGGAGGGGCTGACCCGGGGGCAGATGCTACGTTGTTGCCTGTTTTAGTC
AAAGCGCTGGCGGCTTTGGGTGAGGAAGGTCTGAGCATGACCTCTGAGCA
GGGGGGCTTGATCGCAAAACAGTTGCTGAAGATGAAGGGGACGGGGTCGG
CGAAAGGCGCGTATAAAGTGTTGACGGCGTTGCAGACCCTAGTGGGCTCA
TTCGCTGATGCCGCGCCTGTGGCTGTTGTGCTGTCAATGCCCGTCATCAA
GGTGGGGGATGGGCTGAAAGTTGATGTTCGGACTCTGTTGGGGAAGCCGG
CGGAGGGGACATACGGAAATGTGGAGGTGGAGAAGGTGGGAGTGGGGGCG
GCACAGGAGGTTGAGTCGATGGCGGGCCAGGTGCTCAAGACTTCGGGGCG
CAGTGGAACGTTTGAAGGGACTACGGCTGGTTTGGAGATGGGGTTGTACG
ATGTGGTGTTGAAGGTAGGGGAGAAGCTGGAGGGGGTCAAGCGATCGTTG
GTTGTACAGGGTGAAGCCAAGTTGACTAATGTGGAGGTGGGCGTGTCCCC
AACTCGTGCTCATTCGGATGGGAGGATTTACCCGGCTCCTTTGAGGGCAG
GGGAGGTGAAGGCATCTTCGGTGGAAGGGGAGTATATTTCAGCTTCGTTT
ACTGTGGAATCGACCATGGCTCCTCAGCAGGCGTTTTTGAAGCTTACCCA
TTTAGACACTGGTTCCGAGGCGATATACGCAGCAAAGCGTGGGGGGGGGA
CCGCGGATGCTTGGGCGTTTATCGCAGTTGTAAGCCTTGTGGACGACGTT
GAATTTGTCTTTGGGCACCGTTCGGGGGAGTATCAACTTTCTCTCTTAGT
AGGGGACGTGAGTCTAGAGATGCCTTCGGAGCAAGACCTGGGTACGATGA
GCTTGGCTTTCCCCCCCAAGCCCAAAGCGCACTATGCCCTGTATCGCAAG
CCTCTCCAGTGGGACTCTGACACGGCTCTTGCTCCTCTTCCAGAGATTTA
CCATCAATTCCGCCGACCTGAAAAACGACCCAATCCTGTCTTGCCCGCCG
CATTTACCACTCTCATCGCGCTTGCCCTGGCAATGTTCCTCATTTATCTT
CCCCGTGTGGGTGCTAACTTGGATGGGCTTCCCTCGGCAGGAGCAGCCTT
GGTGTGGAATGTGGCATGGGTGGGTTGTTTGTGCGCCGTGATACTGTTGT
TTACTGCCTACTGGGTGCACCTAAAGGGCATGACGACGTTAAAATTGTTG
TTGCCATTGGGGTTGACCACGGTATTGGTGGGGCACCGGGCGTTTGTCAG
TAAGAATTTGGCTTTTTCTTCTGCGACGCCGGGTAATTAAATGAGCGATT
GGCAGTTGGCGGAATAGGGAGGTGGAGGACGTAGGGAGGGATGGAATGAA
CGGGGAGTGTGAGCAATGTGAGTTTAGTGAGAGAAGGTAGTGAAAGAGGT
AAGTTAGATTGTGGATTGGTAGGAGAAGGGGGAGGCGGAGGAGGTGGCCC
CTATCTCGGAACAGCGAAAAAGGACAGAAGGGATGGGAACAGCGAAAAGA
GACAGAAGGGGATGAGGAAAGTTGAGGCCAAGGCTGGCAGTAGGGCTAGG
GGGGAAAAAATAAAAAGGAACAGAGAGGAAAGAAATTTCCAAGAGACATG
ACAGAGAGCGAAAGACCATGTCTACGTATTCTCGCACAATGGGCGCAGGA
TTGTTACATTATTATGGAGGAAATCCTCGCTATTTCTCTCAGATTGTTCG
GCATTTTCCCTTCTGTCTTTCCTTCCTTCGGGCCGGGCGATCGGAAGTGG
GGATTTGCTTATGATGATTGAAGTGCTTCGTACTGTTAGAACAATATAAA
TACACAGATTTCTACTTTCGCTAAGATGTACAGTATTTTTCCCGACATTT
GGATTATTCCTGGTCTGCTTGCTTGCCTCACCGCGTCTTCCTTCACCACT
CTCCCTCTCTGTACCCGTGCGCCCTTCATCCCTCTTCGTTTCTCTCGCAC
GGAGCCATGCGCCTTTACTCTTGCTCTGTGTTCTCACCATCTTAAGCCTT
CTAAGACATCAGCCGTACCATTCTCAGCATCAGCTGATTCCTCTCATCAG
TATACGAGCCTCCAACCACTTCAAATCCACCCTGGCTTCGCAGCTTCTCT
CCCCAGAACGGTAACATCTTCTCCGGAAGTGTCACAGCCACCGCACCAAT
CGTCCATCCTTGTGGTTGCATCTCTCGAGCCATGCAATCTACATCCTCCA
ACAAAAACTTGAGTGTATGAGAGGAAAAACCCCTCCCACGGTACGGCTCC
AACACTGCCAATCGGTCAATTACTGCTATAGAGCACCCCCCTCCACTGCC
TTTCCCCTGCTGTTGTCCACCTCCACTTCCCCCTTCTCCGAATTCAACCC
TCCACCGTGCACAGAGGACGGGGGCATCCCCCACAAGGCCAAGCACATGG
CGGCTGCTTCGATCGTTGACGTCAAATTCTAATTCTGCGGCAATCCGGCC
TTCCTCGACAAAGACCCGGTTCCGCACTATCCTTGCCAAGGCCCACAAGC
TCTTGAATGCCTGGGCTTCATGCCGTTGGTCGAAGCTTTCAAAGTGCAGC
GTCGCGCAGGACGGGGCGGTCGTCTTGGCTACGAGAAGGTACGTTTTTCC
CTTGCCGCGGTGCCCACACACCGGGCACTTTTGCGCCGGGTGGTGTGCAT
GCGTACAGGATGGACAGATAGGGGGCGGGCCATTGAGCTCCATGCGTTTT
CGTGTCGTAAAAGCGGGCGCCAAAATAATCGGCACAGCCAAGACCTTGCG
GACGTCGTGACGGTCGTCGTGTAAGGCCAAGACAGCTCCTGT

