jgi.p|Nanoce1779_2|576209, mRNA_96 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576209
Unique NamemRNA_96
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length847
Alignment locationscaffold_3:264646..265492 -

Link to JBrowse

Properties
Property NameValue
TranscriptId576295
TrackFilteredModels2
ProteinId576209
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:264646..265492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576209gene_96Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576209mRNA_96-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_96CDS_96Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_96 ID=mRNA_96|Name=jgi.p|Nanoce1779_2|576209|organism=Nannochloropsis oceanica|type=mRNA|length=847bp
GTTGTTGTTGATGCTGCTGCTGCTGTTGCTGTTGCTGTTGCTGTAGTTGC
TGCTGTTTGTTTTTGGTGGTGCTGCTGGTAGTTTGGTTTTCTATTTCTCT
TCGGTAGCCCTGATCCACTTTGCTGCTCAGAAGGGTAACGAGCAATTCGC
GCATTTGGGTCTCTTCGTCCTCGACAATAAAGGGTGAGAACGACGGGGAC
GAAGAAGAAATAGAGGAAGAAGGAAAGGGAAGAAGTGTAACTGATGCTGC
TGGAGACACGCGTATGTAACGCCCCTTGTGAGATTTCCATTCGGGTACAC
CTATGTTTTGGCTTGGAGTGTTTCCTCCACTGTCACCGCTGCCGCTGTTG
CTGCTAATGCTAATGCTGCTGCTGCTACTGATGCTCCTGCTGCTGCAATT
ACTGTCGCTTCTGGACAGGAAAGAGGGGAGGGAGGAACTTCGCCACTTGT
GATGCCGAAACAGCAAGTTTTGCCGTAGCTCTGCTAGACCGTCAATGAAA
GCGGATGGATCCTTGTAGCAGCGGGCGAGCTCTTCGCGATGCAGCTTGCC
CTTGCGTGTTTCCTTTTGAGTTGCGTGGCCCGGGTAGGTGGTTGTGTCGT
CGGGAATCGTGCATGCCTTGAGGAAGAGAGACCAAACTTGCCGCCACCGA
CCGTCCTTTCGGATCAAATCGGTGACATGCGCCTCCCAGACTACGGGCTC
CGTGCTCACGGGTGCAGGGGGAGTGGTGGTGGGGTCATGGCTTCTTGGTG
GTATTGACGACGTCGATGGGCCAGCTAGGGTGGAGGGGGCAGCCCGCCCG
TTATGTGTTGTTGTTGCCATTACAGCCTCACCTTTACCCTGTCGTTT
back to top

protein sequence of jgi.p|Nanoce1779_2|576209

>mRNA_96-protein ID=mRNA_96-protein|Name=jgi.p|Nanoce1779_2|576209|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MQLALACFLLSCVARVGGCVVGNRACLEEERPNLPPPTVLSDQIGDMRLP
DYGLRAHGCRGSGGGVMASWWY*
back to top

mRNA from alignment at scaffold_3:264646..265492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_96 ID=mRNA_96|Name=jgi.p|Nanoce1779_2|576209|organism=Nannochloropsis oceanica|type=mRNA|length=847bp|location=Sequence derived from alignment at scaffold_3:264646..265492- (Nannochloropsis oceanica)
GTTGTTGTTGATGCTGCTGCTGCTGTTGCTGTTGCTGTTGCTGTAGTTGC
TGCTGTTTGTTTTTGGTGGTGCTGCTGGTAGTTTGGTTTTCTATTTCTCT
TCGGTAGCCCTGATCCACTTTGCTGCTCAGAAGGGTAACGAGCAATTCGC
GCATTTGGGTCTCTTCGTCCTCGACAATAAAGGGTGAGAACGACGGGGAC
GAAGAAGAAATAGAGGAAGAAGGAAAGGGAAGAAGTGTAACTGATGCTGC
TGGAGACACGCGTATGTAACGCCCCTTGTGAGATTTCCATTCGGGTACAC
CTATGTTTTGGCTTGGAGTGTTTCCTCCACTGTCACCGCTGCCGCTGTTG
CTGCTAATGCTAATGCTGCTGCTGCTACTGATGCTCCTGCTGCTGCAATT
ACTGTCGCTTCTGGACAGGAAAGAGGGGAGGGAGGAACTTCGCCACTTGT
GATGCCGAAACAGCAAGTTTTGCCGTAGCTCTGCTAGACCGTCAATGAAA
GCGGATGGATCCTTGTAGCAGCGGGCGAGCTCTTCGCGATGCAGCTTGCC
CTTGCGTGTTTCCTTTTGAGTTGCGTGGCCCGGGTAGGTGGTTGTGTCGT
CGGGAATCGTGCATGCCTTGAGGAAGAGAGACCAAACTTGCCGCCACCGA
CCGTCCTTTCGGATCAAATCGGTGACATGCGCCTCCCAGACTACGGGCTC
CGTGCTCACGGGTGCAGGGGGAGTGGTGGTGGGGTCATGGCTTCTTGGTG
GTATTGACGACGTCGATGGGCCAGCTAGGGTGGAGGGGGCAGCCCGCCCG
TTATGTGTTGTTGTTGCCATTACAGCCTCACCTTTACCCTGTCGTTT
back to top

Coding sequence (CDS) from alignment at scaffold_3:264646..265492-

>mRNA_96 ID=mRNA_96|Name=jgi.p|Nanoce1779_2|576209|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at scaffold_3:264646..265492- (Nannochloropsis oceanica)
ATGCAGCTTGCCCTTGCGTGTTTCCTTTTGAGTTGCGTGGCCCGGGTAGG
TGGTTGTGTCGTCGGGAATCGTGCATGCCTTGAGGAAGAGAGACCAAACT
TGCCGCCACCGACCGTCCTTTCGGATCAAATCGGTGACATGCGCCTCCCA
GACTACGGGCTCCGTGCTCACGGGTGCAGGGGGAGTGGTGGTGGGGTCAT
GGCTTCTTGGTGGTATTGA
back to top
Synonyms
Publications