jgi.p|Nanoce1779_2|633295, mRNA_9599 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633295
Unique NamemRNA_9599
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1025
Alignment locationscaffold_31:27880..29407 -

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Properties
Property NameValue
TranscriptId633381
TrackFilteredModels2
ProteinId633295
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:27880..29407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633295gene_9599Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633295mRNA_9599-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9599CDS_9599Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9599 ID=mRNA_9599|Name=jgi.p|Nanoce1779_2|633295|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
CAGACGTCGTGACAGCCTTGTACGTGACAATGGGTGGATGGTTTCTCATG
CCGCAAGAGCCGGTGACGCTGAACAAATATTGGGTTACATGCCAATGTTT
CGATGCTTTCGACCGGCTATATGGCCACAGATACTGATCCTCACGGGGCG
TATGACGTTGTGCAATACTTAGAAACCGATGAAGAGCTGCAAGGAGAGAC
CTTGTGGAAAAAAAAAGAAGAGTTGGCTGAAGAGGAAGGTGAACGAGAGG
GAATAGCGTCTAGACGTCGGACCTGTGGGCAACGACGACACAGAGGAGGT
CCAAAAGTAAGTCTTAACCATGTGTCTCATGTCATACCCTGTCGAACATT
TATTCCTGGTACCCCCGTTCATTTTTTCGGCTATCAAAAAAAGAATATTG
ATGCACAAATGGGAGATTCTACGCAATTGAGAGCACATCGATACTTCTCT
CATCCACACTCTATGCGATCGGCACCGCTTTCGGTAAATAACATGTTTAC
CAGTTTTGAATGTGGACATACGATTAAGTTTCATAAGTATAGTTGCATTA
GCTGCAACGCCAATTCACTTTTGGGAAATAGCTCCAGAGAAGACGCGCAC
GAAGAACACATCCTCATAATGCCGCGCCTAGATGCGCTGGGGGTCACACC
CCAGGTGCGCGCGGCATTAGGATCCGACGTCGAGACCGCCGAGGAGCTTT
TCATGATGGCGCCCGGCGGCAGGGGAGGAGGAGGAGGAATGCGAGGCACA
GGGCTTGGCAAGCAGGTACGTATGGAGAATGGAAGGGGACAGATGGGAAT
AAGGACGTGAGGAATGTTTCTAGGTGGATTGTGGTTGTGTTCAGTGGCCT
AGGAGGATGATGGACCAGCTCGCTTGATCGGCGGGAGGTAAGGAGGAGGC
GGCTGCTCAGCATACGTGGAGGAGGAGAAGGGAATGCCTGTATTCATATT
TCGACACACTACCTACTCTGTCATCATCCCTCCTTCTCCCGATCCCTCCC
TCCAACACCCACACCATTACCCTCC
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protein sequence of jgi.p|Nanoce1779_2|633295

>mRNA_9599-protein ID=mRNA_9599-protein|Name=jgi.p|Nanoce1779_2|633295|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MLSTGYMATDTDPHGAYDVVQYLETDEELQGETLWKKKEELAEEEGEREG
IASRRRTCGQRRHRGGPKVSLNHVSHVIPCRTFIPGTPVHFFGYQKKNID
AQMGDSTQLRAHRYFSHPHSMRSAPLSVNNMFTSFECGHTIKFHKYSCIS
CNANSLLGNSSREDAHEEHILIMPRLDALGVTPQVRAALGSDVETAEELF