protein sequence of jgi.p|Nanoce1779_2|574803

>mRNA_960-protein ID=mRNA_960-protein|Name=jgi.p|Nanoce1779_2|574803|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MTSEQGGLIAKQLLKMKGTGSAKGAYKVLTALQTLVGSFADAAPVAVVLS
MPVIKVGDGLKVDVRTLLGKPAEGTYGNVEVEKVGVGAAQEVESMAGQVL
KTSGRSGTFEGTTAGLEMGLYDVVLKVGEKLEGVKRSLVVQGEAKLTNVE
VGVSPTRAHSDGRIYPAPLRAGEVKASSVEGEYISASFTVESTMAPQQAF
LKLTHLDTGSEAIYAAKRGGGTADAWAFIAVVSLVDDVEFVFGHRSGEYQ
LSLLVGDVSLEMPSEQDLGTMSLAFPPKPKAHYALYRKPLQWDSDTALAP
LPEIYHQFRRPEKRPNPVLPAAFTTLIALALAMFLIYLPRVGANLDGLPS
AGAALVWNVAWVGCLCAVILLFTAYWVHLKGMTTLKLLLPLGLTTVLVGH
RAFVSKNLAFSSATPG

mRNA from alignment at scaffold_2:857500..860608-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_960 ID=mRNA_960|Name=jgi.p|Nanoce1779_2|574803|organism=Nannochloropsis oceanica|type=mRNA|length=3109bp|location=Sequence derived from alignment at scaffold_2:857500..860608- (Nannochloropsis oceanica)
AGGGAGGGGCTGACCCGGGGGCAGATGCTACGTTGTTGCCTGTTTTAGTC
AAAGCGCTGGCGGCTTTGGGTGAGGAAGGTCTGAGCATGACCTCTGAGCA
GGGGGGCTTGATCGCAAAACAGTTGCTGAAGATGAAGGGGACGGGGTCGG
CGAAAGGCGCGTATAAAGTGTTGACGGCGTTGCAGACCCTAGTGGGCTCA
TTCGCTGATGCCGCGCCTGTGGCTGTTGTGCTGTCAATGCCCGTCATCAA
GGTGGGGGATGGGCTGAAAGTTGATGTTCGGACTCTGTTGGGGAAGCCGG
CGGAGGGGACATACGGAAATGTGGAGGTGGAGAAGGTGGGAGTGGGGGCG
GCACAGGAGGTTGAGTCGATGGCGGGCCAGGTGCTCAAGACTTCGGGGCG
CAGTGGAACGTTTGAAGGGACTACGGCTGGTTTGGAGATGGGGTTGTACG
ATGTGGTGTTGAAGGTAGGGGAGAAGCTGGAGGGGGTCAAGCGATCGTTG
GTTGTACAGGGTGAAGCCAAGTTGACTAATGTGGAGGTGGGCGTGTCCCC
AACTCGTGCTCATTCGGATGGGAGGATTTACCCGGCTCCTTTGAGGGCAG
GGGAGGTGAAGGCATCTTCGGTGGAAGGGGAGTATATTTCAGCTTCGTTT
ACTGTGGAATCGACCATGGCTCCTCAGCAGGCGTTTTTGAAGCTTACCCA
TTTAGACACTGGTTCCGAGGCGATATACGCAGCAAAGCGTGGGGGGGGGA
CCGCGGATGCTTGGGCGTTTATCGCAGTTGTAAGCCTTGTGGACGACGTT
GAATTTGTCTTTGGGCACCGTTCGGGGGAGTATCAACTTTCTCTCTTAGT
AGGGGACGTGAGTCTAGAGATGCCTTCGGAGCAAGACCTGGGTACGATGA
GCTTGGCTTTCCCCCCCAAGCCCAAAGCGCACTATGCCCTGTATCGCAAG
CCTCTCCAGTGGGACTCTGACACGGCTCTTGCTCCTCTTCCAGAGATTTA
CCATCAATTCCGCCGACCTGAAAAACGACCCAATCCTGTCTTGCCCGCCG
CATTTACCACTCTCATCGCGCTTGCCCTGGCAATGTTCCTCATTTATCTT
