jgi.p|Nanoce1779_2|605084, mRNA_9598 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605084
Unique NamemRNA_9598
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length371
Alignment locationscaffold_31:25303..25856 -

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Properties
Property NameValue
TranscriptId605170
TrackFilteredModels2
ProteinId605084
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:25303..25856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605084gene_9598Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605084mRNA_9598-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9598CDS_9598Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9598 ID=mRNA_9598|Name=jgi.p|Nanoce1779_2|605084|organism=Nannochloropsis oceanica|type=mRNA|length=371bp
CGCCTATTGGTCCCTTTTCCCTTCCCTTCGTCTGATGCTTCGTTTGGGTG
GAGGGGGAGGAAGGGGGGGAAGGAGGGAGGGGGGAGGGGATGAAGCGGAG
GAGGACTTCGTGTTGGGGGAGGTGGCGGTGTATAGTGCCACGTCTCAGGA
CACTGCTCCTCCTCCCCCCTCTCCTCCCCTTCCTGGACAGTCCCACCAGG
CCCTCCGTCCGTCTCTTCCTCCCTCCCTCCCCCGCACCTTCTTCCGGATC
GACGCCAGCGGTGTGCGTGATGTCCTCTGAGACCGAGGGAGGGAGGGAGG
GAGGGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGGGAGGGGTGCATGTG
TAAATCATAGAGAGCTGCTGC
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protein sequence of jgi.p|Nanoce1779_2|605084

>mRNA_9598-protein ID=mRNA_9598-protein|Name=jgi.p|Nanoce1779_2|605084|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MKRRRTSCWGRWRCIVPRLRTLLLLPPLLPFLDSPTRPSVRLFLPPSPAP
SSGSTPAVCVMSSETEGGREGGREGERERGREGGVHV*
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mRNA from alignment at scaffold_31:25303..25856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9598 ID=mRNA_9598|Name=jgi.p|Nanoce1779_2|605084|organism=Nannochloropsis oceanica|type=mRNA|length=554bp|location=Sequence derived from alignment at scaffold_31:25303..25856- (Nannochloropsis oceanica)
CGCCTATTGGTCCCTTTTCCCTTCCCTTCGTCTGATGCTTCGTTTGGGTG
GAGGGGGAGGAAGGGGGGGAAGGAGGGAGGGGGGAGGGGATGAAGCGGAG
GAGGACTTCGTGTTGGGGGAGGTGGCGGTGTATAGTGCCACGTCTCAGGT
AGGAAGAGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGGAGACT
AGATAGACGAATCAAATGTATTGTTTGATCCGCTGAGGCCGACAACCCCC
CTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCTCCCTCCCAATCACTTGCAGGACACTGCTCCTCCTCCCC
CCTCTCCTCCCCTTCCTGGACAGTCCCACCAGGCCCTCCGTCCGTCTCTT
CCTCCCTCCCTCCCCCGCACCTTCTTCCGGATCGACGCCAGCGGTGTGCG
TGATGTCCTCTGAGACCGAGGGAGGGAGGGAGGGAGGGAGAGAAGGAGAG
AGGGAGAGAGGGAGAGAGGGAGGGGTGCATGTGTAAATCATAGAGAGCTG
CTGC
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Coding sequence (CDS) from alignment at scaffold_31:25303..25856-

>mRNA_9598 ID=mRNA_9598|Name=jgi.p|Nanoce1779_2|605084|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_31:25303..25856- (Nannochloropsis oceanica)
GACACTGCTCCTCCTCCCCCCTCTCCTCCCCTTCCTGGACAGTCCCACCA
GGCCCTCCGTCCGTCTCTTCCTCCCTCCCTCCCCCGCACCTTCTTCCGGA
TCGACGCCAGCGGTGTGCGTGATGTCCTCTGAGACCGAGGGAGGGAGGGA
GGGAGGGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGGGAGGGGTGCATG
TGTAAATGAAGCGGAGGAGGACTTCGTGTTGGGGGAGGTGGCGGTGTATA
GTGCCACGTCTCAGGACACTGCTCCTCCTCCCCCCTCTCCTCCCCTTCCT
GGACAGTCCCACCAGGCCCTCCGTCCGTCTCTTCCTCCCTCCCTCCCCCG
CACCTTCTTCCGGATCGACGCCAGCGGTGTGCGTGATGTCCTCTGAGACC
GAGGGAGGGAGGGAGGGAGGGAGAGAAGGAGAGAGGGAGAGAGGGAGAGA
GGGAGGGGTGCATGTGTAAATGAAGCGGAGGAGGACTTCGTGTTGGGGGA
GGTGGCGGTGTATAGTGCCACGTCTCAG
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Synonyms
Publications