MMAPGGRGGGGGMRGTGLGKQVRMENGRGQMGIRT*
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mRNA from alignment at scaffold_31:27880..29407-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9599 ID=mRNA_9599|Name=jgi.p|Nanoce1779_2|633295|organism=Nannochloropsis oceanica|type=mRNA|length=1528bp|location=Sequence derived from alignment at scaffold_31:27880..29407- (Nannochloropsis oceanica)
CAGACGTCGTGACAGCCTTGTACGTGACAATGGGTGGATGGTTTCTCATG
CCGCAAGAGCCGGTGACGCTGAACAAATATTGGGTTACATGCCAATGTTT
CGATGCTTTCGACCGGCTATATGGCCACAGATACTGATCCTCACGGGGCG
TATGACGTTGTGCAATACTTAGAAACCGATGAAGAGCTGCAAGGAGAGAC
CTTGTGGAAAAAAAAAGAAGAGTTGGCTGAAGAGGAAGGTGAACGAGAGG
GAATAGCGTCTAGACGTCGGACCTGTGGGCAACGACGACACAGAGGAGGT
CCAAAAGTAAGGTATGTCTCTCGTTTGCCTTCTACAGGGGTATCTTTGGT
AGAAGAGGAGGATCGCTCAGCAATTGAGCGGACTCTCGAACGTCTTCCAT
ATTACAGAGTGAAATGAAACGAAAACGATTTATGATCACCCCGATTATTG
TGTACTGTCATTTCCTCCTTCTGTATCTCTCTCTTTAGTCTTAACCATGT
GTCTCATGTCATACCCTGTCGAACATTTATTCCTGGTACCCCCGTTCATT
TTTTCGGCTATCAAAAAAAGAATATTGATGCACAAATGGGAGATTCTACG
CAATTGAGAGCACATCGATACTTCTCTCATCCACACTCTATGCGATCGGC
ACCGCTTTCGGTAAATAACATGTTTACCAGTTTTGAATGTGGACATACGA
TTAAGTTTCATAAGTATAGTTGCATTAGCTGCAACGCCAATTCACTTTTG
GGAAATAGCTCCAGAGAAGGTAATTGCAAGGGTATGCGAGCGAAGCTGTT
ATTTGAAAGAAAGAGTATGGATACGACTAATCAAGCCCGAGTACGCTCAA
ACACATAGTAAGGTACCTTTTGAAGGCCAAGCATCACAGATAGGTTACTG
CAATACCAGCTCTAAGTCAGACAAGCACATCGCGGAGCAGGTCCACGCTA
AGCGTTGGGGCGTGAGTGAGGATGCACGAAAGGATGAACGCGATTTACCC
CCCCCGCGAAAGACGTTGCTGAGCCGTATCGTCCATTTCTGCGCACGTCA
AGCAATTACTTCCCTCAATGTTTCTACTCCCATGCCTCCCTGCAGACGCG
CACGAAGAACACATCCTCATAATGCCGCGCCTAGATGCGCTGGGGGTCAC
ACCCCAGGTGCGCGCGGCATTAGGATCCGACGTCGAGACCGCCGAGGAGC
TTTTCATGATGGCGCCCGGCGGCAGGGGAGGAGGAGGAGGAATGCGAGGC
ACAGGGCTTGGCAAGCAGGTACGTATGGAGAATGGAAGGGGACAGATGGG
AATAAGGACGTGAGGAATGTTTCTAGGTGGATTGTGGTTGTGTTCAGTGG
CCTAGGAGGATGATGGACCAGCTCGCTTGATCGGCGGGAGGTAAGGAGGA
GGCGGCTGCTCAGCATACGTGGAGGAGGAGAAGGGAATGCCTGTATTCAT
ATTTCGACACACTACCTACTCTGTCATCATCCCTCCTTCTCCCGATCCCT
CCCTCCAACACCCACACCATTACCCTCC
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Coding sequence (CDS) from alignment at scaffold_31:27880..29407-

>mRNA_9599 ID=mRNA_9599|Name=jgi.p|Nanoce1779_2|633295|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_31:27880..29407- (Nannochloropsis oceanica)