CCCCGTGTGGGTGCTAACTTGGATGGGCTTCCCTCGGCAGGAGCAGCCTT
GGTGTGGAATGTGGCATGGGTGGGTTGTTTGTGCGCCGTGATACTGTTGT
TTACTGCCTACTGGGTGCACCTAAAGGGCATGACGACGTTAAAATTGTTG
TTGCCATTGGGGTTGACCACGGTATTGGTGGGGCACCGGGCGTTTGTCAG
TAAGAATTTGGCTTTTTCTTCTGCGACGCCGGGTAATTAAATGAGCGATT
GGCAGTTGGCGGAATAGGGAGGTGGAGGACGTAGGGAGGGATGGAATGAA
CGGGGAGTGTGAGCAATGTGAGTTTAGTGAGAGAAGGTAGTGAAAGAGGT
AAGTTAGATTGTGGATTGGTAGGAGAAGGGGGAGGCGGAGGAGGTGGCCC
CTATCTCGGAACAGCGAAAAAGGACAGAAGGGATGGGAACAGCGAAAAGA
GACAGAAGGGGATGAGGAAAGTTGAGGCCAAGGCTGGCAGTAGGGCTAGG
GGGGAAAAAATAAAAAGGAACAGAGAGGAAAGAAATTTCCAAGAGACATG
ACAGAGAGCGAAAGACCATGTCTACGTATTCTCGCACAATGGGCGCAGGA
TTGTTACATTATTATGGAGGAAATCCTCGCTATTTCTCTCAGATTGTTCG
GCATTTTCCCTTCTGTCTTTCCTTCCTTCGGGCCGGGCGATCGGAAGTGG
GGATTTGCTTATGATGATTGAAGTGCTTCGTACTGTTAGAACAATATAAA
TACACAGATTTCTACTTTCGCTAAGATGTACAGTATTTTTCCCGACATTT
GGATTATTCCTGGTCTGCTTGCTTGCCTCACCGCGTCTTCCTTCACCACT
CTCCCTCTCTGTACCCGTGCGCCCTTCATCCCTCTTCGTTTCTCTCGCAC
GGAGCCATGCGCCTTTACTCTTGCTCTGTGTTCTCACCATCTTAAGCCTT
CTAAGACATCAGCCGTACCATTCTCAGCATCAGCTGATTCCTCTCATCAG
TATACGAGCCTCCAACCACTTCAAATCCACCCTGGCTTCGCAGCTTCTCT
CCCCAGAACGGTAACATCTTCTCCGGAAGTGTCACAGCCACCGCACCAAT
CGTCCATCCTTGTGGTTGCATCTCTCGAGCCATGCAATCTACATCCTCCA
ACAAAAACTTGAGTGTATGAGAGGAAAAACCCCTCCCACGGTACGGCTCC
AACACTGCCAATCGGTCAATTACTGCTATAGAGCACCCCCCTCCACTGCC
TTTCCCCTGCTGTTGTCCACCTCCACTTCCCCCTTCTCCGAATTCAACCC
TCCACCGTGCACAGAGGACGGGGGCATCCCCCACAAGGCCAAGCACATGG
CGGCTGCTTCGATCGTTGACGTCAAATTCTAATTCTGCGGCAATCCGGCC
TTCCTCGACAAAGACCCGGTTCCGCACTATCCTTGCCAAGGCCCACAAGC
TCTTGAATGCCTGGGCTTCATGCCGTTGGTCGAAGCTTTCAAAGTGCAGC
GTCGCGCAGGACGGGGCGGTCGTCTTGGCTACGAGAAGGTACGTTTTTCC
CTTGCCGCGGTGCCCACACACCGGGCACTTTTGCGCCTGGACCGATATGG
TAAGTAGGGATTTGTAAGAATGTAAATGATGGGTCACGCAATTTACAGTA
CACGAATAAGAGTGCTTAGCATATAATGTGTACACAAAAGACACACAGAC
AGGCAAACTCCTCCATGAACCGACTTGGAATAACAGATGCGGAGTGGAGG
CAGGCAGTAAAATGGAGGACCAAACGACTTACCGGGTGGTGTGCATGCGT
ACAGGATGGACAGATAGGGGGCGGGCCATTGAGCTCCATGCGTTTTCGTG
TCGTAAAAGCGGGCGCCTGCGTTGGAGTGTGCGCGGAGAGGGTGAGGCCC
AGGACCCGTCGTTGCGTGGAAAGGAGGACTCAATTACCAAAATAATCGGC
ACAGCCAAGACCTTGCGGACGTCGTGACGGTCGTCGTGTAAGGCCAAGAC
AGCTCCTGT

Coding sequence (CDS) from alignment at scaffold_2:857500..860608-

>mRNA_960 ID=mRNA_960|Name=jgi.p|Nanoce1779_2|574803|organism=Nannochloropsis oceanica|type=CDS|length=1250bp|location=Sequence derived from alignment at scaffold_2:857500..860608- (Nannochloropsis oceanica)
ATGACCTCTGAGCAGGGGGGCTTGATCGCAAAACAGTTGCTGAAGATGAA
GGGGACGGGGTCGGCGAAAGGCGCGTATAAAGTGTTGACGGCGTTGCAGA
CCCTAGTGGGCTCATTCGCTGATGCCGCGCCTGTGGCTGTTGTGCTGTCA
ATGCCCGTCATCAAGGTGGGGGATGGGCTGAAAGTTGATGTTCGGACTCT
GTTGGGGAAGCCGGCGGAGGGGACATACGGAAATGTGGAGGTGGAGAAGG
TGGGAGTGGGGGCGGCACAGGAGGTTGAGTCGATGGCGGGCCAGGTGCTC
AAGACTTCGGGGCGCAGTGGAACGTTTGAAGGGACTACGGCTGGTTTGGA
GATGGGGTTGTACGATGTGGTGTTGAAGGTAGGGGAGAAGCTGGAGGGGG
TCAAGCGATCGTTGGTTGTACAGGGTGAAGCCAAGTTGACTAATGTGGAG
GTGGGCGTGTCCCCAACTCGTGCTCATTCGGATGGGAGGATTTACCCGGC
TCCTTTGAGGGCAGGGGAGGTGAAGGCATCTTCGGTGGAAGGGGAGTATA
TTTCAGCTTCGTTTACTGTGGAATCGACCATGGCTCCTCAGCAGGCGTTT
TTGAAGCTTACCCATTTAGACACTGGTTCCGAGGCGATATACGCAGCAAA
GCGTGGGGGGGGGACCGCGGATGCTTGGGCGTTTATCGCAGTTGTAAGCC
TTGTGGACGACGTTGAATTTGTCTTTGGGCACCGTTCGGGGGAGTATCAA
CTTTCTCTCTTAGTAGGGGACGTGAGTCTAGAGATGCCTTCGGAGCAAGA
CCTGGGTACGATGAGCTTGGCTTTCCCCCCCAAGCCCAAAGCGCACTATG
CCCTGTATCGCAAGCCTCTCCAGTGGGACTCTGACACGGCTCTTGCTCCT
CTTCCAGAGATTTACCATCAATTCCGCCGACCTGAAAAACGACCCAATCC
TGTCTTGCCCGCCGCATTTACCACTCTCATCGCGCTTGCCCTGGCAATGT
TCCTCATTTATCTTCCCCGTGTGGGTGCTAACTTGGATGGGCTTCCCTCG
GCAGGAGCAGCCTTGGTGTGGAATGTGGCATGGGTGGGTTGTTTGTGCGC
CGTGATACTGTTGTTTACTGCCTACTGGGTGCACCTAAAGGGCATGACGA
CGTTAAAATTGTTGTTGCCATTGGGGTTGACCACGGTATTGGTGGGGCAC
CGGGCGTTTGTCAGTAAGAATTTGGCTTTTTCTTCTGCGACGCCGGGTAA

Synonyms

Publications