ACGCGCACGAAGAACACATCCTCATAATGCCGCGCCTAGATGCGCTGGGG
GTCACACCCCAGGTGCGCGCGGCATTAGGATCCGACGTCGAGACCGCCGA
GGAGCTTTTCATGATGGCGCCCGGCGGCAGGGGAGGAGGAGGAGGAATGC
GAGGCACAGGGCTTGGCAAGCAGGTACGTATGGAGAATGGAAGGGGACAG
ATGGGAATAAGGACGTGATCTTAACCATGTGTCTCATGTCATACCCTGTC
GAACATTTATTCCTGGTACCCCCGTTCATTTTTTCGGCTATCAAAAAAAG
AATATTGATGCACAAATGGGAGATTCTACGCAATTGAGAGCACATCGATA
CTTCTCTCATCCACACTCTATGCGATCGGCACCGCTTTCGGTAAATAACA
TGTTTACCAGTTTTGAATGTGGACATACGATTAAGTTTCATAAGTATAGT
TGCATTAGCTGCAACGCCAATTCACTTTTGGGAAATAGCTCCAGAGAAGA
TGCTTTCGACCGGCTATATGGCCACAGATACTGATCCTCACGGGGCGTAT
GACGTTGTGCAATACTTAGAAACCGATGAAGAGCTGCAAGGAGAGACCTT
GTGGAAAAAAAAAGAAGAGTTGGCTGAAGAGGAAGGTGAACGAGAGGGAA
TAGCGTCTAGACGTCGGACCTGTGGGCAACGACGACACAGAGGAGGTCCA
AAAGTAAGACGCGCACGAAGAACACATCCTCATAATGCCGCGCCTAGATG
CGCTGGGGGTCACACCCCAGGTGCGCGCGGCATTAGGATCCGACGTCGAG
ACCGCCGAGGAGCTTTTCATGATGGCGCCCGGCGGCAGGGGAGGAGGAGG
AGGAATGCGAGGCACAGGGCTTGGCAAGCAGGTACGTATGGAGAATGGAA
GGGGACAGATGGGAATAAGGACGTGATCTTAACCATGTGTCTCATGTCAT
ACCCTGTCGAACATTTATTCCTGGTACCCCCGTTCATTTTTTCGGCTATC
AAAAAAAGAATATTGATGCACAAATGGGAGATTCTACGCAATTGAGAGCA
CATCGATACTTCTCTCATCCACACTCTATGCGATCGGCACCGCTTTCGGT
AAATAACATGTTTACCAGTTTTGAATGTGGACATACGATTAAGTTTCATA
AGTATAGTTGCATTAGCTGCAACGCCAATTCACTTTTGGGAAATAGCTCC
AGAGAAGATGCTTTCGACCGGCTATATGGCCACAGATACTGATCCTCACG
GGGCGTATGACGTTGTGCAATACTTAGAAACCGATGAAGAGCTGCAAGGA
GAGACCTTGTGGAAAAAAAAAGAAGAGTTGGCTGAAGAGGAAGGTGAACG
AGAGGGAATAGCGTCTAGACGTCGGACCTGTGGGCAACGACGACACAGAG
GAGGTCCAAAAGTAAGACGCGCACGAAGAACACATCCTCATAATGCCGCG
CCTAGATGCGCTGGGGGTCACACCCCAGGTGCGCGCGGCATTAGGATCCG
ACGTCGAGACCGCCGAGGAGCTTTTCATGATGGCGCCCGGCGGCAGGGGA
GGAGGAGGAGGAATGCGAGGCACAGGGCTTGGCAAGCAGGTACGTATGGA
GAATGGAAGGGGACAGATGGGAATAAGGACGTGATCTTAACCATGTGTCT
CATGTCATACCCTGTCGAACATTTATTCCTGGTACCCCCGTTCATTTTTT
CGGCTATCAAAAAAAGAATATTGATGCACAAATGGGAGATTCTACGCAAT
TGAGAGCACATCGATACTTCTCTCATCCACACTCTATGCGATCGGCACCG
CTTTCGGTAAATAACATGTTTACCAGTTTTGAATGTGGACATACGATTAA
GTTTCATAAGTATAGTTGCATTAGCTGCAACGCCAATTCACTTTTGGGAA
ATAGCTCCAGAGAAGATGCTTTCGACCGGCTATATGGCCACAGATACTGA
TCCTCACGGGGCGTATGACGTTGTGCAATACTTAGAAACCGATGAAGAGC
TGCAAGGAGAGACCTTGTGGAAAAAAAAAGAAGAGTTGGCTGAAGAGGAA
GGTGAACGAGAGGGAATAGCGTCTAGACGTCGGACCTGTGGGCAACGACG
ACACAGAGGAGGTCCAAAAGTAAG
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Synonyms
Publications